Rbms1 (RNA binding motif, single stranded interacting protein 1) - Rat Genome Database

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Gene: Rbms1 (RNA binding motif, single stranded interacting protein 1) Rattus norvegicus
Analyze
Symbol: Rbms1
Name: RNA binding motif, single stranded interacting protein 1
RGD ID: 1307777
Description: Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be involved in DNA replication. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Orthologous to human RBMS1 (RNA binding motif single stranded interacting protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362138; RNA-binding motif, single-stranded-interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,604,475 - 65,829,072 (-)NCBIGRCr8
mRatBN7.2345,195,828 - 45,420,406 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl345,197,972 - 45,420,376 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,554,606 - 48,776,212 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0357,138,175 - 57,359,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,908,213 - 55,130,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,802,870 - 47,025,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,803,355 - 47,025,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,910,791 - 52,132,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4342,438,537 - 42,663,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1342,334,916 - 42,560,101 (-)NCBI
Celera344,893,977 - 45,114,533 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
ciglitazone  (ISO)
ciguatoxin CTX1B  (ISO)
clothianidin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
genistein  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
isobutanol  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
rimonabant  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tetrachloromethane  (EXP,ISO)
topotecan  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,IEA,ISO)
nucleus  (IBA,IEA)
ribonucleoprotein complex  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rbms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8365,604,475 - 65,829,072 (-)NCBIGRCr8
mRatBN7.2345,195,828 - 45,420,406 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl345,197,972 - 45,420,376 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx348,554,606 - 48,776,212 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0357,138,175 - 57,359,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0354,908,213 - 55,130,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0346,802,870 - 47,025,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl346,803,355 - 47,025,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0351,910,791 - 52,132,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4342,438,537 - 42,663,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1342,334,916 - 42,560,101 (-)NCBI
Celera344,893,977 - 45,114,533 (-)NCBICelera
Cytogenetic Map3q21NCBI
RBMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382160,272,151 - 160,493,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2160,272,151 - 160,493,807 (-)EnsemblGRCh38hg38GRCh38
GRCh372161,128,662 - 161,350,318 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362160,838,758 - 161,058,551 (-)NCBINCBI36Build 36hg18NCBI36
Build 342160,956,021 - 161,175,812NCBI
Celera2154,740,148 - 154,834,898 (-)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2153,011,878 - 153,233,434 (-)NCBIHuRef
CHM1_12161,134,996 - 161,230,229 (-)NCBICHM1_1
T2T-CHM13v2.02160,729,618 - 160,951,341 (-)NCBIT2T-CHM13v2.0
Rbms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39260,580,537 - 60,794,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl260,580,537 - 60,793,536 (-)EnsemblGRCm39 Ensembl
GRCm38260,750,193 - 60,963,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl260,750,193 - 60,963,192 (-)EnsemblGRCm38mm10GRCm38
MGSCv37260,590,010 - 60,801,261 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36260,553,561 - 60,763,759 (-)NCBIMGSCv36mm8
Celera262,449,205 - 62,660,675 (-)NCBICelera
Cytogenetic Map2C1.2NCBI
cM Map234.95NCBI
Rbms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544913,164,401 - 13,370,494 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544913,164,306 - 13,368,011 (+)NCBIChiLan1.0ChiLan1.0
RBMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21362,966,726 - 63,186,931 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B62,981,697 - 63,200,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B47,568,438 - 47,787,601 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B164,939,363 - 165,158,106 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B164,939,363 - 165,038,851 (-)Ensemblpanpan1.1panPan2
RBMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1365,978,146 - 6,118,409 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl365,980,665 - 6,192,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,116,486 - 6,330,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0366,102,152 - 6,316,323 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl366,104,490 - 6,316,744 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1366,119,175 - 6,333,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0366,162,584 - 6,376,460 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0366,271,685 - 6,485,660 (-)NCBIUU_Cfam_GSD_1.0
