Zc3h15 (zinc finger CCCH-type containing 15) - Rat Genome Database

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Gene: Zc3h15 (zinc finger CCCH-type containing 15) Rattus norvegicus
Analyze
Symbol: Zc3h15
Name: zinc finger CCCH-type containing 15
RGD ID: 1359234
Description: Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation and positive regulation of GTPase activity. Predicted to act upstream of or within cytokine-mediated signaling pathway. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brain zinc finger protein; LOC362154; MGC95079; p48ZnF; zinc finger CCCH domain-containing protein 15
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Zc3h15-ps3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,151,432 - 89,171,203 (+)NCBIGRCr8
mRatBN7.2368,744,591 - 68,764,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,744,604 - 68,764,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx372,147,117 - 72,166,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0380,745,773 - 80,765,378 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0378,480,214 - 78,499,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0371,020,420 - 71,040,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0377,550,822 - 77,570,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4366,821,085 - 66,840,710 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1366,717,456 - 66,737,080 (+)NCBI
Celera368,123,487 - 68,143,111 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Nerve growth factor (NGF) induces mRNA expression of the new transcription factor protein p48ZnF. Heese K, etal., Exp Mol Med 2004 Apr 30;36(2):130-4.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10880228   PMID:22658674   PMID:22681889   PMID:23470633   PMID:23711155   PMID:25468996  


Genomics

Comparative Map Data
Zc3h15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8389,151,432 - 89,171,203 (+)NCBIGRCr8
mRatBN7.2368,744,591 - 68,764,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl368,744,604 - 68,764,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx372,147,117 - 72,166,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0380,745,773 - 80,765,378 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0378,480,214 - 78,499,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0371,020,420 - 71,040,159 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0377,550,822 - 77,570,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4366,821,085 - 66,840,710 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1366,717,456 - 66,737,080 (+)NCBI
Celera368,123,487 - 68,143,111 (+)NCBICelera
Cytogenetic Map3q24NCBI
ZC3H15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382186,486,260 - 186,509,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2186,486,253 - 186,511,929 (+)EnsemblGRCh38hg38GRCh38
GRCh372187,350,987 - 187,374,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362187,059,130 - 187,082,333 (+)NCBINCBI36Build 36hg18NCBI36
Celera2180,946,684 - 180,969,891 (+)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2179,210,476 - 179,234,063 (+)NCBIHuRef
CHM1_12187,357,183 - 187,380,391 (+)NCBICHM1_1
T2T-CHM13v2.02186,975,546 - 186,998,651 (+)NCBIT2T-CHM13v2.0
Zc3h15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39283,474,922 - 83,494,961 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl283,474,779 - 83,494,966 (+)EnsemblGRCm39 Ensembl
GRCm38283,644,578 - 83,664,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl283,644,435 - 83,664,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37283,484,735 - 83,504,774 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36283,445,417 - 83,465,456 (+)NCBIMGSCv36mm8
Celera285,284,428 - 85,304,248 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.33NCBI
Zc3h15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540311,740,107 - 11,761,005 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540311,740,107 - 11,761,005 (-)NCBIChiLan1.0ChiLan1.0
ZC3H15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21389,161,727 - 89,185,225 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B89,176,974 - 89,200,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B73,774,955 - 73,798,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B191,576,403 - 191,599,609 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B191,576,403 - 191,599,609 (+)Ensemblpanpan1.1panPan2
ZC3H15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13628,730,213 - 28,743,884 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3628,725,079 - 28,743,884 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3628,627,635 - 28,641,296 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03628,950,239 - 29,009,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3628,949,771 - 28,969,725 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13629,014,656 - 29,028,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03628,946,032 - 28,959,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03629,116,356 - 29,130,029 (+)NCBIUU_Cfam_GSD_1.0
Zc3h15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303145,903,340 - 145,929,725 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650610,907,697 - 10,934,785 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650610,908,347 - 10,934,785 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1591,493,713 - 91,518,760 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11591,493,591 - 91,517,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215101,503,541 - 101,527,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11072,020,594 - 72,044,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1072,020,808 - 72,043,420 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040127,461,984 - 127,485,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248993,394,009 - 3,415,446 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zc3h15
97 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:459
Count of miRNA genes:231
Interacting mature miRNAs:279
Transcripts:ENSRNOT00000007276
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat

