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Gene: Prpf40a (pre-mRNA processing factor 40 homolog A) Rattus norvegicus
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Symbol: Prpf40a
Name: pre-mRNA processing factor 40 homolog A
Description: Predicted to have RNA binding activity and proline-rich region binding activity. Predicted to be involved in several processes, including cytoskeleton organization; mRNA splicing, via spliceosome; and regulation of cell shape. Predicted to localize to the cytosol and nucleus. Orthologous to human PRPF40A (pre-mRNA processing factor 40 homolog A); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Fnbp3; formin binding protein 3; LOC295607; pre-mRNA processing factor 40 homolog A (yeast); pre-mRNA-processing factor 40 homolog A; PRP40 pre-mRNA processing factor 40 homolog A; PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Orthologs:
Homo sapiens (human) : PRPF40A (pre-mRNA processing factor 40 homolog A)  HGNC  Alliance
Mus musculus (house mouse) : Prpf40a (pre-mRNA processing factor 40A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prpf40a (pre-mRNA processing factor 40 homolog A)
Pan paniscus (bonobo/pygmy chimpanzee) : PRPF40A (pre-mRNA processing factor 40 homolog A)
Canis lupus familiaris (dog) : PRPF40A (pre-mRNA processing factor 40 homolog A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prpf40a (pre-mRNA processing factor 40 homolog A)
Sus scrofa (pig) : PRPF40A (pre-mRNA processing factor 40 homolog A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0338,680,583 - 38,741,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0343,778,141 - 43,839,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4334,661,461 - 34,721,438 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1334,557,496 - 34,618,041 (-)NCBI
Celera335,768,130 - 35,827,799 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Prpf40a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311401
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.