Lypd6b (LY6/PLAUR domain containing 6B)

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Gene: Lypd6b (LY6/PLAUR domain containing 6B) Rattus norvegicus

Analyze

Symbol:

Lypd6b

Name:

LY6/PLAUR domain containing 6B

RGD ID:

1562767

Description:

Predicted to have acetylcholine receptor regulator activity. Predicted to be involved in regulation of neurotransmitter receptor activity. Predicted to localize to integral component of membrane and plasma membrane. Orthologous to human LYPD6B (LY6/PLAUR domain containing 6B); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC362133; ly6/PLAUR domain-containing protein 6B; RGD1562767; similar to RIKEN cDNA 2310010M24

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LYPD6B (LY6/PLAUR domain containing 6B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Lypd6b (LY6/PLAUR domain containing 6B)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Lypd6b (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LYPD6B (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LYPD6B (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lypd6b (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LYPD6B (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LYPD6B (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lypd6b (LY6/PLAUR domain containing 6B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lypd6b (LY6/PLAUR domain containing 6B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	LYPD6B (LY6/PLAUR domain containing 6B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	lypd6b (LY6/PLAUR domain containing 6B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	34,199,101 - 34,360,770 (+)	NCBI
Rnor_6.0 Ensembl	3	35,271,786 - 35,437,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	35,271,785 - 35,437,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	40,397,603 - 40,555,551 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	30,849,359 - 30,869,056 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	3	32,384,248 - 32,545,513 (+)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chloroprene (ISO)

copper atom (ISO)

copper(0) (ISO)

decabromodiphenyl ether (EXP)

dorsomorphin (ISO)

furan (EXP)

genistein (ISO)

manganese(II) chloride (EXP)

nickel sulfate (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of neurotransmitter receptor activity (IEA)

Cellular Component

integral component of membrane (IEA)

plasma membrane (IEA)

Molecular Function

acetylcholine receptor regulator activity (IBA,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:26586467

Genomics

Comparative Map Data

Lypd6b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	34,199,101 - 34,360,770 (+)	NCBI
Rnor_6.0 Ensembl	3	35,271,786 - 35,437,296 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	35,271,785 - 35,437,296 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	40,397,603 - 40,555,551 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	30,849,359 - 30,869,056 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	3	32,384,248 - 32,545,513 (+)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

LYPD6B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	149,038,107 - 149,215,262 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	149,038,695 - 149,215,262 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	149,895,213 - 150,071,776 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	149,603,227 - 149,780,018 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	2	143,508,885 - 143,685,705 (+)	NCBI
Cytogenetic Map	2	q23.2	NCBI
HuRef	2	141,793,209 - 141,970,636 (+)	NCBI		HuRef
CHM1_1	2	149,900,822 - 150,077,602 (+)	NCBI		CHM1_1

Lypd6b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	49,677,380 - 49,838,861 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	49,677,700 - 49,838,861 (+)	Ensembl
GRCm38	2	49,787,340 - 49,948,849 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	49,787,688 - 49,948,849 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	49,643,206 - 49,804,366 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	49,609,695 - 49,770,855 (+)	NCBI			mm8
Celera	2	51,460,729 - 51,622,118 (+)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI

Lypd6b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	15,014,264 - 15,027,648 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	14,865,736 - 15,028,655 (+)	NCBI	ChiLan1.0	ChiLan1.0

LYPD6B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	153,478,374 - 153,575,462 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	153,479,334 - 153,576,190 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	10,647,871 - 10,825,062 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

LYPD6B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	50,692,220 - 50,855,061 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Lypd6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936469	28,098,841 - 28,245,200 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LYPD6B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	2,952,546 - 2,972,920 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	2,957,051 - 3,179,409 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	2,443,118 - 2,477,085 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LYPD6B
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	34,511,293 - 34,644,953 (+)	NCBI
ChlSab1.1 Ensembl	10	34,634,763 - 34,644,939 (+)	Ensembl

Lypd6b
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624866	1,708,769 - 1,960,396 (+)	NCBI

Position Markers

D3Rat47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RGSC_v3.4	3	30,835,250 - 30,835,368	UniSTS	RGSC3.4
RGSC_v3.4	3	30,835,249 - 30,835,368	RGD	RGSC3.4
RGSC_v3.1	3	30,731,621 - 30,731,740	RGD
Celera	3	32,512,845 - 32,512,963	UniSTS
RH 3.4 Map	3	511.02	RGD
RH 3.4 Map	3	511.02	UniSTS
SHRSP x BN Map	3	16.3599	UniSTS
SHRSP x BN Map	3	16.3599	RGD
Cytogenetic Map	3	q12	UniSTS

D3Got206

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	35,270,054 - 35,270,211	NCBI	Rnor6.0
Rnor_5.0	3	40,396,403 - 40,396,560	UniSTS	Rnor5.0
RGSC_v3.4	3	30,771,423 - 30,771,580	UniSTS	RGSC3.4
Celera	3	32,382,555 - 32,382,673	UniSTS
Cytogenetic Map	3	q12	UniSTS

RH141888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	35,383,246 - 35,383,462	NCBI	Rnor6.0
Rnor_5.0	3	40,503,785 - 40,504,001	UniSTS	Rnor5.0
Celera	3	32,491,894 - 32,492,110	UniSTS
RH 3.4 Map	3	413.32	UniSTS
Cytogenetic Map	3	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	37891710	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	39773425	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	2631421	48562146	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	6000748	51687917	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	6000748	51687917	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	10119318	79772001	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	41510346	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	48562146	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	14090411	48562146	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	14090411	48562146	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	14090411	48562146	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	14090411	48562146	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	14090411	48562146	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	14090411	48562146	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	18023664	63023664	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat
631685	Bp118	Blood pressure QTL 118	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	24655225	69655225	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	25633366	39248391	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	28136728	45772990	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	28136728	51687917	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	28136728	51687917	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	28136728	51687917	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	3	28136728	51687917	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	28136728	51687917	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	29321714	74321714	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	29682732	74682732	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29682732	74682732	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	29682732	74682732	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	29682732	74682732	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	29682732	74682732	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	29908255	74908255	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	29908255	74908255	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31103589	72989078	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31103589	72989078	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31103589	72989078	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31103589	72989078	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31103589	72989078	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31103589	72989078	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	32130997	77130997	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	32130997	77130997	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33477354	62922975	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	81136227	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	108914061	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	34394121	103141944	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	169
Count of miRNA genes:	121
Interacting mature miRNAs:	147
Transcripts:	ENSRNOT00000065989
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									19	20	9
Low	1	4	16		8				51	15	21	8
Below cutoff	2	20	6	6	6	6	7	7	4		9	3	7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065989 ⟹ ENSRNOP00000063299