Markers in Region
RH140856  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3q24UniSTS
DXS9848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2368,753,435 - 68,754,836 (+)MAPPERmRatBN7.2
Rnor_6.0371,029,262 - 71,030,662NCBIRnor6.0
Rnor_5.0377,559,647 - 77,561,047UniSTSRnor5.0
RGSC_v3.4366,829,813 - 66,831,213UniSTSRGSC3.4
Celera368,132,215 - 68,133,615UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007276   ⟹   ENSRNOP00000007276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl368,744,604 - 68,764,330 (+)Ensembl
Rnor_6.0 Ensembl371,020,534 - 71,040,157 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094114   ⟹   ENSRNOP00000090988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl368,752,033 - 68,764,333 (+)Ensembl
RefSeq Acc Id: NM_001010963   ⟹   NP_001010963
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8389,151,578 - 89,171,203 (+)NCBI
mRatBN7.2368,744,708 - 68,764,335 (+)NCBI
Rnor_6.0371,020,534 - 71,040,159 (+)NCBI
Rnor_5.0377,550,822 - 77,570,544 (+)NCBI
RGSC_v3.4366,821,085 - 66,840,710 (+)RGD
Celera368,123,487 - 68,143,111 (+)RGD
Sequence:
RefSeq Acc Id: XR_352425
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8389,151,432 - 89,171,203 (+)NCBI
mRatBN7.2368,744,591 - 68,764,335 (+)NCBI
Rnor_6.0371,020,420 - 71,040,159 (+)NCBI
Rnor_5.0377,550,822 - 77,570,544 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001010963 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88438 (Get FASTA)   NCBI Sequence Viewer  
  AAR24540 (Get FASTA)   NCBI Sequence Viewer  
  EDL79292 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007276.4
  ENSRNOP00000090988.1
  ENSRNOP00055030362
  ENSRNOP00060014764
  ENSRNOP00065029312
GenBank Protein Q6U6G5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001010963   ⟸   NM_001010963
- UniProtKB: Q6U6G5 (UniProtKB/Swiss-Prot),   A6HMP1 (UniProtKB/TrEMBL),   A0A8I6GIP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007276   ⟸   ENSRNOT00000007276
Ensembl Acc Id: ENSRNOP00000090988   ⟸   ENSRNOT00000094114
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6U6G5-F1-model_v2 AlphaFold Q6U6G5 1-426 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692175
Promoter ID:EPDNEW_R2700
Type:initiation region
Name:Zc3h15_1
Description:zinc finger CCCH-type containing 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0371,020,460 - 71,020,520EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359234 AgrOrtholog
BioCyc Gene G2FUF-49199 BioCyc
Ensembl Genes ENSRNOG00000005256 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021755 UniProtKB/Swiss-Prot
  ENSRNOG00060011198 UniProtKB/Swiss-Prot
  ENSRNOG00065021385 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007276.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094114.1 UniProtKB/TrEMBL
  ENSRNOT00055037277 UniProtKB/Swiss-Prot
  ENSRNOT00060018930 UniProtKB/Swiss-Prot
  ENSRNOT00065036375 UniProtKB/Swiss-Prot
Gene3D-CATH 6.20.400.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7126102 IMAGE-MGC_LOAD
InterPro ZC3H15/TMA46_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362154 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95079 IMAGE-MGC_LOAD
NCBI Gene 362154 ENTREZGENE
PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER-CONTAINING PROTEIN P48ZNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DFRP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zc3h15 PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005256 RatGTEx
  ENSRNOG00055021755 RatGTEx
  ENSRNOG00060011198 RatGTEx
  ENSRNOG00065021385 RatGTEx
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GIP0 ENTREZGENE, UniProtKB/TrEMBL
  A6HMP1 ENTREZGENE, UniProtKB/TrEMBL
  Q6U6G5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Zc3h15  zinc finger CCCH-type containing 15  LOC362154  brain zinc finger protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC362154  brain zinc finger protein      Symbol and Name status set to provisional 70820 PROVISIONAL