Cm13 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cm13 (Cardiac mass QTL 13) Rattus norvegicus

Symbol: Cm13
Name: Cardiac mass QTL 13
RGD ID: 1298073
Previously known as: Bp162; Blood pressure QTL 162
Trait: heart mass   (VT:0007028)    
Measurement Type: heart wet weight   (CMO:0000069)    
LOD Score: 2.5
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8345,423,609 - 58,601,291RGD_MAPPER_PIPELINE
mRatBN7.2325,013,911 - 38,192,233RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0325,633,366 - 39,248,391RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0330,841,048 - 44,344,790RGDRnor5.0
RGSC_v3.4321,201,203 - 35,237,920RGDRGSC3.4
RGSC_v3.1321,097,575 - 35,134,293RGD
Cross Type: Not Available
Strains Crossed: SR/Jr SS/Jr 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait
heart mass  (IDA)

Rat Strain
SR/Jr  (IEA)
SS/Jr  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Two blood pressure/cardiac mass quantitative trait loci on chromosome 3 in Dahl rats. Cicila GT, etal., Mamm Genome 1999 Feb;10(2):112-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1306160Lrp1bLDL receptor related protein 1B34500400147125147Rat
402271162LOC134486092uncharacterized LOC13448609234554499745545997Rat
41034676Actg1-ps7actin, gamma 1, pseudogene 734569295045708345Rat
402053030LOC134486091uncharacterized LOC13448609134656041346566667Rat
41092566LOC120101541uncharacterized LOC12010154134729992247315269Rat
41393928LOC120102048small nucleolar RNA SNORA1734730605647306186Rat
41260220LOC120101542MLV-related proviral Env polyprotein-like34773142247745894Rat
71061Kynukynureninase34818828648338996Rat
1359304Arhgap15Rho GTPase activating protein 1534838294549002213Rat
41176684LOC120102081small nucleolar RNA SNORA4034871584548715967Rat
41066404LOC120102110U2 spliceosomal RNA34896944948969586Rat
402320159LOC134486356uncharacterized LOC13448635634906994549121990Rat
402313696LOC134486357uncharacterized LOC13448635734914627949181251Rat
1563393Gtdc1glycosyltransferase-like domain containing 134917611049571594Rat
41007407Rnu2-18RNA, U2 small nuclear 1834922274549222884Rat
11498418LOC108350367uncharacterized LOC10835036734927971149291980Rat
1307272Zeb2zinc finger E-box binding homeobox 234962402849754323Rat
9273023Zeb2-as1ZEB2 antisense RNA 134975250249755379Rat
7498952LOC102548671uncharacterized LOC10254867134984397149894158Rat
9075793LOC103690391uncharacterized LOC10369039134998018949995956Rat
11373432LOC108350369uncharacterized LOC10835036935003568850085982Rat
41353600LOC120101545uncharacterized LOC12010154535015142550226627Rat
7622113LOC102548934uncharacterized LOC10254893435040359850407623Rat
402077208LOC134486358uncharacterized LOC13448635835060218150604066Rat
41041303LOC120102076small nucleolar RNA SNORA1735092974550929861Rat
2322483Traf7-ps2TNF receptor associated factor 7, pseudogene 235117814751179664Rat
41087157LOC120102072small nucleolar RNA SNORA1735122484751224947Rat
2323086Ddx18-ps2DEAD-box helicase 18, pseudogene 235161752851620898Rat
11429489LOC108350370uncharacterized LOC10835037035162598351638115Rat
9265290Elobl8elongin B like 835166460451665309Rat
41126518LOC120101546uncharacterized LOC12010154635175438151774399Rat
11383937LOC108350593uncharacterized LOC10835059335177450751783519Rat
41040480LOC120102009small nucleolar RNA SNORA435177588451775983Rat
41304536LOC120101992U7 small nuclear RNA35183894251839003Rat
41080470LOC120102080small nucleolar RNA SNORA4035193726051937385Rat
1590993Rpl37l4ribosomal protein L37 like 435250044752500755Rat
1334145Or6c247-ps1olfactory receptor family 6 subfamily C member 247, pseudogene 135251714552517592Rat