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	35,271,786 - 35,437,296 (+)	Ensembl

RefSeq Acc Id:

NM_001134580 ⟹ NP_001128052

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,599 - 34,360,770 (+)	NCBI
Rnor_6.0	3	35,271,786 - 35,437,296 (+)	NCBI
Rnor_5.0	3	40,397,603 - 40,555,551 (+)	NCBI
RGSC_v3.4	3	30,849,359 - 30,869,056 (+)	RGD
Celera	3	32,384,248 - 32,545,513 (+)	RGD

Sequence:

show sequence

GGTCACAGTCATCGCCAGCCCGGAGCGGGTGCCTGGAGCCCAGGCCGGGAACCGAGCGAGGCGC
CGGGAGCCGGCCGGCAGCGACTGTGCAGGATTACGAGAAAAAAGAACCTGGATTCCACAAGTTC
AGATACCAGTTACAACATTGCTCCACCCCTCTCCCCAGGCCAAATCCATCAGCCAGAATAATCC
CTGATTACAGCCATGCTGAGCGGGTAAATAGCAAAGGGCAGTTGGAATTTTGGTGTCAAAGGCC
TGCTTTCTAGAACTCTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGAC
TGACTACCAGGCTGTCTTTCTTAAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGG
AGGAAGACTTGGGTGAGGAAGGAGCTTCCACAGTAGATGGAATGTTTCAGTCCAAGGATGCCTG
GAAATTGTTGTCCCACATGGTCTAGTTTTCAGAGACACACGACTTTGACCTGCCCAGTCAAGGA
GTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCA
GAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGC
CATTCCCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCG
ATGGGCAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACC
AGCCACGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTG
GCTGCCGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTG
CAATGTAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACA
TCTGGCAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGC
TTCCCTTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAG
AGTGGACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACT
GCAAAGTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCA
TGAGGACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCA
TTCTGTCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGAC
CAGGCCTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACT
CTCTGGTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCA
GTCCTTACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGAT
AAATGGTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTG
GAGAGCAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTT
CAGCAGTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATA
GGAGCTCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACT
GCAGACAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAA
GGGAAAGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCC
AATACCCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGG
TTCAATTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAA
GATCCAAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCA
GTTAAAATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGA
ATTATATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATT
TACCAATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAA
AATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_008761763 ⟹ XP_008759985

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,383,746 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CCAAGCGGGTTGGCCACTCCTTTTTGCTATTAAATTTTCTTGTTGGAGAGCCATGCTCACCCGA
GGTTTCCCACGGAGACTGCTTACTCTCTTTGTTTGCTATGGAGATAAGAGTTTTGAGTGGGCAG
GCAGCAGGGTAGAGGCAGATGTGCTTTCTCTGTGACTTTCATAGGCCATTCTGTCTGCTGGGGT
GGAACCAATGTTTCATGGTTCTGTGGCTTCTGACTTCTGGGCATCAGCCATTTTGATGGAAGCT
CATTATCCTGGGAAGAGGGTCAGCAATGACACGCCAAATCGTAGGCTTGCAGACGGTGTTGATA
TTAGAGTTAAGAGTGTACCCTGACTACAGACTTGGGGATGCTTTAATCTCACTTCTACTTTAAA
TATGAAGACCACTAATTAAGATTGTGTGGAGGGATTTACCAAACCCTTAGGGAAGAAAAACTAT
TTAATAATTTTTGTTTCCTTGCTACCGCTGATGATTCTCTAGCTAGGGTTTGTATAATTAATTG
GCTCCTGGTGGGTGTCTCTTCTGCTCTTCCACATTCACTAGTCCCAGGGTAAAGTTAGTACTTT
AAAAAATTAAGACCGTTCACTTCGCAACTGCTCAGTAATTACCTGGTGGGTTAATTATATAAAA
ATGAGTTCCGGGATAAACAAAACATGGTATGCAGTTGAAGGACTATTATTTATATATGAGAGAG
GAGTGGTATTCAGATACATGCTGTAGCATGGATGAATGCTGAGGACTCTGGGCAAATGGAAACA
GTCTAGAAATGAAAGCATGACTTTGTGATTATGAACTCACCCAAGGACACAGAGTTATGGCGAT
CATAGACCTCAGCAGGGCTTGGGGAGCAGGAAGGGGGCTTACTGGTCAGTGGCTTCAGGGTTCC
TGTTTGAAGCTATGGAACGTTCTAGAAAGGGAAAAAAGGGAAAGTAGCAACAGTGTTCAACCTT
CAGTGGCATTGAGTCAGAAGCTATAAAATGGCTAATGGGTATGAGTACTTAGAAGCCTTAAAAA
CCTGATTCTGACACAAGAAAGGTATATAGGACATGTACACGTATAAACATACAAATTGCTTTTT
TTTTTTAAAAAAAAATTCACTTAAGTGTTTATTACCTGAATTTCCAGACCTGCTTGTGACAGTT
TATCTGTGGATTTACTCCTGGTTGTACAGAGAAATCTTTCATGTCATCTTCTGGCCAGGATGAC
AGCCTCAGACATCTGAGGTCTAATTCCCACCAAACTTTGGAGAAATCATGCTATTTATGGAAAA
TATTTCAAGAATCTGGAATCCCTTAATCCTTCTAGAAGTAGTAATTTTATCCCTGGAACAAGCC
AGATGATCAGGTTGCTGAATGCTTTCTGCTTGGGTGGGATTTGTTTTCCTGTTTGTACCCCTTG
CTAAATCATGCTTGTGCTGTCCCCCGTCCCCCATGAAGCAAGTATATAAAGTTAGCTCTTCCTT
TAAAAAAAGTTAGATGACATATTAGTTAGGGTCCCTTCAGAGAATCCTGTTGGTGACGATATAA
AAGAGGGATTTATTTTAAGGACTGTATCGGGTCTGGCAAATATGAAGTTCCAAGAATGGGCCAG
TGAGCTGAGGTTCTGCAGAAAAGCTGTTGTTGACATGCTGAGTTTCATAGTAATTTAGACGCAG
AGTTCCTTCTTGAGGGGCTTAGCTTTTCCTCTTAGATTCTCCTTGATTGAATAGAAAGGTGATT
CACTGACTCAAACGTTCACACATTGTTAAAAAAAAAAAAGAAAGAAAAGGATATTCCCTCCACA
TCTGGACTGATGTTTAACAATGAGCACCAATATCCTTAGCCAAACTGTCCAAAGAACTATCCTA
GATAGGGATGTGTCAATCACAGAATCATCTTTAACCGGGCATATAACCTGTCTGTTCTATTTGC
TCCTTTGAGTGCTCGCAGAGGGATATTCCAGTTCCCTCCCACCCCCTCATCTAGGTTCAAGTCT
CATGTTGTCATTATTTCATCAGCTGGGTAGGGATGTCTTCCAAACCGAGGTGGGTTAAGTGGTA
TAGAGTCTCCATTGTGGATGGGTTGGAGGTGTGACTGCAGCAGCCTGCCAAACGGGCTGGTGTA
AGTCCGTTCTACGGTGAGTTCTGCCAGTCAGCCTTTTGGGAATCAGCCATTTTGTGGAGGGATT
TGATGGGGTGCATGATTTCACTATTATTGCATCCCCAATTAGCCGGGGCCCAGGTGTGTGTTAA
TAAAGGTTAGCTCACTCTCTGTTACACCAACGACCCCACCTTGACTTGATTCCAGGGGTTTTGT
GCATTTGATATTGTTTGATTCATTATGTGGTTGCTGCTCTATTCTGAAATGTCTTCAGACATCT
GGAGACGACCTTTGTTGTTGTTGTTAGAAAACATCTCAGCAGCTGAAGGATGGCACTGAGCAGT
GGCAGCTCTGACTTAGTCCTTTTCTCTCTGGTAGACTGGCTACTTCGTTTGATGCAGACCTGTT
CCCTGCGGCTTAGAGACTGACTACCAGGCTGTCTTTCTTAAGCTGTGTAACCTTGGGCAAGTTG
CTATCCTCTCTCTGAACTTCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTG
GCTGTGCTGTGACGATTACATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGA
ATGCTAACTTAAAATGGAAGTTACTCTACATGAGGTGTGCTTGAATGAGAGAAGCAAGGAATAG
AAGAAGAGGAGGAAGACTTGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTC
TCAACAGACACAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGG
TGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATG
AGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCA
GAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAA
CTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTC
CCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGG
CAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCA
CGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGC
CGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATG
TAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGG
CAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCC
TTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGG
ACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAA
GTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGG
ACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTG
TCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGC
CTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTG
GTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCT
TACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATG
GTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAG
CAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCA
GTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGC
TCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGA
CAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAA
AGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATAC
CCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAA
TTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCC
AAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAA
AATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTAT
ATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCA
ATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTT
TATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_008761768 ⟹ XP_008759990