Rbms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303123,112,008 - 123,316,749 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646918,300,760 - 18,505,729 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646918,300,984 - 18,505,712 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1567,194,072 - 67,409,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11567,192,880 - 67,409,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21574,418,814 - 74,617,798 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11045,668,578 - 45,887,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1045,672,007 - 45,887,163 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040153,687,022 - 153,904,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247325,104,081 - 5,319,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247325,104,411 - 5,319,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbms1
881 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:246
Count of miRNA genes:170
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000011682
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)33871036550302886Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat

Markers in Region
D3Rat103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,390,714 - 45,390,886 (+)MAPPERmRatBN7.2
mRatBN7.2345,390,714 - 45,390,751 (+)MAPPERmRatBN7.2
Rnor_6.0346,995,471 - 46,995,642NCBIRnor6.0
Rnor_6.0346,995,471 - 46,995,507NCBIRnor6.0
Rnor_5.0352,103,176 - 52,103,212UniSTSRnor5.0
Rnor_5.0352,103,176 - 52,103,347UniSTSRnor5.0
RGSC_v3.4342,634,072 - 42,634,108UniSTSRGSC3.4
RGSC_v3.4342,634,071 - 42,634,243RGDRGSC3.4
RGSC_v3.4342,634,072 - 42,634,243UniSTSRGSC3.4
RGSC_v3.1342,530,430 - 42,530,820RGD
Celera345,084,876 - 45,085,045UniSTS
Celera345,084,876 - 45,084,912UniSTS
RH 2.0 Map3364.0RGD
SHRSP x BN Map332.8199RGD
FHH x ACI Map331.65RGD
Cytogenetic Map3q21UniSTS
D3Rat83  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,391,621 - 45,391,731 (+)MAPPERmRatBN7.2
Rnor_6.0346,996,378 - 46,996,487NCBIRnor6.0
Rnor_5.0352,104,083 - 52,104,192UniSTSRnor5.0
RGSC_v3.4342,634,979 - 42,635,088UniSTSRGSC3.4
RGSC_v3.4342,634,978 - 42,635,088RGDRGSC3.4
RGSC_v3.1342,531,351 - 42,531,460RGD
Celera345,085,785 - 45,085,894UniSTS
RH 3.4 Map3600.83RGD
RH 3.4 Map3600.83UniSTS
RH 2.0 Map3360.8RGD
SHRSP x BN Map332.8199RGD
Cytogenetic Map3q21UniSTS
D3Got309  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,255,252 - 45,255,402 (+)MAPPERmRatBN7.2
Rnor_6.0346,860,146 - 46,860,295NCBIRnor6.0
Rnor_5.0351,968,067 - 51,968,216UniSTSRnor5.0
RGSC_v3.4342,495,342 - 42,495,491UniSTSRGSC3.4
Celera344,950,798 - 44,950,947UniSTS
Cytogenetic Map3q21UniSTS
RH80872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,198,563 - 45,198,720 (+)MAPPERmRatBN7.2
Rnor_6.0346,803,461 - 46,803,617NCBIRnor6.0
Rnor_5.0351,911,382 - 51,911,538UniSTSRnor5.0
RGSC_v3.4342,438,657 - 42,438,813UniSTSRGSC3.4
Celera344,894,097 - 44,894,253UniSTS
Cytogenetic Map3q21UniSTS
RH80864  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,198,563 - 45,198,733 (+)MAPPERmRatBN7.2
Rnor_6.0346,803,461 - 46,803,630NCBIRnor6.0
Rnor_5.0351,911,382 - 51,911,551UniSTSRnor5.0
RGSC_v3.4342,438,657 - 42,438,826UniSTSRGSC3.4
Celera344,894,097 - 44,894,266UniSTS
Cytogenetic Map3q21UniSTS
RH136033  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2345,198,205 - 45,198,407 (+)MAPPERmRatBN7.2
Rnor_6.0346,803,103 - 46,803,304NCBIRnor6.0
Rnor_5.0351,911,024 - 51,911,225UniSTSRnor5.0
RGSC_v3.4342,438,299 - 42,438,500UniSTSRGSC3.4
Celera344,893,739 - 44,893,940UniSTS
Cytogenetic Map3q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 45 29 19 29 5 6 67 35 41 11 5
Low 12 12 12 3 5 7 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000011682   ⟹   ENSRNOP00000011682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,197,981 - 45,338,927 (-)Ensembl
Rnor_6.0 Ensembl346,803,355 - 47,025,128 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087439   ⟹   ENSRNOP00000073145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,198,449 - 45,330,465 (-)Ensembl
Rnor_6.0 Ensembl346,803,356 - 46,942,966 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099437   ⟹   ENSRNOP00000095266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,197,981 - 45,420,074 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101661   ⟹   ENSRNOP00000094484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,197,981 - 45,338,927 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112740   ⟹   ENSRNOP00000077414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,200,636 - 45,420,376 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114670   ⟹   ENSRNOP00000078893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,197,972 - 45,420,071 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115982   ⟹   ENSRNOP00000082356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl345,197,979 - 45,291,119 (-)Ensembl
