Neb (nebulin) - Rat Genome Database

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Gene: Neb (nebulin) Rattus norvegicus
Analyze
Symbol: Neb
Name: nebulin
RGD ID: 1311134
Description: Predicted to enable actin filament binding activity. Predicted to be involved in cardiac muscle thin filament assembly. Located in myofibril. Human ortholog(s) of this gene implicated in nemaline myopathy 2. Orthologous to human NEB (nebulin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC311029
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2336,613,677 - 36,811,618 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl336,613,716 - 36,811,574 (-)Ensembl
Rnor_6.0337,658,081 - 37,855,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,658,563 - 37,854,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0342,756,006 - 42,955,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,634,963 - 33,833,113 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1333,531,401 - 33,730,104 (-)NCBI
Celera334,757,516 - 34,953,818 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
butanal  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
chrysene  (ISO)
cocaine  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
cypermethrin  (EXP)
dextran sulfate  (ISO)
dichloroacetic acid  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
Heliotrine  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
methylarsonic acid  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
N-nitrosodiethylamine  (ISO)
nitrofen  (EXP)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
phenobarbital  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
spermine  (ISO)
sunitinib  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9501083   PMID:16157704   PMID:16480876   PMID:17053899   PMID:18272787   PMID:19056867   PMID:20368620   PMID:26325472  


Genomics

Comparative Map Data
Neb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2336,613,677 - 36,811,618 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl336,613,716 - 36,811,574 (-)Ensembl
Rnor_6.0337,658,081 - 37,855,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl337,658,563 - 37,854,561 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0342,756,006 - 42,955,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4333,634,963 - 33,833,113 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1333,531,401 - 33,730,104 (-)NCBI
Celera334,757,516 - 34,953,818 (-)NCBICelera
Cytogenetic Map3q12NCBI
NEB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382151,485,339 - 151,734,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2151,485,336 - 151,734,487 (-)EnsemblGRCh38hg38GRCh38
GRCh372152,341,853 - 152,590,990 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362152,050,099 - 152,299,235 (-)NCBINCBI36hg18NCBI36
Build 342152,167,362 - 152,416,454NCBI
Celera2145,956,131 - 146,206,052 (-)NCBI
Cytogenetic Map2q23.3NCBI
HuRef2144,238,157 - 144,477,212 (-)NCBIHuRef
CHM1_12152,347,743 - 152,596,882 (-)NCBICHM1_1
T2T-CHM13v2.02151,937,128 - 152,186,240 (-)NCBI
Neb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39252,026,652 - 52,228,810 (-)NCBIGRCm39mm39
GRCm39 Ensembl252,026,659 - 52,268,486 (-)Ensembl
GRCm38252,136,640 - 52,338,798 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,136,647 - 52,378,474 (-)EnsemblGRCm38mm10GRCm38
MGSCv37251,992,167 - 52,194,318 (-)NCBIGRCm37mm9NCBIm37
MGSCv36251,958,442 - 52,160,807 (-)NCBImm8
Celera253,863,762 - 54,067,950 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map229.98NCBI
Neb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544017,060,498 - 17,259,558 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544017,060,303 - 17,259,558 (-)NCBIChiLan1.0ChiLan1.0
NEB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B156,060,919 - 156,275,265 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02B38,796,991 - 39,038,824 (-)NCBIMhudiblu_PPA_v0panPan3
LOC476149
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11952,720,427 - 52,921,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,569,894 - 52,919,792 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2628,742,557 - 28,907,260 (+)NCBI
Neb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,577,449 - 115,780,143 (-)NCBI
SpeTri2.0NW_00493646925,837,577 - 26,040,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15546,233 - 766,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115546,187 - 766,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215156,931,032 - 157,035,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,917,675 - 37,142,582 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040162,404,217 - 162,627,623 (+)NCBIVero_WHO_p1.0
Neb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248665,393,721 - 5,609,635 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248665,395,080 - 5,610,128 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH143235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2336,626,891 - 36,627,013 (+)MAPPERmRatBN7.2
Rnor_6.0337,671,295 - 37,671,416NCBIRnor6.0
Rnor_5.0342,769,220 - 42,769,341UniSTSRnor5.0
RGSC_v3.4333,647,642 - 33,647,763UniSTSRGSC3.4
Celera334,770,728 - 34,770,849UniSTS
RH 3.4 Map3442.2UniSTS
Cytogenetic Map3q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)32501391138192233Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)32749462150302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:56
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000059461
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8 8 8
Medium 3 9
Low 22 26 10 18 10 33 26 28 2
Below cutoff 3 21 2 2 1 2 35 9 13

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006224416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059461   ⟹   ENSRNOP00000056216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
Rnor_6.0 Ensembl337,658,694 - 37,803,112 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076095   ⟹   ENSRNOP00000068343
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
Rnor_6.0 Ensembl337,658,563 - 37,854,561 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094669   ⟹   ENSRNOP00000084245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,613,716 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100063   ⟹   ENSRNOP00000080810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101520   ⟹   ENSRNOP00000081170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103661   ⟹   ENSRNOP00000088131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103859   ⟹   ENSRNOP00000076693
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105611   ⟹   ENSRNOP00000080912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113261   ⟹   ENSRNOP00000097548
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119055   ⟹   ENSRNOP00000077426
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl336,614,000 - 36,811,574 (-)Ensembl
RefSeq Acc Id: XM_039106258   ⟹   XP_038962186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106259   ⟹   XP_038962187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106260   ⟹   XP_038962188
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106261   ⟹   XP_038962189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106262   ⟹   XP_038962190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106263   ⟹   XP_038962191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106264   ⟹   XP_038962192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106265   ⟹   XP_038962193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106266   ⟹   XP_038962194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106267   ⟹   XP_038962195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106268   ⟹   XP_038962196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106269   ⟹   XP_038962197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106270   ⟹   XP_038962198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106271   ⟹   XP_038962199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106272   ⟹   XP_038962200
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106273   ⟹   XP_038962201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106274   ⟹   XP_038962202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106276   ⟹   XP_038962204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106277   ⟹   XP_038962205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106278   ⟹   XP_038962206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106279   ⟹   XP_038962207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106280   ⟹   XP_038962208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106281   ⟹   XP_038962209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106282   ⟹   XP_038962210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106283   ⟹   XP_038962211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106284   ⟹   XP_038962212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106285   ⟹   XP_038962213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106286   ⟹   XP_038962214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106287   ⟹   XP_038962215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106288   ⟹   XP_038962216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106289   ⟹   XP_038962217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106290   ⟹   XP_038962218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106291   ⟹   XP_038962219
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106292   ⟹   XP_038962220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106293   ⟹   XP_038962221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106294   ⟹   XP_038962222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106295   ⟹   XP_038962223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106296   ⟹   XP_038962224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106297   ⟹   XP_038962225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,618 (-)NCBI
RefSeq Acc Id: XM_039106298   ⟹   XP_038962226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106299   ⟹   XP_038962227
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106300   ⟹   XP_038962228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106302   ⟹   XP_038962230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
RefSeq Acc Id: XM_039106303   ⟹   XP_038962231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2336,613,677 - 36,811,617 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038962186 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962196 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962200 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962214 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962217 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962221 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962222 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962223 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962224 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962225 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962226 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962227 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962228 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962230 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962231 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM00439 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: ENSRNOP00000056216   ⟸   ENSRNOT00000059461