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,421,191 - 35,437,296 (+)	NCBI

Sequence:

show sequence

TCTGTCTCTTTGGGATATCACACTTTAAAATTAGAAAGTATCTGAGTTTCAAACTTACTGGTCA
TATATTGACTCACAATTAGATTTAAACTGATTTGCATAATGCAATTACTTTATCTATCATTAGT
GCTATTTTAAGAATCTGGTTACATACCACAGATAAAGAATTACATCTTTGGCTTCACCAAATTT
CCAGCTTTATGCTTAGAAAGGTCACTGCTGTGAGGTTTTGATCCTGAGTTTGGTGAAAACCTTT
TCGGTTATATTTATTTTTAAAGCAGTATAATGGGAATCTAGAATATTACATGAATACCATATTA
CATTTCTGAGTCCTAATGCATAGCTGGAATTCACCATTAATCTACCTCCATCAGTACCATACTT
TATTAGAAGTGGAGGGCGAGGTTCACTTGGTTGTAATAGGAGGGATTTCTGAGTCCTCTTAAGA
TGTTAGTTCCCAGACCTCAACATTGTCCCACTTGAGACAAATACCAAGTAAGTTTGCACAATTG
TATCTCTTGATCTGATCTTTAGTCTGCTGGTAATGACATGAATAGGAAAGGAAGAGAGAGAGAG
GGGGGGGGAGAAGATGGTAAATTTGGTGCTTACGATTCTTAAGGTTAAATAAAAATAGTTTATG
TACTAATAGTTACTCTTAATTTGACCCACAACCTAAGTTACCAGCACAACTTCAGCCCACTTTC
CTTATTACTAATGGGGACAATACTTCTTAGCCCTGTGATTGCCTGATTAATAAATATAGGTCCG
GAACTTTATTCTGGGTCTTTCTGAAGCTCAGGCTGTTGTTTTTCTTTCCCTCGAAGGTTGTCAG
CCACAACTTCAGTGGCTCATACTGTCTTTTCCTACTAGAAATATGTGGGAACTTGAGGATTTGC
TCTTTCTTGTTTACTGTTTTAAACTCAGCACTCAGCACTCAGCATTGCTGTAAGGGTGTGACTT
CAAATTACGAACTTTCAAGATGTGGAGAAGCAGAAACCCTCCACAAATCTTATGTCACATAGAG
AGCAAACGGTCCAAGAAGCTAGAAACTGAAGGCCTGGAAACTAGCTCCCAAACCCTGGCGAGGC
TCGGCAGCCAGCCTTCAGCTCCTCTGTGGGGAAGTGGGTAGAGGGCACATCCCATGACATTCCT
CCAAAATTTAATAGGGCCACGAACGTCTCTTTTCACCACCTTGGTTTCCCAGCCAGAAGCAGCC
CATACCCTCCTCAATAAAATTTCAGCACCCATTTCGAATTTCCACTTGGCCTTCAGTCCTTTTT
CCAAGGGAAGCCAGGCTTATTAAGTGTGAGTGGTGCTTGCAGGGAGGTGTGGATGTGAGTGTGG
ACTGGGATGTTGGACTTAGATGGGCTGCTTCCCTTCAATTATCTGTTCGTTTATTTCATTAGCA
GCTGAAGGTACTCCCGTGCTTGCTGATTCACGTTTTAGGAATCCCATAAGAAATGCAGTGCGCT
GCACTTTGGTCTATGGGTTTCTCTTGGGAGTCCGTCATTTAACAGCCTTGGATGCCCAGCCAGC
TCCTTAGTGCAGATGCCTCTGTTTGACTCACTACGAAAGACGCTCTGTCCAGGAACAACAAACA
AGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACATTTGCGGTTTTGTTCAACTTGATTT
TCCTGGATCCGGATCTTTATGGTGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCT
TGTTGACGTCTAAAACCAAATGAGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTG
ACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTC
AGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCC
CCCTCTCGACCCCACGCCATTCCCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGAT
AATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGA
CAGTTCATCACTTCACCAGCCACGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAA
TGAATGTCATTTTGTTGGCTGCCGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGC
TGTGAAGGAATGATCTGCAATGTAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGA
TGCACGCGCAGAGGACATCTGGCAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCT
GGCCTGGCTCTTCATGCTTCCCTTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCA
ATGTAAAGCACAGAAAGAGTGGACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAA
AGAAGATACTTTGGACTGCAAAGTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGG
GGTCACAGCACTGGGCATGAGGACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCT
GGTCTACGGATGCTGCATTCTGTCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACA
GTAAGCCCTGGCCTGACCAGGCCTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGA
GGCTGCTGGGTCAGACTCTCTGGTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTT
CTGCCCACGGGAAAGCAGTCCTTACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGAC
GATCCGTTTATAAAGATAAATGGTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTA
GTTTGGGGCCTGTGTTGGAGAGCAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGAT
GGGCTGGAGAGATGCTTCAGCAGTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGA
TTCTCAGCACTCACATAGGAGCTCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCT
TCTGGCCTCTGAGTACTGCAGACAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAA
TAATTCTTCATTATAAAGGGAAAGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCA
TGCACATAAGATTCCCCAATACCCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAG
ATCCCATTTCCTAAAGGTTCAATTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTT
AACCCTGTAACAGTCAAGATCCAAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTG
TAGGAGGGAAATATCCAGTTAAAATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGT
GGGGTGCAAACCTTTGAATTATATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGC
CTCTAATGAAGTACATTTACCAATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACAT
GCTGTTTAAAAGAATAAAATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_008761769 ⟹ XP_008759991