RefSeq Acc Id: NM_001012184   ⟹   NP_001012184
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,093 - 65,829,013 (-)NCBI
mRatBN7.2345,198,444 - 45,420,376 (-)NCBI
Rnor_6.0346,803,341 - 47,025,128 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
RGSC_v3.4342,438,537 - 42,663,729 (-)RGD
Celera344,893,977 - 45,114,533 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234234   ⟹   XP_006234296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,747,502 (-)NCBI
mRatBN7.2345,195,828 - 45,338,856 (-)NCBI
Rnor_6.0346,802,870 - 46,944,581 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234235   ⟹   XP_006234297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,829,036 (-)NCBI
mRatBN7.2345,195,828 - 45,420,405 (-)NCBI
Rnor_6.0346,802,870 - 47,025,178 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234236   ⟹   XP_006234298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,739,306 (-)NCBI
mRatBN7.2345,195,828 - 45,330,639 (-)NCBI
Rnor_6.0346,802,870 - 46,935,368 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234237   ⟹   XP_006234299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,604,475 - 65,747,502 (-)NCBI
mRatBN7.2345,195,828 - 45,338,856 (-)NCBI
Rnor_6.0346,802,870 - 46,944,582 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234238   ⟹   XP_006234300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,747,502 (-)NCBI
mRatBN7.2345,195,828 - 45,338,856 (-)NCBI
Rnor_6.0346,802,870 - 46,944,581 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234239   ⟹   XP_006234301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,746,917 (-)NCBI
mRatBN7.2345,195,828 - 45,338,271 (-)NCBI
Rnor_6.0346,802,870 - 46,943,553 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234241   ⟹   XP_006234303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,739,306 (-)NCBI
mRatBN7.2345,195,828 - 45,330,637 (-)NCBI
Rnor_6.0346,802,870 - 46,935,366 (-)NCBI
Rnor_5.0351,910,791 - 52,132,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591893   ⟹   XP_017447382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,746,920 (-)NCBI
mRatBN7.2345,195,828 - 45,338,252 (-)NCBI
Rnor_6.0346,802,870 - 46,943,553 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105393   ⟹   XP_038961321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,829,038 (-)NCBI
mRatBN7.2345,195,828 - 45,420,406 (-)NCBI
RefSeq Acc Id: XM_039105394   ⟹   XP_038961322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,739,284 (-)NCBI
mRatBN7.2345,195,828 - 45,330,640 (-)NCBI
RefSeq Acc Id: XM_039105397   ⟹   XP_038961325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,747,436 (-)NCBI
mRatBN7.2345,195,828 - 45,338,784 (-)NCBI
RefSeq Acc Id: XM_039105398   ⟹   XP_038961326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,635,535 (-)NCBI
mRatBN7.2345,195,828 - 45,226,890 (-)NCBI
RefSeq Acc Id: XM_063284113   ⟹   XP_063140183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,604,475 - 65,829,038 (-)NCBI
RefSeq Acc Id: XM_063284114   ⟹   XP_063140184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,604,475 - 65,747,502 (-)NCBI
RefSeq Acc Id: XM_063284115   ⟹   XP_063140185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,604,475 - 65,829,072 (-)NCBI
RefSeq Acc Id: XM_063284116   ⟹   XP_063140186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,604,475 - 65,739,311 (-)NCBI
RefSeq Acc Id: XM_063284117   ⟹   XP_063140187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8365,607,259 - 65,747,442 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001012184 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234296 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234297 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234298 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234299 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234300 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234301 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234303 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447382 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961322 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961325 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961326 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140184 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140185 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140186 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140187 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87094 (Get FASTA)   NCBI Sequence Viewer  
  EDL78986 (Get FASTA)   NCBI Sequence Viewer  
  EDL78989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011682
  ENSRNOP00000011682.4
  ENSRNOP00000073145
  ENSRNOP00000073145.2
  ENSRNOP00000077414
  ENSRNOP00000077414.1
  ENSRNOP00000078893
  ENSRNOP00000078893.1
  ENSRNOP00000082356.1
  ENSRNOP00000094484
  ENSRNOP00000094484.1
  ENSRNOP00000095266.1
