Neb (nebulin) - Rat Genome Database

Name: Neb
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Neb (nebulin) Rattus norvegicus

Analyze

Symbol:

Neb

Name:

nebulin

RGD ID:

1311134

Description:

Predicted to enable actin filament binding activity. Predicted to be involved in cardiac muscle thin filament assembly. Located in myofibril. Human ortholog(s) of this gene implicated in nemaline myopathy 2. Orthologous to human NEB (nebulin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC311029

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NEB (nebulin)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Neb (nebulin)	HGNC	NCBI, HomoloGene, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Neb (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NEB (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC476149 (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Neb (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NEB (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NEB (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Neb (nebulin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NEB (nebulin)	Alliance	DIOPT (HGNC)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	36,613,716 - 36,811,574 (-)	Ensembl
Rnor_6.0	3	37,658,081 - 37,855,843 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,658,563 - 37,854,561 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	42,756,006 - 42,955,175 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	33,634,963 - 33,833,113 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	33,531,401 - 33,730,104 (-)	NCBI
Celera	3	34,757,516 - 34,953,818 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Actin-Accumulation Myopathy (ISO)

Arthrogryposis Multiplex Congenita 6 (ISO)

congenital muscular dystrophy (ISO)

Deglutition Disorders (ISO)

genetic disease (ISO)

Hydrops Fetalis (ISO)

idiopathic generalized epilepsy (ISO)

muscular dystrophy (ISO)

nemaline myopathy (ISO)

nemaline myopathy 2 (ISO)

neuropathy (ISO)

peripheral nervous system disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

Benzo[ghi]perylene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

carbon nanotube (ISO)

choline (ISO)

chrysene (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

cypermethrin (EXP)

dextran sulfate (ISO)

dichloroacetic acid (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

folic acid (ISO)

gentamycin (EXP)

Heliotrine (ISO)

isoprenaline (ISO)

L-methionine (ISO)

methylarsonic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monosodium L-glutamate (ISO)

N-acetyl-1,4-benzoquinone imine (ISO)

N-nitrosodiethylamine (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

propanal (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

senecionine (ISO)

Senkirkine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

spermine (ISO)

sunitinib (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cardiac muscle thin filament assembly (IBA)

Cellular Component

contractile fiber (ISO)

myofibril (IDA)

protein-containing complex (ISO)

Z disc (IBA,ISO)

Molecular Function

actin filament binding (IBA)

protein binding (ISO)

References

References - curated


1.	Chen SP, etal., Anal Biochem. 2005 Mar 15;338(2):270-7.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA data from the GO Consortium
4.	MGD data from the GO Consortium
5.	OMIM Disease Annotation Pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9501083	PMID:16157704	PMID:16480876	PMID:17053899	PMID:18272787	PMID:19056867	PMID:20368620	PMID:26325472

Genomics

Comparative Map Data

Neb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	36,613,716 - 36,811,574 (-)	Ensembl
Rnor_6.0	3	37,658,081 - 37,855,843 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,658,563 - 37,854,561 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	42,756,006 - 42,955,175 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	33,634,963 - 33,833,113 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	33,531,401 - 33,730,104 (-)	NCBI
Celera	3	34,757,516 - 34,953,818 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

NEB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	151,485,339 - 151,734,476 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	151,485,336 - 151,734,487 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	152,341,853 - 152,590,990 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	152,050,099 - 152,299,235 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	152,167,362 - 152,416,454	NCBI
Celera	2	145,956,131 - 146,206,052 (-)	NCBI
Cytogenetic Map	2	q23.3	NCBI
HuRef	2	144,238,157 - 144,477,212 (-)	NCBI		HuRef
CHM1_1	2	152,347,743 - 152,596,882 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	151,937,128 - 152,186,240 (-)	NCBI

Neb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	52,026,652 - 52,228,810 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	52,026,659 - 52,268,486 (-)	Ensembl
GRCm38	2	52,136,640 - 52,338,798 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	52,136,647 - 52,378,474 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	51,992,167 - 52,194,318 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	51,958,442 - 52,160,807 (-)	NCBI			mm8
Celera	2	53,863,762 - 54,067,950 (-)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	29.98	NCBI

Neb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	17,060,498 - 17,259,558 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	17,060,303 - 17,259,558 (-)	NCBI	ChiLan1.0	ChiLan1.0

NEB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	156,060,919 - 156,275,265 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	2B	38,796,991 - 39,038,824 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

LOC476149
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	52,720,427 - 52,921,064 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	52,569,894 - 52,919,792 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	28,742,557 - 28,907,260 (+)	NCBI

Neb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	115,577,449 - 115,780,143 (-)	NCBI
SpeTri2.0	NW_004936469	25,837,577 - 26,040,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NEB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	546,233 - 766,131 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	546,187 - 766,131 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	156,931,032 - 157,035,322 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NEB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	36,917,675 - 37,142,582 (-)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666040	162,404,217 - 162,627,623 (+)	NCBI	Vero_WHO_p1.0

Neb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624866	5,393,721 - 5,609,635 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624866	5,395,080 - 5,610,128 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH143235

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	36,626,891 - 36,627,013 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	37,671,295 - 37,671,416	NCBI	Rnor6.0
Rnor_5.0	3	42,769,220 - 42,769,341	UniSTS	Rnor5.0
RGSC_v3.4	3	33,647,642 - 33,647,763	UniSTS	RGSC3.4
Celera	3	34,770,728 - 34,770,849	UniSTS
RH 3.4 Map	3	442.2	UniSTS
Cytogenetic Map	3	q12	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	25013911	38192233	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	27494621	44188411	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	27494621	50302886	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	3	27494621	50302886	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	27494621	50302886	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	74
Count of miRNA genes:	56
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000059461
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High							8	8					8
Medium								3				9
Low		22	26	10	18	10			33	26	28	2
Below cutoff	3	21	2	2	1	2			35	9	13

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006224416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000059461 ⟹ ENSRNOP00000056216

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl
Rnor_6.0 Ensembl	3	37,658,694 - 37,803,112 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076095 ⟹ ENSRNOP00000068343

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl
Rnor_6.0 Ensembl	3	37,658,563 - 37,854,561 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094669 ⟹ ENSRNOP00000084245

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,613,716 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100063 ⟹ ENSRNOP00000080810

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101520 ⟹ ENSRNOP00000081170

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103661 ⟹ ENSRNOP00000088131

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103859 ⟹ ENSRNOP00000076693

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105611 ⟹ ENSRNOP00000080912

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113261 ⟹ ENSRNOP00000097548

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119055 ⟹ ENSRNOP00000077426

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	36,614,000 - 36,811,574 (-)	Ensembl

RefSeq Acc Id:

XM_039106258 ⟹ XP_038962186

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106259 ⟹ XP_038962187

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106260 ⟹ XP_038962188

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106261 ⟹ XP_038962189

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106262 ⟹ XP_038962190

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106263 ⟹ XP_038962191

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106264 ⟹ XP_038962192

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106265 ⟹ XP_038962193

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106266 ⟹ XP_038962194

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106267 ⟹ XP_038962195

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106268 ⟹ XP_038962196

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106269 ⟹ XP_038962197

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106270 ⟹ XP_038962198

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106271 ⟹ XP_038962199

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106272 ⟹ XP_038962200

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106273 ⟹ XP_038962201

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106274 ⟹ XP_038962202

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106276 ⟹ XP_038962204

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106277 ⟹ XP_038962205

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106278 ⟹ XP_038962206

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106279 ⟹ XP_038962207

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106280 ⟹ XP_038962208

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106281 ⟹ XP_038962209

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106282 ⟹ XP_038962210

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106283 ⟹ XP_038962211

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106284 ⟹ XP_038962212

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106285 ⟹ XP_038962213

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106286 ⟹ XP_038962214

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106287 ⟹ XP_038962215

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106288 ⟹ XP_038962216

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106289 ⟹ XP_038962217

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106290 ⟹ XP_038962218

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106291 ⟹ XP_038962219

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106292 ⟹ XP_038962220

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106293 ⟹ XP_038962221

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106294 ⟹ XP_038962222

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106295 ⟹ XP_038962223

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106296 ⟹ XP_038962224

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106297 ⟹ XP_038962225

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,618 (-)	NCBI

RefSeq Acc Id:

XM_039106298 ⟹ XP_038962226

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106299 ⟹ XP_038962227

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106300 ⟹ XP_038962228

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106302 ⟹ XP_038962230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

RefSeq Acc Id:

XM_039106303 ⟹ XP_038962231

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	36,613,677 - 36,811,617 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038962186	(Get FASTA)	NCBI Sequence Viewer
	XP_038962187	(Get FASTA)	NCBI Sequence Viewer
	XP_038962188	(Get FASTA)	NCBI Sequence Viewer
	XP_038962189	(Get FASTA)	NCBI Sequence Viewer
	XP_038962190	(Get FASTA)	NCBI Sequence Viewer
	XP_038962191	(Get FASTA)	NCBI Sequence Viewer
	XP_038962192	(Get FASTA)	NCBI Sequence Viewer
	XP_038962193	(Get FASTA)	NCBI Sequence Viewer
	XP_038962194	(Get FASTA)	NCBI Sequence Viewer
	XP_038962195	(Get FASTA)	NCBI Sequence Viewer
	XP_038962196	(Get FASTA)	NCBI Sequence Viewer
	XP_038962197	(Get FASTA)	NCBI Sequence Viewer
	XP_038962198	(Get FASTA)	NCBI Sequence Viewer
	XP_038962199	(Get FASTA)	NCBI Sequence Viewer
	XP_038962200	(Get FASTA)	NCBI Sequence Viewer
	XP_038962201	(Get FASTA)	NCBI Sequence Viewer
	XP_038962202	(Get FASTA)	NCBI Sequence Viewer
	XP_038962204	(Get FASTA)	NCBI Sequence Viewer
	XP_038962205	(Get FASTA)	NCBI Sequence Viewer
	XP_038962206	(Get FASTA)	NCBI Sequence Viewer
	XP_038962207	(Get FASTA)	NCBI Sequence Viewer
	XP_038962208	(Get FASTA)	NCBI Sequence Viewer
	XP_038962209	(Get FASTA)	NCBI Sequence Viewer
	XP_038962210	(Get FASTA)	NCBI Sequence Viewer
	XP_038962211	(Get FASTA)	NCBI Sequence Viewer
	XP_038962212	(Get FASTA)	NCBI Sequence Viewer
	XP_038962213	(Get FASTA)	NCBI Sequence Viewer
	XP_038962214	(Get FASTA)	NCBI Sequence Viewer
	XP_038962215	(Get FASTA)	NCBI Sequence Viewer
	XP_038962216	(Get FASTA)	NCBI Sequence Viewer
	XP_038962217	(Get FASTA)	NCBI Sequence Viewer
	XP_038962218	(Get FASTA)	NCBI Sequence Viewer
	XP_038962219	(Get FASTA)	NCBI Sequence Viewer
	XP_038962220	(Get FASTA)	NCBI Sequence Viewer
	XP_038962221	(Get FASTA)	NCBI Sequence Viewer
	XP_038962222	(Get FASTA)	NCBI Sequence Viewer
	XP_038962223	(Get FASTA)	NCBI Sequence Viewer
	XP_038962224	(Get FASTA)	NCBI Sequence Viewer
	XP_038962225	(Get FASTA)	NCBI Sequence Viewer
	XP_038962226	(Get FASTA)	NCBI Sequence Viewer
	XP_038962227	(Get FASTA)	NCBI Sequence Viewer
	XP_038962228	(Get FASTA)	NCBI Sequence Viewer
	XP_038962230	(Get FASTA)	NCBI Sequence Viewer
	XP_038962231	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00439	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

ENSRNOP00000056216 ⟸ ENSRNOT00000059461

RefSeq Acc Id:

ENSRNOP00000068343 ⟸ ENSRNOT00000076095

RefSeq Acc Id:	XP_038962225 ⟸ XM_039106297
- Peptide Label:	isoform X39

RefSeq Acc Id:	XP_038962201 ⟸ XM_039106273
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038962195 ⟸ XM_039106267
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038962196 ⟸ XM_039106268
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038962194 ⟸ XM_039106266
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038962191 ⟸ XM_039106263
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038962190 ⟸ XM_039106262
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038962188 ⟸ XM_039106260
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038962189 ⟸ XM_039106261
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038962207 ⟸ XM_039106279
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_038962200 ⟸ XM_039106272
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038962192 ⟸ XM_039106264
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038962199 ⟸ XM_039106271
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038962193 ⟸ XM_039106265
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038962186 ⟸ XM_039106258
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038962187 ⟸ XM_039106259
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038962231 ⟸ XM_039106303
- Peptide Label:	isoform X44

RefSeq Acc Id:	XP_038962228 ⟸ XM_039106300
- Peptide Label:	isoform X42

RefSeq Acc Id:	XP_038962222 ⟸ XM_039106294
- Peptide Label:	isoform X36

RefSeq Acc Id:	XP_038962230 ⟸ XM_039106302
- Peptide Label:	isoform X43

RefSeq Acc Id:	XP_038962223 ⟸ XM_039106295
- Peptide Label:	isoform X37

RefSeq Acc Id:	XP_038962218 ⟸ XM_039106290
- Peptide Label:	isoform X32

RefSeq Acc Id:	XP_038962215 ⟸ XM_039106287
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_038962226 ⟸ XM_039106298
- Peptide Label:	isoform X40

RefSeq Acc Id:	XP_038962217 ⟸ XM_039106289
- Peptide Label:	isoform X31

RefSeq Acc Id:	XP_038962227 ⟸ XM_039106299
- Peptide Label:	isoform X41

RefSeq Acc Id:	XP_038962219 ⟸ XM_039106291
- Peptide Label:	isoform X33

RefSeq Acc Id:	XP_038962213 ⟸ XM_039106285
- Peptide Label:	isoform X27

RefSeq Acc Id:	XP_038962211 ⟸ XM_039106283
- Peptide Label:	isoform X25

RefSeq Acc Id:	XP_038962205 ⟸ XM_039106277
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_038962224 ⟸ XM_039106296
- Peptide Label:	isoform X38

RefSeq Acc Id:	XP_038962214 ⟸ XM_039106286
- Peptide Label:	isoform X28

RefSeq Acc Id:	XP_038962216 ⟸ XM_039106288
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_038962208 ⟸ XM_039106280
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038962204 ⟸ XM_039106276
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_038962220 ⟸ XM_039106292
- Peptide Label:	isoform X34

RefSeq Acc Id:	XP_038962210 ⟸ XM_039106282
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_038962221 ⟸ XM_039106293
- Peptide Label:	isoform X35

RefSeq Acc Id:	XP_038962212 ⟸ XM_039106284
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_038962202 ⟸ XM_039106274
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038962197 ⟸ XM_039106269
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038962206 ⟸ XM_039106278
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_038962198 ⟸ XM_039106270
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038962209 ⟸ XM_039106281
- Peptide Label:	isoform X23

RefSeq Acc Id:

ENSRNOP00000084245 ⟸ ENSRNOT00000094669

RefSeq Acc Id:

ENSRNOP00000080912 ⟸ ENSRNOT00000105611

RefSeq Acc Id:

ENSRNOP00000088131 ⟸ ENSRNOT00000103661

RefSeq Acc Id:

ENSRNOP00000097548 ⟸ ENSRNOT00000113261

RefSeq Acc Id:

ENSRNOP00000076693 ⟸ ENSRNOT00000103859

RefSeq Acc Id:

ENSRNOP00000077426 ⟸ ENSRNOT00000119055

RefSeq Acc Id:

ENSRNOP00000081170 ⟸ ENSRNOT00000101520

RefSeq Acc Id:

ENSRNOP00000080810 ⟸ ENSRNOT00000100063

Protein Domains

SH3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311134	AgrOrtholog
BioCyc Gene	G2FUF-49734	BioCyc
Ensembl Genes	ENSRNOG00000006783	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000056216	UniProtKB/TrEMBL
	ENSRNOP00000068343	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000076693	ENTREZGENE
	ENSRNOP00000077426	ENTREZGENE
	ENSRNOP00000080912	ENTREZGENE
	ENSRNOP00000081170	ENTREZGENE
	ENSRNOP00000088131	ENTREZGENE
Ensembl Transcript	ENSRNOT00000059461	UniProtKB/TrEMBL
	ENSRNOT00000076095	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000101520	ENTREZGENE
	ENSRNOT00000103661	ENTREZGENE
	ENSRNOT00000103859	ENTREZGENE
	ENSRNOT00000105611	ENTREZGENE
	ENSRNOT00000119055	ENTREZGENE
InterPro	Nebulin	UniProtKB/TrEMBL
	Nebulin_35r-motif	UniProtKB/TrEMBL
	Nebulin_SH3	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
NCBI Gene	311029	ENTREZGENE
Pfam	Nebulin; 116	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
PhenoGen	Neb	PhenoGen
PRINTS	NEBULIN	UniProtKB/TrEMBL
PROSITE	NEBULIN; 203	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	NEBU; 200	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	SH3	UniProtKB/TrEMBL
UniProt	A0A096MK15_RAT	UniProtKB/TrEMBL
	F1M1J2_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Neb	nebulin	Neb_predicted	nebulin (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Neb_predicted	nebulin (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM