Or5d3 (olfactory receptor family 5 subfamily D member 3) - Rat Genome Database

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Gene: Or5d3 (olfactory receptor family 5 subfamily D member 3) Rattus norvegicus
Analyze
Symbol: Or5d3
Name: olfactory receptor family 5 subfamily D member 3
RGD ID: 1586409
Description: INTERACTS WITH bisphenol A; ivermectin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC688691; olfactory receptor 5D13-like; similar to Olfactory receptor 5D13
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8394,190,302 - 94,215,417 (-)NCBIGRCr8
mRatBN7.2373,734,091 - 73,759,208 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0376,422,727 - 76,447,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0383,130,712 - 83,155,400 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4372,042,873 - 72,044,802 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera373,018,806 - 73,043,742 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
ivermectin  (ISO)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Comparative Map Data
Or5d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8394,190,302 - 94,215,417 (-)NCBIGRCr8
mRatBN7.2373,734,091 - 73,759,208 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0376,422,727 - 76,447,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0383,130,712 - 83,155,400 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4372,042,873 - 72,044,802 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera373,018,806 - 73,043,742 (-)NCBICelera
Cytogenetic Map3q24NCBI
OR5D3P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,723,776 - 55,729,621 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,723,776 - 55,729,621 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,491,252 - 55,497,097 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,250,466 - 55,251,114 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,835,754 - 52,836,402 (+)NCBICelera
Cytogenetic Map11q11NCBI
HuRef1151,822,828 - 51,823,476 (+)NCBIHuRef
CHM1_11155,359,176 - 55,359,824 (+)NCBICHM1_1
T2T-CHM13v2.01155,662,066 - 55,667,911 (+)NCBIT2T-CHM13v2.0
Or5d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39288,174,136 - 88,175,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl288,172,476 - 88,176,836 (-)EnsemblGRCm39 Ensembl
GRCm38288,343,792 - 88,344,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl288,342,132 - 88,346,492 (-)EnsemblGRCm38mm10GRCm38
MGSCv37288,183,949 - 88,185,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36288,144,557 - 88,148,048 (-)NCBIMGSCv36mm8
Celera289,933,240 - 89,934,539 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.98NCBI
OR5D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11840,154,670 - 40,158,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1839,644,798 - 39,645,669 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01840,850,284 - 40,851,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1840,850,284 - 40,851,225 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11840,467,574 - 40,468,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01840,014,217 - 40,015,088 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01840,600,582 - 40,601,454 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Or5d3
324 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063285203   ⟹   XP_063141273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8394,190,302 - 94,215,417 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063141273 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063141273   ⟸   XM_063285203


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-48916 BioCyc
NCBI Gene 688691 ENTREZGENE
PhenoGen Or5d3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-18 Or5d3  olfactory receptor family 5 subfamily D member 3  LOC688691  similar to Olfactory receptor 5D13  Name and Symbol changed 629549 APPROVED
2008-01-09 LOC688691  similar to Olfactory receptor 5D13  LOC686755  similar to Olfactory receptor 5D13  Data merged from RGD:1593707 1643240 APPROVED
2006-11-20 LOC686755  similar to Olfactory receptor 5D13      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688691  similar to Olfactory receptor 5D13      Symbol and Name status set to provisional 70820 PROVISIONAL