GenBank Protein Q5PQP1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001012184   ⟸   NM_001012184
- UniProtKB: Q5PQP1 (UniProtKB/Swiss-Prot),   A6HLT5 (UniProtKB/TrEMBL),   A0A8I6AJP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234297   ⟸   XM_006234235
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234300   ⟸   XM_006234238
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AJP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234299   ⟸   XM_006234237
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZLN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234296   ⟸   XM_006234234
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AJP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234301   ⟸   XM_006234239
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AJP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234298   ⟸   XM_006234236
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K4R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234303   ⟸   XM_006234241
- Peptide Label: isoform X11
- UniProtKB: A6HLT7 (UniProtKB/TrEMBL),   A0A0G2K4R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447382   ⟸   XM_017591893
- Peptide Label: isoform X10
- UniProtKB: A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011682   ⟸   ENSRNOT00000011682
RefSeq Acc Id: ENSRNOP00000073145   ⟸   ENSRNOT00000087439
RefSeq Acc Id: XP_038961321   ⟸   XM_039105393
- Peptide Label: isoform X3
- UniProtKB: A6HLT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961325   ⟸   XM_039105397
- Peptide Label: isoform X16
- UniProtKB: A6HLT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961322   ⟸   XM_039105394
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K4R7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961326   ⟸   XM_039105398
- Peptide Label: isoform X17
RefSeq Acc Id: ENSRNOP00000094484   ⟸   ENSRNOT00000101661
RefSeq Acc Id: ENSRNOP00000078893   ⟸   ENSRNOT00000114670
RefSeq Acc Id: ENSRNOP00000077414   ⟸   ENSRNOT00000112740
RefSeq Acc Id: ENSRNOP00000082356   ⟸   ENSRNOT00000115982
RefSeq Acc Id: ENSRNOP00000095266   ⟸   ENSRNOT00000099437
RefSeq Acc Id: XP_063140185   ⟸   XM_063284115
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063140183   ⟸   XM_063284113
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140184   ⟸   XM_063284114
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063140186   ⟸   XM_063284116
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063140187   ⟸   XM_063284117
- Peptide Label: isoform X15
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQP1-F1-model_v2 AlphaFold Q5PQP1 1-403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692093
Promoter ID:EPDNEW_R2618
Type:multiple initiation site
Name:Rbms1_2
Description:RNA binding motif, single stranded interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2619  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0347,024,818 - 47,024,878EPDNEW
RGD ID:13692094
Promoter ID:EPDNEW_R2619
Type:initiation region
Name:Rbms1_1
Description:RNA binding motif, single stranded interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2618  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0347,025,129 - 47,025,189EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307777 AgrOrtholog
BioCyc Gene G2FUF-49613 BioCyc
Ensembl Genes ENSRNOG00000008482 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011682.7 UniProtKB/TrEMBL
  ENSRNOT00000087439.2 UniProtKB/TrEMBL
  ENSRNOT00000099437.1 UniProtKB/TrEMBL
  ENSRNOT00000101661.1 UniProtKB/TrEMBL
  ENSRNOT00000112740.1 UniProtKB/TrEMBL
  ENSRNOT00000114670 ENTREZGENE
  ENSRNOT00000114670.1 UniProtKB/TrEMBL
  ENSRNOT00000115982.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191334 IMAGE-MGC_LOAD
InterPro Hud_Sxl_RNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MSSP1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362138 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94632 IMAGE-MGC_LOAD
NCBI Gene 362138 ENTREZGENE
PANTHER RNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING MOTIF, SINGLE-STRANDED-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbms1 PhenoGen
PRINTS HUDSXLRNA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008482 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K4R7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y9I4_RAT UniProtKB/TrEMBL
  A0A8I5ZLN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B2A8_RAT UniProtKB/TrEMBL
  A0A8I6G7B3_RAT UniProtKB/TrEMBL
  A0A8L2Q545 ENTREZGENE, UniProtKB/TrEMBL
  A6HLT5 ENTREZGENE, UniProtKB/TrEMBL
  A6HLT6 ENTREZGENE, UniProtKB/TrEMBL
  A6HLT7 ENTREZGENE, UniProtKB/TrEMBL
  A6HLT8 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQP1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rbms1  RNA binding motif, single stranded interacting protein 1  Rbms1_predicted  RNA binding motif, single stranded interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rbms1_predicted  RNA binding motif, single stranded interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED