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Gene: Hoxd4 (homeo box D4) Rattus norvegicus
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Symbol: Hoxd4
Name: homeo box D4
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II regulatory region sequence-specific DNA binding activity; and activating transcription factor binding activity. Predicted to be involved in several processes, including embryonic skeletal system morphogenesis; positive regulation of transcription by RNA polymerase II; and stem cell differentiation. Predicted to localize to the cell junction and nucleoplasm. Orthologous to human HOXD4 (homeobox D4); INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein Hox-D4; LOC288153
Orthologs:
Homo sapiens (human) : HOXD4 (homeobox D4)  HGNC  Alliance
Mus musculus (house mouse) : Hoxd4 (homeobox D4)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxd4 (homeobox D4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxd4 (homeobox D4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0361,634,005 - 61,653,581 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,634,005 - 61,651,056 (+)Ensembl
Rnor_5.0368,099,689 - 68,119,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,326,880 - 57,343,942 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1357,233,172 - 57,240,314 (+)NCBI
Celera359,135,961 - 59,152,998 (+)NCBICelera
Cytogenetic Map3q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxd4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309690
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.