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,897 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGGGCGACCGCGTGCGGAGCCCACAGAGCAGGGGCTGGGAGGGGCGCGCGGCTGCGGCGAGCA
CTGCGAAACGCCCCGCGGAGCCCCGGGACTCTCCGAGTCGCGGGGTAGCGCAGCTGCCCACATC
TGGATGGGGTGGGGGGGCGGCATCCGAGCGGGCACCGCAGGGAGCTGCGCGGGTCTCCCCAGTG
ACGCCGGGATTGGAAGCTAAGGCTGAGGCTGGGGCCCGACTGTACGGCCAAGTGCGAGCCAGCT
CCCGCCCTTTCCTCTGCGGCGCTCCAGTCCGGCCCGCGGGGGCCGCAGTCTCCGCTGCGCTGCC
TGGAGCTTGACTTTGTTGTTAAATCACTAACCAGCACATTGGTTAGTTTAGTTACGTAGGCTTC
GGTAAAGCGGAGTCGGCGAGGCTGCCCTTACTCCAGGGGGCATACATAGTAAGTCAGCGTGGGT
GTCTGTGCCCGAGGGTGTTGTGGGGTGAAGGGATACTGCCCACTTCCCTCCCAGTGCCTGGCGA
TCGGAGTGATAAAGTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACT
GACTACCAGGCTGTCTTTCTTAAGCTGTGTAACCTTGGGCAAGTTGCTATCCTCTCTCTGAACT
TCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTGGCTGTGCTGTGACGATTA
CATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGAATGCTAACTTAAAATGGA
AGTTACTCTACATGAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACT
TGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACAT
TTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGACACACGACTTTGACCTGC
CCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCT
TGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCT
CGACCCCACGCCATTCCCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTAT
AACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTC
ATCACTTCACCAGCCACGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATG
TCATTTTGTTGGCTGCCGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAA
GGAATGATCTGCAATGTAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACG
CGCAGAGGACATCTGGCAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTG
GCTCTTCATGCTTCCCTTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAA
AGCACAGAAAGAGTGGACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGA
TACTTTGGACTGCAAAGTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCAC
AGCACTGGGCATGAGGACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTA
CGGATGCTGCATTCTGTCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGC
CCTGGCCTGACCAGGCCTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGC
TGGGTCAGACTCTCTGGTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCC
ACGGGAAAGCAGTCCTTACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCG
TTTATAAAGATAAATGGTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGG
GGCCTGTGTTGGAGAGCAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTG
GAGAGATGCTTCAGCAGTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCA
GCACTCACATAGGAGCTCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGC
CTCTGAGTACTGCAGACAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTC
TTCATTATAAAGGGAAAGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACA
TAAGATTCCCCAATACCCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCA
TTTCCTAAAGGTTCAATTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCT
GTAACAGTCAAGATCCAAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAG
GGAAATATCCAGTTAAAATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTG
CAAACCTTTGAATTATATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAA
TGAAGTACATTTACCAATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTT
TAAAAGAATAAAATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591885 ⟹ XP_017447374

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,897 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGGGCGACCGCGTGCGGAGCCCACAGAGCAGGGGCTGGGAGGGGCGCGCGGCTGCGGCGAGCA
CTGCGAAACGCCCCGCGGAGCCCCGGGACTCTCCGAGTCGCGGGGTAGCGCAGCTGCCCACATC
TGGATGGGGTGGGGGGGCGGCATCCGAGCGGGCACCGCAGGGAGCTGCGCGGGTCTCCCCAGTG
ACGCCGGGATTGGAAGCTAAGGCTGAGGCTGGGGCCCGACTGTACGGCCAAGTGCGAGCCAGCT
CCCGCCCTTTCCTCTGCGGCGCTCCAGTCCGGCCCGCGGGGGCCGCAGTCTCCGCTGCGCTGCC
TGGAGCTTGACTTTGTTGTTAAATCACTAACCAGCACATTGGTTAGTTTAGTTACGTAGGCTTC
GGTAAAGCGGAGTCGGCGAGGCTGCCCTTACTCCAGGGGGCATACATAGTAAGTCAGCGTGGGT
GTCTGTGCCCGAGGGTGTTGTGGGGTGAAGGGATACTGCCCACTTCCCTCCCAGTGCCTGGCGA
TCGGAGTGATAAAGTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACT
GACTACCAGGCTGTCTTTCTTAAGCTGTGTAACCTTGGGCAAGTTGCTATCCTCTCTCTGAACT
TCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTGGCTGTGCTGTGACGATTA
CATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGAATGCTAACTTAAAATGGA
AGTTACTCTACATGAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACT
TGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACAT
TTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGGTGGAATAATTGACCTTTC
CGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTGACCCAGTCCGTGT
TTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCC
ACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAA
CATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTCCCAAACAGTTTCAAGTGT
TTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTC
CGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCACGGAAGAAGTACGTCCAT
CACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGCCGACATAGCCGAGATTCG
GAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATGTAGAGTTGCCCACCAACC
ATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGGCAGCAGTGTCTCCAATGT
CCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCTGTGATGCTGCTGT
CCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGGACCAGCGGACTCTGGAGC
CAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAAGTAGAAGGCAAAGGTTTG
CTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGGACTTGGTAGGAACCAAGA
GGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTGTCAGCTCTACAGGGGATC
CGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGCCTTCCCCTGGAACGACTT
TTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTGGTTTCTGTGACTAGCTCA
GAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCTTACTGTGTTAATGTTCTT
TTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATGGTTTGTTTGGGCTCACGG
TTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAGCAAGTAGCCACTCATAAT
GGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCAGTTAAGGGGCAGTGACTG
ATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGCTCACAATTGATAATTCCA
ATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGACAGGTGGTGCAAACATAT
ATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAAAGGAAGAAAAAAAAGAAA
GAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATACCCTTCAAGGTCATGTTCC
CAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAATTACCTCCTTAATGGCAT
CAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCCAAACAATAGTACATACTA
ACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAAAATTCTATGATTCCATTT
GCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTATATAGTGTAATGCATGCTG
TGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCAATGTCATTAAATTTGTGT
TTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591886 ⟹ XP_017447375

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI
Rnor_6.0	3	35,271,785 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGTCACAGTCATCGCCAGCCCGGAGCGGGTGCCTGGAGCCCAGGCCGGGAACCGAGCGAGGCG
CCGGGAGCCGGCCGGCAGCGACTGTGCAGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTG
CGGCTTAGAGACTGACTACCAGGCTGTCTTTCTTAAGCTGTGTAACCTTGGGCAAGTTGCTATC
CTCTCTCTGAACTTCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTGGCTGT
GCTGTGACGATTACATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGAATGCT
AACTTAAAATGGAAGTTACTCTACATGAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAA
GAGGAGGAAGACTTGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAAC
AGACACAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGGTGGAA
TAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTG
ACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATG
CTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGG
TGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTCCCAAA
CAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAA
GACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCACGGAA
GAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGCCGACA
TAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATGTAGAG
TTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGGCAGCA
GTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCT
GTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGGACCAG
CGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAAGTAGA
AGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGGACTTG
GTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTGTCAGC
TCTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGCCTTCC
CCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTGGTTTC
TGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCTTACTG
TGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATGGTTTG
TTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAGCAAGT
AGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCAGTTAA
GGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGCTCACA
ATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGACAGGT
GGTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAAAGGAA
GAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATACCCTTC
AAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAATTACC
TCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCCAAACA
ATAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAAAATTC
TATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTATATAGT
GTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCAATGTC
ATTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTTTATGC
TGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591887 ⟹ XP_017447376

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,393,607 - 35,437,296 (+)	NCBI

Sequence:

show sequence

ACTCTGTTGTCAAAGGTGGTCACCAAGGGTCCAACCAAAGTGCGGCACTCTAATGGTAACCTTA
CACTGCTCTGGATGTCCATCCTCAGGGAGTCTGAAGTAGAGACAGAAGTTTCTCATCTGTGTAA
CCTTGGGCAAGTTGCTATCCTCTCTCTGAACTTCAGACTCCTCCTGTGTGAATTGGGGATAATA
ATAGCTCCCACCTGGCTGTGCTGTGACGATTACATGATTCATTGCGTCGGGCGTCTGACTCTTA
CAAAGCCTCAATGAATGCTAACTTAAAATGGAAGTTACTCTACATGAGGTGTGCTTGAATGAGA
GAAGCAAGGAATAGAAGAAGAGGAGGAAGACTTGGGTGAGGAAGGAACAACAAACAAGACAAGG
GATTTGGGAATGTCTCAACAGACACAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGAT
CCGGATCTTTATGGTGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACG
TCTAAAACCAAATGAGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCC
AGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTG
GTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCG
ACCCCACGCCATTCCCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAA
CTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCAT
CACTTCACCAGCCACGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTC
ATTTTGTTGGCTGCCGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGG
AATGATCTGCAATGTAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCG
CAGAGGACATCTGGCAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGC
TCTTCATGCTTCCCTTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAG
CACAGAAAGAGTGGACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATA
CTTTGGACTGCAAAGTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAG
CACTGGGCATGAGGACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACG
GATGCTGCATTCTGTCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCC
TGGCCTGACCAGGCCTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTG
GGTCAGACTCTCTGGTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCAC
GGGAAAGCAGTCCTTACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTT
TATAAAGATAAATGGTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGG
CCTGTGTTGGAGAGCAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGA
GAGATGCTTCAGCAGTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGC
ACTCACATAGGAGCTCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCT
CTGAGTACTGCAGACAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTCTT
CATTATAAAGGGAAAGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATA
AGATTCCCCAATACCCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATT
TCCTAAAGGTTCAATTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGT
AACAGTCAAGATCCAAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGG
AAATATCCAGTTAAAATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCA
AACCTTTGAATTATATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATG
AAGTACATTTACCAATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTA
AAAGAATAAAATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591888 ⟹ XP_017447377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,897 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGGGCGACCGCGTGCGGAGCCCACAGAGCAGGGGCTGGGAGGGGCGCGCGGCTGCGGCGAGCA
CTGCGAAACGCCCCGCGGAGCCCCGGGACTCTCCGAGTCGCGGGGTAGCGCAGCTGCCCACATC
TGGATGGGGTGGGGGGGCGGCATCCGAGCGGGCACCGCAGGGAGCTGCGCGGGTCTCCCCAGTG
ACGCCGGGATTGGAAGCTAAGGCTGAGGCTGGGGCCCGACTGTACGGCCAAGTGCGAGCCAGCT
CCCGCCCTTTCCTCTGCGGCGCTCCAGTCCGGCCCGCGGGGGCCGCAGTCTCCGCTGCGCTGCC
TGGAGCTTGACTTTGTTGTTAAATCACTAACCAGCACATTGGTTAGTTTAGTTACGTAGGCTTC
GGTAAAGCGGAGTCGGCGAGGCTGCCCTTACTCCAGGGGGCATACATAGTAAGTCAGCGTGGGT
GTCTGTGCCCGAGGGTGTTGTGGGGTGAAGGGATACTGCCCACTTCCCTCCCAGTGCCTGGCGA
TCGGAGTGATAAAGTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACT
GACTACCAGGCTGTCTTTCTTAAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGA
GGAAGACTTGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACAGACA
CAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGGTGGAATAATT
GACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTGACCCA
GTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGCTGCT
CCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGTGTTT
GCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTCCCAAACAGTT
TCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAA
GTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCACGGAAGAAGT
ACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGCCGACATAGCC
GAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATGTAGAGTTGCC
CACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGGCAGCAGTGTC
TCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCTGTGAT
GCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGGACCAGCGGAC
TCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAAGTAGAAGGCA
AAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGGACTTGGTAGG
AACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTGTCAGCTCTAC
AGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGCCTTCCCCTGG
AACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTGGTTTCTGTGA
CTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCTTACTGTGTTA
ATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATGGTTTGTTTGG
GCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAGCAAGTAGCCA
CTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCAGTTAAGGGGC
AGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGCTCACAATTGA
TAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGACAGGTGGTGC
AAACATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAAAGGAAGAAAA
AAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATACCCTTCAAGGT
CATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAATTACCTCCTT
AATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCCAAACAATAGT
ACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAAAATTCTATGA
TTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTATATAGTGTAAT
GCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCAATGTCATTAA
ATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTTTATGCTGATG
TGATTTA

hide sequence

RefSeq Acc Id:

XM_017591889 ⟹ XP_017447378

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,393,607 - 35,437,296 (+)	NCBI

Sequence:

show sequence

ACTCTGTTGTCAAAGGTGGTCACCAAGGGTCCAACCAAAGTGCGGCACTCTAATGGTAACCTTA
CACTGCTCTGGATGTCCATCCTCAGGGAGTCTGAAGTAGAGACAGAAGTTTCTCATGTGTGCTT
GAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACTTGGGTGAGGAAGGAACAACAAACA
AGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACATTTGCGGTTTTGTTCAACTTGATTT
TCCTGGATCCGGATCTTTATGGTGGAATAATTGACCTTTCCGTGCAGAAGCAGAACATACCTCT
TGTTGACGTCTAAAACCAAATGAGCTGACCCAGTCCGTGTTTTCATGGCAGACACACGACTTTG
ACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTC
AGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCTAAGAACATCAACTTCTACAATGTGAGGCC
CCCTCTCGACCCCACGCCATTCCCAAACAGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGAT
AATTATAACTGCAATCGATGGGCAGAAGACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGA
CAGTTCATCACTTCACCAGCCACGGAAGAAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAA
TGAATGTCATTTTGTTGGCTGCCGACATAGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGC
TGTGAAGGAATGATCTGCAATGTAGAGTTGCCCACCAACCATACAAATGCAGTCTTTGCGGTGA
TGCACGCGCAGAGGACATCTGGCAGCAGTGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCT
GGCCTGGCTCTTCATGCTTCCCTTGCTGTGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCA
ATGTAAAGCACAGAAAGAGTGGACCAGCGGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAA
AGAAGATACTTTGGACTGCAAAGTAGAAGGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGG
GGTCACAGCACTGGGCATGAGGACTTGGTAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCT
GGTCTACGGATGCTGCATTCTGTCAGCTCTACAGGGGATCCGACCAGTATCGTTGACAGCAACA
GTAAGCCCTGGCCTGACCAGGCCTTCCCCTGGAACGACTTTTTGACCTCATGGACTCCCTCAGA
GGCTGCTGGGTCAGACTCTCTGGTTTCTGTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTT
CTGCCCACGGGAAAGCAGTCCTTACTGTGTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGAC
GATCCGTTTATAAAGATAAATGGTTTGTTTGGGCTCACGGTTTTGGAGATTGCAGTATATACTA
GTTTGGGGCCTGTGTTGGAGAGCAAGTAGCCACTCATAATGGAAACTCGAAAGGGGGAGAGGAT
GGGCTGGAGAGATGCTTCAGCAGTTAAGGGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGA
TTCTCAGCACTCACATAGGAGCTCACAATTGATAATTCCAATGCCAGGAGATCCAATGCTCTCT
TCTGGCCTCTGAGTACTGCAGACAGGTGGTGCAAACATATATGCAGGTAAAACACCCATATAAA
TAATTCTTCATTATAAAGGGAAAGGAAGAAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCA
TGCACATAAGATTCCCCAATACCCTTCAAGGTCATGTTCCCAACATCCTAAATCCTCCAACTAG
ATCCCATTTCCTAAAGGTTCAATTACCTCCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTT
AACCCTGTAACAGTCAAGATCCAAACAATAGTACATACTAACCACCTAGTTGATGAAAAAGCTG
TAGGAGGGAAATATCCAGTTAAAATTCTATGATTCCATTTGCCAATTATGAGATGGTTGGGGGT
GGGGTGCAAACCTTTGAATTATATAGTGTAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGC
CTCTAATGAAGTACATTTACCAATGTCATTAAATTTGTGTTTCCAGGAACCATGGGTGATACAT
GCTGTTTAAAAGAATAAAATTTTATGCTGATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591890 ⟹ XP_017447379

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,897 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGGGCGACCGCGTGCGGAGCCCACAGAGCAGGGGCTGGGAGGGGCGCGCGGCTGCGGCGAGCA
CTGCGAAACGCCCCGCGGAGCCCCGGGACTCTCCGAGTCGCGGGGTAGCGCAGCTGCCCACATC
TGGATGGGGTGGGGGGGCGGCATCCGAGCGGGCACCGCAGGGAGCTGCGCGGGTCTCCCCAGTG
ACGCCGGGATTGGAAGCTAAGGCTGAGGCTGGGGCCCGACTGTACGGCCAAGTGCGAGCCAGCT
CCCGCCCTTTCCTCTGCGGCGCTCCAGTCCGGCCCGCGGGGGCCGCAGTCTCCGCTGCGCTGCC
TGGAGCTTGACTTTGTTGTTAAATCACTAACCAGCACATTGGTTAGTTTAGTTACGTAGGCTTC
GGTAAAGCGGAGTCGGCGAGGCTGCCCTTACTCCAGGGGGCATACATAGTAAGTCAGCGTGGGT
GTCTGTGCCCGAGGGTGTTGTGGGGTGAAGGGATACTGCCCACTTCCCTCCCAGTGCCTGGCGA
TCGGAGTGATAAAGTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACT
GACTACCAGGCTGTCTTTCTTAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACA
GACACAAAACATTTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGGTGGAAT
AATTGACCTTTCCGTGCAGAAGCAGAACATACCTCTTGTTGACGTCTAAAACCAAATGAGCTGA
CCCAGTCCGTGTTTTCATGGCAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGC
TGCTCCTCTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGT
GTTTGCTAAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTCCCAAAC
AGTTTCAAGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAG
ACAAGTGGTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCACGGAAG
AAGTACGTCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGCCGACAT
AGCCGAGATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATGTAGAGT
TGCCCACCAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGGCAGCAG
TGTCTCCAATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCTG
TGATGCTGCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGGACCAGC
GGACTCTGGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAAGTAGAA
GGCAAAGGTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGGACTTGG
TAGGAACCAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTGTCAGCT
CTACAGGGGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGCCTTCCC
CTGGAACGACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTGGTTTCT
GTGACTAGCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCTTACTGT
GTTAATGTTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATGGTTTGT
TTGGGCTCACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAGCAAGTA
GCCACTCATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCAGTTAAG
GGGCAGTGACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGCTCACAA
TTGATAATTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGACAGGTG
GTGCAAACATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAAAGGAAG
AAAAAAAAGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATACCCTTCA
AGGTCATGTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAATTACCT
CCTTAATGGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCCAAACAA
TAGTACATACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAAAATTCT
ATGATTCCATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTATATAGTG
TAATGCATGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCAATGTCA
TTAAATTTGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTTTATGCT
GATGTGATTTA

hide sequence

RefSeq Acc Id:

XM_017591891 ⟹ XP_017447380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,897 - 35,437,296 (+)	NCBI

Sequence:

show sequence

CGGGGCGACCGCGTGCGGAGCCCACAGAGCAGGGGCTGGGAGGGGCGCGCGGCTGCGGCGAGCA
CTGCGAAACGCCCCGCGGAGCCCCGGGACTCTCCGAGTCGCGGGGTAGCGCAGCTGCCCACATC
TGGATGGGGTGGGGGGGCGGCATCCGAGCGGGCACCGCAGGGAGCTGCGCGGGTCTCCCCAGTG
ACGCCGGGATTGGAAGCTAAGGCTGAGGCTGGGGCCCGACTGTACGGCCAAGTGCGAGCCAGCT
CCCGCCCTTTCCTCTGCGGCGCTCCAGTCCGGCCCGCGGGGGCCGCAGTCTCCGCTGCGCTGCC
TGGAGCTTGACTTTGTTGTTAAATCACTAACCAGCACATTGGTTAGTTTAGTTACGTAGGCTTC
GGTAAAGCGGAGTCGGCGAGGCTGCCCTTACTCCAGGGGGCATACATAGTAAGTCAGCGTGGGT
GTCTGTGCCCGAGGGTGTTGTGGGGTGAAGGGATACTGCCCACTTCCCTCCCAGTGCCTGGCGA
TCGGAGTGATAAAGTGACTGGCTACTTCGTTTGATGCAGACCTGTTCCCTGCGGCTTAGAGACT
GACTACCAGGCTGTCTTTCTTAAGCTGTGTAACCTTGGGCAAGTTGCTATCCTCTCTCTGAACT
TCAGACTCCTCCTGTGTGAATTGGGGATAATAATAGCTCCCACCTGGCTGTGCTGTGACGATTA
CATGATTCATTGCGTCGGGCGTCTGACTCTTACAAAGCCTCAATGAATGCTAACTTAAAATGGA
AGTTACTCTACATGAGGTGTGCTTGAATGAGAGAAGCAAGGAATAGAAGAAGAGGAGGAAGACT
TGGGTGAGGAAGGAACAACAAACAAGACAAGGGATTTGGGAATGTCTCAACAGACACAAAACAT
TTGCGGTTTTGTTCAACTTGATTTTCCTGGATCCGGATCTTTATGCCACAAAGTCCTGGATACC
CCACTTCAGAACTGCTATGTGTTATGACTGTACTACAGAGGAGGAAGTTGAGCTTGGGAAGATA
CAGAAGCTCATCTAAGACACACGACTTTGACCTGCCCAGTCAAGGAGTTCAGAATGCTGCTCCT
CTGCCACATTCTAGCCGTGACCATCCTTCAGATCTTGGTCATCTCAGAAAACTGGGTGTTTGCT
AAGAACATCAACTTCTACAATGTGAGGCCCCCTCTCGACCCCACGCCATTCCCAAACAGTTTCA
AGTGTTTTACTTGTGAAAATGCAGGGGATAATTATAACTGCAATCGATGGGCAGAAGACAAGTG
GTGTCCGCAGGAAACACAGTATTGTTTGACAGTTCATCACTTCACCAGCCACGGAAGAAGTACG
TCCATCACTAAAAAGTGTGCCTCTAAAAATGAATGTCATTTTGTTGGCTGCCGACATAGCCGAG
ATTCGGAACACACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCTGCAATGTAGAGTTGCCCAC
CAACCATACAAATGCAGTCTTTGCGGTGATGCACGCGCAGAGGACATCTGGCAGCAGTGTCTCC
AATGTCCCCAGATCCTATCTCCCAGTGCTGGCCTGGCTCTTCATGCTTCCCTTGCTGTGATGCT
GCTGTCCCCAAGAGAAGCAGAGACCATCAATGTAAAGCACAGAAAGAGTGGACCAGCGGACTCT
GGAGCCAAGGTCCATCTTGCACTTGATAAAGAAGATACTTTGGACTGCAAAGTAGAAGGCAAAG
GTTTGCTTTGCTGAAATGCTCCTGCATGGGGTCACAGCACTGGGCATGAGGACTTGGTAGGAAC
CAAGAGGACTACGTAACTTCCAGTGTCCTGGTCTACGGATGCTGCATTCTGTCAGCTCTACAGG
GGATCCGACCAGTATCGTTGACAGCAACAGTAAGCCCTGGCCTGACCAGGCCTTCCCCTGGAAC
GACTTTTTGACCTCATGGACTCCCTCAGAGGCTGCTGGGTCAGACTCTCTGGTTTCTGTGACTA
GCTCAGAGCATCTCTGAAATGTAACCCTTCTGCCCACGGGAAAGCAGTCCTTACTGTGTTAATG
TTCTTTTCCTGTTAACAAGTACCTGAGACGATCCGTTTATAAAGATAAATGGTTTGTTTGGGCT
CACGGTTTTGGAGATTGCAGTATATACTAGTTTGGGGCCTGTGTTGGAGAGCAAGTAGCCACTC
ATAATGGAAACTCGAAAGGGGGAGAGGATGGGCTGGAGAGATGCTTCAGCAGTTAAGGGGCAGT
GACTGATCTCCTGGAAGACCCAAGTTTGATTCTCAGCACTCACATAGGAGCTCACAATTGATAA
TTCCAATGCCAGGAGATCCAATGCTCTCTTCTGGCCTCTGAGTACTGCAGACAGGTGGTGCAAA
CATATATGCAGGTAAAACACCCATATAAATAATTCTTCATTATAAAGGGAAAGGAAGAAAAAAA
AGAAAGAAGCAGAGGTGGGAAAGAGAGCATGCACATAAGATTCCCCAATACCCTTCAAGGTCAT
GTTCCCAACATCCTAAATCCTCCAACTAGATCCCATTTCCTAAAGGTTCAATTACCTCCTTAAT
GGCATCAGTAGGCTGAGGACCAAAACTTTAACCCTGTAACAGTCAAGATCCAAACAATAGTACA
TACTAACCACCTAGTTGATGAAAAAGCTGTAGGAGGGAAATATCCAGTTAAAATTCTATGATTC
CATTTGCCAATTATGAGATGGTTGGGGGTGGGGTGCAAACCTTTGAATTATATAGTGTAATGCA
TGCTGTGTGTTTCTTGACAATGTGGAGGCCTCTAATGAAGTACATTTACCAATGTCATTAAATT
TGTGTTTCCAGGAACCATGGGTGATACATGCTGTTTAAAAGAATAAAATTTTATGCTGATGTGA
TTTA

hide sequence

RefSeq Acc Id:

XM_039105381 ⟹ XP_038961309

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105382 ⟹ XP_038961310

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,103 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105383 ⟹ XP_038961311

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,104 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105384 ⟹ XP_038961312

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105385 ⟹ XP_038961313

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105386 ⟹ XP_038961314

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,101 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105387 ⟹ XP_038961315

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105388 ⟹ XP_038961316

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,105 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105389 ⟹ XP_038961317

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,104 - 34,360,770 (+)	NCBI

RefSeq Acc Id:

XM_039105390 ⟹ XP_038961318

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	34,199,103 - 34,360,770 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128052	(Get FASTA)	NCBI Sequence Viewer
	XP_017447375	(Get FASTA)	NCBI Sequence Viewer
	XP_038961309	(Get FASTA)	NCBI Sequence Viewer
	XP_038961310	(Get FASTA)	NCBI Sequence Viewer
	XP_038961311	(Get FASTA)	NCBI Sequence Viewer
	XP_038961312	(Get FASTA)	NCBI Sequence Viewer
	XP_038961313	(Get FASTA)	NCBI Sequence Viewer
	XP_038961314	(Get FASTA)	NCBI Sequence Viewer
	XP_038961315	(Get FASTA)	NCBI Sequence Viewer
	XP_038961316	(Get FASTA)	NCBI Sequence Viewer
	XP_038961317	(Get FASTA)	NCBI Sequence Viewer
	XP_038961318	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00462	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001128052 ⟸ NM_001134580

- UniProtKB:

D3ZUF1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MECFSPRMPGNCCPTWSSFQRHTTLTCPVKEFRMLLLCHILAVTILQILVISENWVFAKNINFY
NVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQETQYCLTVHHFTSHGRSTSITKKC
ASKNECHFVGCRHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTSGSSVSNVPRSY
LPVLAWLFMLPLL

hide sequence

RefSeq Acc Id:	XP_008759985 ⟸ XM_008761763
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_008759991 ⟸ XM_008761769
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_008759990 ⟸ XM_008761768
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447375 ⟸ XM_017591886
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447380 ⟸ XM_017591891
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447374 ⟸ XM_017591885
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447377 ⟸ XM_017591888
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447379 ⟸ XM_017591890
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447376 ⟸ XM_017591887
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:	XP_017447378 ⟸ XM_017591889
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPNSFKCFTCENAGDNYNCNRWA EDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECHFVGCRHSRDSEHTECRSCCEGMICNV ELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYLPVLAWLFMLPLL hide sequence

RefSeq Acc Id:

ENSRNOP00000063299 ⟸ ENSRNOT00000065989

RefSeq Acc Id:	XP_038961314 ⟸ XM_039105386
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961310 ⟸ XM_039105382
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961318 ⟸ XM_039105390
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961311 ⟸ XM_039105383
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961317 ⟸ XM_039105389
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961309 ⟸ XM_039105381
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961313 ⟸ XM_039105385
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961316 ⟸ XM_039105388
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961312 ⟸ XM_039105384
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961315 ⟸ XM_039105387
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692070

Promoter ID:

EPDNEW_R2595

Type:

single initiation site

Name:

Lypd6b_1

Description:

LY6/PLAUR domain containing 6B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	35,271,834 - 35,271,894	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562767	AgrOrtholog
Ensembl Genes	ENSRNOG00000004614	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000063299	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065989	ENTREZGENE, UniProtKB/TrEMBL
InterPro	LYPD6-like	UniProtKB/TrEMBL
KEGG Report	rno:362133	UniProtKB/TrEMBL
NCBI Gene	362133	ENTREZGENE
PANTHER	PTHR31171	UniProtKB/TrEMBL
PhenoGen	Lypd6b	PhenoGen
UniProt	D3ZUF1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Lypd6b	LY6/PLAUR domain containing 6B	RGD1562767	similar to RIKEN cDNA 2310010M24	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562767	similar to RIKEN cDNA 2310010M24	RGD1562767_predicted	similar to RIKEN cDNA 2310010M24 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562767_predicted	similar to RIKEN cDNA 2310010M24 (predicted)	LOC362133	similar to RIKEN cDNA 2310010M24	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362133	similar to RIKEN cDNA 2310010M24			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)