402101007LOC134486359uncharacterized LOC13448635935285089752871602Rat
1589738Max-ps1MYC associated factor X, pseudogene 135293025452930707Rat
7597606R3hdm2-ps1R3H domain containing 2, pseudogene 135309012253092867Rat
402367456LOC134486360uncharacterized LOC13448636035333625153358519Rat
11507559LOC108350372uncharacterized LOC10835037235333700553396206Rat
402055333LOC134486282uncharacterized LOC13448628235346411753465925Rat
70911Acvr2aactivin A receptor type 2A35361414353701933Rat
735212Orc4origin recognition complex, subunit 435370004653743293Rat
1562961Mbd5methyl-CpG binding domain protein 535374245854147970Rat
41358771LOC120101434uncharacterized LOC12010143435419361454196581Rat
1307271Epc2enhancer of polycomb homolog 235427618754376373Rat
1308539Kif5ckinesin family member 5C35444126654591630Rat
7502848LOC102556679uncharacterized LOC10255667935454560154546358Rat
1562767Lypd6bLy6/Plaur domain containing 6B35460832054769974Rat
1303202Ns5atp4-ps3NS5A transactivated protein 4, pseudogene 335487489254875679Rat
1587119Lypd6Ly6/Plaur domain containing 635489661855041928Rat
11444381Trnav-aac2transfer RNA valine (anticodon AAC) 235496907854969150Rat
41239310LOC120101547fatty acid-binding protein 5-like35499492654996284Rat
1587102Hnrnpa1-ps20heterogeneous nuclear ribonucleoprotein A1, pseudogene 2035508255555083837Rat
1303272Mmadhcmetabolism of cobalamin associated D35511783255135735Rat
7691310LOC102555425uncharacterized LOC10255542535513562355145464Rat
41020350Cep19-ps1centrosomal protein 19, pseudogene 135530728155308013Rat
402189712LOC134486093uncharacterized LOC13448609335551151455559597Rat
402171757LOC134486094uncharacterized LOC13448609435553097455545393Rat
402066124LOC134486283uncharacterized LOC13448628335581039455811104Rat
1359690Rnd3Rho family GTPase 335598114255998494Rat
402285385LOC134486361uncharacterized LOC13448636135600448056005976Rat
1359393Tas2r134taste receptor, type 2, member 13435648683656487825Rat
41177880LOC120101491ubiquitin-40S ribosomal protein S27a-like35666414256671032Rat
41102312Rpl29-ps11ribosomal protein L29, pseudogene 1135672436456724966Rat
41165151Rpl28-ps9ribosomal protein L28, pseudogene 935677613556776492Rat
1306676Rbm43RNA binding motif protein 4335680238456821371Rat
4109660Cct8-ps2chaperonin containing Tcp1, subunit 8 (theta), pseudogene 235681836756819383Rat
41340043Cct8-ps3chaperonin containing Tcp1, subunit 8 (theta), pseudogene 335681869756819779Rat
1311721NmiN-myc (and STAT) interactor35682477856848891Rat
1588377Ldha-ps11lactate dehydrogenase A, pseudogene 1135686948356870582Rat
621359Tnfaip6TNF alpha induced protein 635691139856930797Rat
1562474Rif1replication timing regulatory factor 135696384057017106Rat
1311134Nebnebulin35702282257220752Rat
41372376Trnaa-agc59transfer RNA alanine (anticodon AGC) 5935705727957057351Rat
40942202LOC120101548uncharacterized LOC12010154835722491457240131Rat
1563584Myl6-ps6myosin light chain 6, pseudogene 635724052357241131Rat
41374742Cdk4-ps3cyclin-dependent kinase 4, pseudogene 335724782157248523Rat
621327Arl5aARF like GTPase 5A35728759957312488Rat
68385Cacnb4calcium voltage-gated channel auxiliary subunit beta 435731590057578271Rat
41067155LOC120102058small nucleolar RNA SNORA1735740341457403540Rat
1311497Stam2signal transducing adaptor molecule 235759755757643915Rat
40956857Trnas-aga35transfer RNA serine (anticodon AGA) 3535766469157664765Rat
40998676Ndufa2-ps1NADH:ubiquinone oxidoreductase subunit A2, pseudogene 135767086757671169Rat
1564306Dppa5al1developmental pluripotency associated 5A like 135772504057725781Rat
1560248Fmnl2formin-like 235775823658033832Rat
402196189LOC134486095uncharacterized LOC13448609535783591257849799Rat
402026692LOC134486096uncharacterized LOC13448609635795715657970925Rat
1311401Prpf40apre-mRNA processing factor 40 homolog A35803677958098996Rat
1564819Arl6ip6ARF like GTPase 6 interacting protein 635809897858126962Rat
40961022Ndufb1-ps2NADH:ubiquinone oxidoreductase subunit B1, pseudogene 235815384058154064Rat
40992840LOC120101962U6 spliceosomal RNA35817752058177624Rat
9428172Rps27a-ps7ribosomal protein S27a, pseudogene 735821180358212357Rat
9854659Rps27a-ps31ribosomal protein S27a, pseudogene 3135822305558223775Rat
2320490Micos10-ps2mitochondrial contact site and cristae organizing system subunit 10, pseudogene 235830591158306142Rat
1592097Hnrnpa1-ps7heterogeneous nuclear ribonucleoprotein A1, pseudogene 735842745558434828Rat
41117082LOC120102079small nucleolar RNA SNORA4035856299458563114Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33862D3Mit924535076614550766390Ratregion
37510D3Rat10022535860129158601516Ratregion
37010D3Rat4915734790417247904329Ratregion
34927D3Rat19017935279495852795137Ratregion
35745D3Rat4812034987265749872777Ratregion
38148D3Rat8218835364004753640235Ratregion
38552D3Rat8021135593764255937853Ratregion
38646D3Rat11719334942694749427140Ratregion
43630D3Got2420835571495155715159Ratregion
60801D3Wox310435158166551581769Ratregion
60390D3Got2213635451471954514855Ratregion
66449D3Mco1626134542334845423609Ratregion
728035D3Chm4924435221050152210745Ratregion
1641120D3Got20515635396083653960992Ratregion
5079778RH14119718134974674349746924Ratregion
5066770AU04816112934780421747804346Ratregion
5066846AU04811618335847517658475359Ratregion
Position Markers

Flank 1: (D3Rat100)
Rat AssemblyChrPosition (strand)Source
GRCr8358,601,291 - 58,601,516 (+)Marker Load Pipeline
mRatBN7.2338,192,233 - 38,192,458 (+)MAPPER
Rnor_6.0339,248,391 - 39,248,617NCBI
Rnor_5.0344,344,790 - 44,345,016UniSTS
RGSC_v3.4335,237,921 - 35,238,147UniSTS
RGSC_v3.4335,237,920 - 35,238,147RGD
RGSC_v3.1335,134,293 - 35,134,519RGD
Celera336,329,420 - 36,329,646UniSTS
RH 3.4 Map3459.7RGD
RH 3.4 Map3459.7UniSTS
RH 2.0 Map3212.9RGD
SHRSP x BN Map320.0198RGD
FHH x ACI Map327.9799RGD
Peak: (D3Wox3)
Rat AssemblyChrPosition (strand)Source
GRCr8351,581,665 - 51,581,769 (+)Marker Load Pipeline
mRatBN7.2331,172,320 - 31,172,424 (+)MAPPER
Rnor_6.0330,846,101 - 30,846,204NCBI
Rnor_5.0336,017,179 - 36,017,282UniSTS
RGSC_v3.4327,506,718 - 27,506,822RGD
RGSC_v3.4327,506,719 - 27,506,822UniSTS
RGSC_v3.1327,403,090 - 27,403,194RGD
Celera329,450,070 - 29,450,173UniSTS
RH 3.4 Map3375.1RGD
RH 3.4 Map3375.1UniSTS
Cytogenetic Map3 RGD
Flank 2: (D3Mco16)
Rat AssemblyChrPosition (strand)Source
GRCr8345,423,348 - 45,423,609 (+)Marker Load Pipeline
mRatBN7.2325,013,650 - 25,013,911 (+)MAPPER
Rnor_6.0325,633,106 - 25,633,366NCBI
Rnor_5.0330,840,788 - 30,841,048UniSTS
RGSC_v3.4321,200,942 - 21,201,203RGD
RGSC_v3.4321,200,943 - 21,201,203UniSTS
RGSC_v3.1321,097,314 - 21,097,575RGD
Celera323,396,620 - 23,396,880UniSTS
Cytogenetic Map3q12UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)34542360958601291Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)34790417270710963Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)34790417270710963Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)35860129171157804Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3612543751125437Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)34790417270710963Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cm13


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Cm13  Cardiac mass QTL 13  Bp162  Blood pressure QTL 162  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference