Or5al5-ps1 (olfactory receptor family 5 subfamily AL member 5, pseudogene 1) - Rat Genome Database

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Gene: Or5al5-ps1 (olfactory receptor family 5 subfamily AL member 5, pseudogene 1) Rattus norvegicus
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Symbol: Or5al5-ps1
Name: olfactory receptor family 5 subfamily AL member 5, pseudogene 1
RGD ID: 1332616
Description: olfactory receptor pseudogene
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: REVIEWED
Previously known as: AABR07052755.2; olfactory receptor pseudogene 478; Olr478-ps
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8391,526,124 - 91,527,082 (-)NCBIGRCr8
mRatBN7.2371,119,457 - 71,120,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl371,119,478 - 71,120,415 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx374,504,164 - 74,505,122 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0383,102,704 - 83,103,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0380,885,882 - 80,886,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0373,437,871 - 73,438,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl373,437,892 - 73,438,829 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0380,006,510 - 80,007,468 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4369,291,307 - 69,292,265 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1369,187,578 - 69,188,737 (-)NCBI
Celera370,449,784 - 70,450,742 (-)ENTREZGENECelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



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Reference Title
Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.


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Variants in Or5al5-ps1
1 total Variants

1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat

1 to 10 of 48 rows





RefSeq Transcripts NG_003720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl371,119,478 - 71,120,415 (-)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-49082 BioCyc
Ensembl Genes ENSRNOG00000032597 Ensembl
NCBI Gene 405460 ENTREZGENE
PhenoGen Or5al5-ps1 PhenoGen
RatGTEx ENSRNOG00000032597 RatGTEx


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or5al5-ps1  olfactory receptor family 5 subfamily AL member 5, pseudogene 1  Olr478-ps  olfactory receptor pseudogene 478  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr478-ps  olfactory receptor pseudogene 478  Olr478-ps  olfactory receptor pseudogene 478  Data merged from RGD:15003965 737654 PROVISIONAL
2022-01-06 Olr478-ps  olfactory receptor pseudogene 478  AABR07052755.2    Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 AABR07052755.2        Symbol and Name status set to provisional 45752 PROVISIONAL
2005-02-04 Olr478-ps  olfactory receptor pseudogene 478      Symbol and Name status set to approved 70820 APPROVED