RefSeq Acc Id: ENSRNOP00000068343   ⟸   ENSRNOT00000076095
RefSeq Acc Id: XP_038962225   ⟸   XM_039106297
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038962201   ⟸   XM_039106273
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038962195   ⟸   XM_039106267
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038962196   ⟸   XM_039106268
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038962194   ⟸   XM_039106266
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038962191   ⟸   XM_039106263
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038962190   ⟸   XM_039106262
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962188   ⟸   XM_039106260
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962189   ⟸   XM_039106261
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962207   ⟸   XM_039106279
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038962200   ⟸   XM_039106272
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038962192   ⟸   XM_039106264
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038962199   ⟸   XM_039106271
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038962193   ⟸   XM_039106265
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038962186   ⟸   XM_039106258
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962187   ⟸   XM_039106259
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962231   ⟸   XM_039106303
- Peptide Label: isoform X44
RefSeq Acc Id: XP_038962228   ⟸   XM_039106300
- Peptide Label: isoform X42
RefSeq Acc Id: XP_038962222   ⟸   XM_039106294
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038962230   ⟸   XM_039106302
- Peptide Label: isoform X43
RefSeq Acc Id: XP_038962223   ⟸   XM_039106295
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038962218   ⟸   XM_039106290
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038962215   ⟸   XM_039106287
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038962226   ⟸   XM_039106298
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038962217   ⟸   XM_039106289
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038962227   ⟸   XM_039106299
- Peptide Label: isoform X41
RefSeq Acc Id: XP_038962219   ⟸   XM_039106291
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038962213   ⟸   XM_039106285
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038962211   ⟸   XM_039106283
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038962205   ⟸   XM_039106277
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038962224   ⟸   XM_039106296
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038962214   ⟸   XM_039106286
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038962216   ⟸   XM_039106288
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038962208   ⟸   XM_039106280
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038962204   ⟸   XM_039106276
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038962220   ⟸   XM_039106292
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038962210   ⟸   XM_039106282
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038962221   ⟸   XM_039106293
- Peptide Label: isoform X35
RefSeq Acc Id: XP_038962212   ⟸   XM_039106284
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038962202   ⟸   XM_039106274
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038962197   ⟸   XM_039106269
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038962206   ⟸   XM_039106278
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038962198   ⟸   XM_039106270
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038962209   ⟸   XM_039106281
- Peptide Label: isoform X23
RefSeq Acc Id: ENSRNOP00000084245   ⟸   ENSRNOT00000094669
RefSeq Acc Id: ENSRNOP00000080912   ⟸   ENSRNOT00000105611
RefSeq Acc Id: ENSRNOP00000088131   ⟸   ENSRNOT00000103661
RefSeq Acc Id: ENSRNOP00000097548   ⟸   ENSRNOT00000113261
RefSeq Acc Id: ENSRNOP00000076693   ⟸   ENSRNOT00000103859
RefSeq Acc Id: ENSRNOP00000077426   ⟸   ENSRNOT00000119055
RefSeq Acc Id: ENSRNOP00000081170   ⟸   ENSRNOT00000101520
RefSeq Acc Id: ENSRNOP00000080810   ⟸   ENSRNOT00000100063
Protein Domains
SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311134 AgrOrtholog
BioCyc Gene G2FUF-49734 BioCyc
Ensembl Genes ENSRNOG00000006783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056216 UniProtKB/TrEMBL
  ENSRNOP00000068343 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000076693 ENTREZGENE
  ENSRNOP00000077426 ENTREZGENE
  ENSRNOP00000080912 ENTREZGENE
  ENSRNOP00000081170 ENTREZGENE
  ENSRNOP00000088131 ENTREZGENE
Ensembl Transcript ENSRNOT00000059461 UniProtKB/TrEMBL
  ENSRNOT00000076095 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000101520 ENTREZGENE
  ENSRNOT00000103661 ENTREZGENE
  ENSRNOT00000103859 ENTREZGENE
  ENSRNOT00000105611 ENTREZGENE
  ENSRNOT00000119055 ENTREZGENE
InterPro Nebulin UniProtKB/TrEMBL
  Nebulin_35r-motif UniProtKB/TrEMBL
  Nebulin_SH3 UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene 311029 ENTREZGENE
Pfam Nebulin; 116 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Neb PhenoGen
PRINTS NEBULIN UniProtKB/TrEMBL
PROSITE NEBULIN; 203 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART NEBU; 200 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SH3 UniProtKB/TrEMBL
UniProt A0A096MK15_RAT UniProtKB/TrEMBL
  F1M1J2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Neb  nebulin   Neb_predicted  nebulin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Neb_predicted  nebulin (predicted)      Symbol and Name status set to approved 70820 APPROVED