Symbol:
Hoxd4
Name:
homeobox D4
RGD ID:
9011686
Description:
ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); embryonic organ development (ortholog); embryonic skeletal system morphogenesis (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN cell junction (ortholog); nucleoplasm (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
homeobox protein Hox-D4
RGD Orthologs
Alliance Orthologs
More Info
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More Info
Species
Gene symbol and name
Data Source
Assertion derived from
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Orthologs 1
Homo sapiens (human):
HOXD4 (homeobox D4)
NCBI
Ortholog
Mus musculus (house mouse):
Hoxd4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Hoxd4 (homeo box D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
HOXD4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
HOXD4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Hoxd4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
HOXD4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Hoxd4 (homeobox D4)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information:
Annotation category: partial on reference assembly
Position:
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955403 20,510,364 - 20,526,353 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955403 20,510,364 - 20,526,564 (-) NCBI ChiLan1.0 ChiLan1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Hoxd4 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955403 20,510,364 - 20,526,353 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955403 20,510,364 - 20,526,564 (-) NCBI ChiLan1.0 ChiLan1.0
HOXD4 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 2 176,151,550 - 176,153,226 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 2 176,151,550 - 176,153,226 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 2 177,016,278 - 177,017,954 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 2 176,724,359 - 176,726,197 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 2 176,841,619 - 176,843,454 NCBI Celera 2 170,625,292 - 170,627,130 (+) NCBI Celera Cytogenetic Map 2 q31.1 NCBI HuRef 2 168,892,961 - 168,894,799 (+) NCBI HuRef CHM1_1 2 177,021,982 - 177,023,820 (+) NCBI CHM1_1 T2T-CHM13v2.0 2 176,637,994 - 176,641,368 (+) NCBI T2T-CHM13v2.0
Hoxd4 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 74,552,322 - 74,559,504 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 74,542,273 - 74,559,504 (+) Ensembl GRCm39 Ensembl GRCm38 2 74,721,978 - 74,729,160 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 74,711,929 - 74,729,160 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 74,560,035 - 74,567,217 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 74,522,817 - 74,529,999 (+) NCBI MGSCv36 mm8 Celera 2 76,392,107 - 76,399,289 (+) NCBI Celera Cytogenetic Map 2 C3 NCBI cM Map 2 44.13 NCBI
Hoxd4 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 80,021,886 - 80,041,462 (+) NCBI GRCr8 mRatBN7.2 3 59,614,464 - 59,634,042 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 59,614,464 - 59,631,528 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 63,001,717 - 63,018,774 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 71,585,362 - 71,602,413 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 69,350,424 - 69,367,480 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 61,634,005 - 61,653,581 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 61,634,005 - 61,651,056 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 68,099,689 - 68,119,265 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 57,326,880 - 57,343,942 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 3 57,233,172 - 57,240,314 (+) NCBI Celera 3 59,135,961 - 59,152,998 (+) NCBI Celera Cytogenetic Map 3 q23 NCBI
HOXD4 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 13 78,803,640 - 78,820,715 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 2B 78,834,014 - 78,838,533 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 2B 63,429,084 - 63,432,972 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 Ensembl 2B 181,140,175 - 181,141,484 (+) Ensembl panpan1.1 panPan2
HOXD4 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ROS_Cfam_1.0 36 20,098,858 - 20,105,489 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 36 20,101,074 - 20,102,318 (+) Ensembl ROS_Cfam_1.0 Ensembl
Hoxd4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405303 137,083,433 - 137,089,299 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936509 5,637,600 - 5,640,917 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936509 5,637,600 - 5,640,335 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
HOXD4 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 10 61,719,985 - 61,731,371 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 10 61,727,026 - 61,728,332 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 137,878,916 - 137,898,282 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Hoxd4 (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCLAT00000021306 ⟹ ENSCLAP00000021105
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 Ensembl NW_004955403 20,510,364 - 20,526,353 (-) Ensembl
RefSeq Acc Id:
XM_005373411 ⟹ XP_005373468
Type:
CODING
Position:
Chinchilla Assembly Chr Position (strand) Source ChiLan1.0 NW_004955403 20,510,364 - 20,526,564 (-) NCBI
Sequence:
TTTCCCAGAGCCTCACCCCCTCTTTTTCTAACCTTTGTCTCTGCAGAGGTGGGCTCCGGCAGCCGGCTGCGGGCTTGCGGGGGCGCCGGCCTCGGCTCCCGCCCGCCGCCCGCCCGGGCAGCCGCCTC CGGGCCGGTGGGGAGCCCGGCGGGGGAGCCGGAGAAGCCGGGGGTGCCGAGCCCCCCGCCGGGCTAACACCGCCCGCGGACAGGCTCGGTGCGGGCAGCCGCGGTCCGGCGCGGCTCCTTCTGCACCA TGAGCGGGTGCCCGCCGCCGGGAGGGCGCGCAGCCCGGCAGCGCCTAGTGGATTACAGCAGCCGCCCGGGCCGACCGCCGCCTCCAGCTCGGCAGCCTCCGGTTAAGAGCATACAAGTGCAGATGCTT GGATCCTGGAGCAGCGATAGGAAAGTGAGAGGCTCCAGCCAGCACCCGGCTCAGAAGGAGACAGTTCTACTCCCAGCTCCCCTGCCCACTAGGAAAGCAAACCAGTTCGGACGGAGACAGAGCGCCGC TCGTGCCGGCCTCAGACCAGGGCGGCTTGGTGCCTGGGAGCAGCGCCTGCCTCAGGGTCTGCAGTAGAAGCTGCGGGGACACGGAGAGGCCAGCCGGGCTGAGGGCCCAGGAAGGAAGATCGACTGTC CCTGGTGACATCCCGCAGCTTTTTCCTTCAGAAGCTCCTCACCTTTAAATAGAGGCTTCAGTGGGTGCTGCTCCTGCAAAAAGAAACCCTAACTGGTTGCGTGAATTCTGGGCCAAAAGGGTTAGGTT TGGGGGTGCTGGGGAGTGAAGCAAATGACCCCTCAGTTCCAGCTACAGCTCTGCCCTCCCCAGGGTATGAGATATAAATATACCCAAATGGGGACTAACTGGGTTTTGGGAACCTTGTGGGAGGGCAA AAGCAAGTTGAAAAAAAGGGCCAGTAGGTACCTTTGGAGGACATTTAGGTAAGATGAGGGTCCCCTCACCACCTTCTGGGCCTAACCCTCAGCTGCAAGAACTTGGGCATCTGTGGTTGCTGCCACAT CAGCAAGGCCCAGCTTTGGCTAGCAACCCCCTGACCTGGGTACCTGGAGAAAAGCCTGGTGGTTACTCATTGCCTAACTTAATTCAGGCCGGCCAGATTCTGGTAACTTTCGGGTGACCCTGATGAGG ACAAAGCCGGACTCAGTCTTTGTATGGCAGAGTCCCCGCTCCGTCGCTGGGCAGACAAAGTGCCCAACTCAGAGGCCACCTCATCTACCCACCTTTTGTGGCCTTGTACCCAATAAAAGAATTCATTC TCCCTTGCACCGTGCCCACCTTGAAGGGGTGCTTTCATCGAGGTGAGTGGAGAGGGCAGGAGAGGTTAACAAAAGTCAGAGGAGACAAAAGCTGAGACTACCTGCTGAAAATAGGGGTGACGGAGATT GGAACTACATTAACACCTGGCAGGGGCCCGCAAATGTGGTATGGCAAGTCATTTGATTACACGTACGTTATTTAGTTAAATTTGTGAAAATTATGAGATGCTCACCAAACCGGTGATAAACTCGCTCC CTCCCCATTGGCTGGCCTGGTCACATGGCCGCCCAACTTTATTCAGTTGACAGCAAGTAGGAGGGCCCTATGGAAGGAGAAAAAAAGACAACACGAGAAAAATTAGTATTTTCTACCTTCTGAAATTA ATGGCCATGAGTTCGTATATGGTGAACTCTAAGTATGTGGACCCCAAGTTTCCTCCGTGCGAGGAATATTTGCAGGGCGGCTACCTAGGCGAGCAGGGCGCCGACTACTACGGCGGCGGCGCACAGGG CGCCGACTTCCAGCCCCCGGGGCTCTACCCGCGGCCCGACTTCGGGGAGCAGCCTTTCGGAGGCGGCGGGCCCGGGCCCGGCGCAGCACTGCCCGCACGGGGCCCCGGACAGGAGGCGAGCGGCCCCG GCGGGCACTACGGCACCCCGGGAGAGCCGTGTCCGGCGCCCCCGCCTGCGCCCCTGCCAGGCGCCCGGGCCTGCAGCCAGCCTGGCGGCCCCAAGCAGCCGCCCCCCGGAACAGCGCTCAAACAGCCG GCCGTGGTCTACCCCTGGATGAAGAAGGTGCACGTGAACTCGGTGAACCCCAACTACACCGGCGGGGAGCCCAAGCGTTCCCGGACAGCCTACACTCGGCAGCAAGTCCTAGAACTGGAAAAGGAATT TCATTTTAACAGGTATCTGACGCGGCGCCGTCGGATAGAAATCGCTCACACTCTATGTCTGTCTGAGCGCCAGATCAAGATCTGGTTCCAGAACCGGAGGATGAAGTGGAAAAAAGACCACAAGCTGC CCAATACTAAAGGCAGGTCATCATCGTCATCTTCCTCCTCCTCCTGCTCCTCTTCAGCCGCCCCTGGCCAGCATTTGCAGCCGATGACCAAGGACCACCACATGGACCTGACGACCTTATAGAAGTGG GGACCCTGGGCCCATCCCTCCCTGCGCTCCAGGCTGAGCCGAAGCTGCGGGGGCAGGCCGGGCCTGCTGTGACCTCGCTGGGC
hide sequence
RefSeq Acc Id:
XP_005373468 ⟸ XM_005373411
- UniProtKB:
A0A8C2VXC6 (UniProtKB/TrEMBL)
- Sequence:
MAMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPFGGGGPGPGAALPARGPGQEASGPGGHYGTPGEPCPAPPPAPLPGARACSQPGGPKQPPPGTALKQP AVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSAAPGQHLQPMTKDHHMDLTTL
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Ensembl Acc Id:
ENSCLAP00000021105 ⟸ ENSCLAT00000021306