Scn1a (sodium voltage-gated channel alpha subunit 1) - Rat Genome Database

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Gene: Scn1a (sodium voltage-gated channel alpha subunit 1) Rattus norvegicus
Analyze
Symbol: Scn1a
Name: sodium voltage-gated channel alpha subunit 1
RGD ID: 69364
Description: Exhibits sodium ion binding activity and voltage-gated sodium channel activity. Involved in neuronal action potential. Localizes to integral component of presynaptic membrane and voltage-gated sodium channel complex. Human ortholog(s) of this gene implicated in Dravet syndrome; familial hemiplegic migraine 3; generalized epilepsy with febrile seizures plus; and generalized epilepsy with febrile seizures plus 2. Orthologous to human SCN1A (sodium voltage-gated channel alpha subunit 1); INTERACTS WITH 1-bromopropane; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC102553713; sodium channel protein brain I subunit alpha; sodium channel protein type 1 subunit alpha; sodium channel protein type 1 subunit alpha-like; sodium channel protein type I subunit alpha; sodium channel protein, brain I subunit alpha; sodium channel voltage-gated type I alpha polypeptide; sodium channel, voltage-gated, type 1, alpha polypeptide; sodium channel, voltage-gated, type I, alpha; sodium channel, voltage-gated, type I, alpha polypeptide; sodium channel, voltage-gated, type I, alpha subunit; voltage-gated sodium channel subunit alpha Nav1.1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Scn1am1Kyo   Scn1am2Kyo  
Genetic Models: F344-Scn1am1Kyo F344-Scn1am2Kyo F344-Scn1am1Kyo.GRY-Cacna1agry/Okym
Is Marker For: Strains:   F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Scn1am1/Kyo  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2350,952,790 - 51,071,804 (-)NCBI
Rnor_6.0 Ensembl352,381,975 - 52,510,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0352,388,811 - 52,533,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0359,016,641 - 59,135,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,238,528 - 48,364,143 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1348,134,899 - 48,260,515 (-)NCBI
Celera350,540,798 - 50,655,298 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:1658739   PMID:10769382   PMID:10827969   PMID:12835125   PMID:15272007   PMID:15746173   PMID:15797713   PMID:15878599   PMID:16921370   PMID:16966585   PMID:17228331   PMID:17322896  
PMID:17537961   PMID:17709186   PMID:17884088   PMID:17928448   PMID:19426735   PMID:19765660   PMID:20483028   PMID:20707984   PMID:20875856   PMID:21714116   PMID:22871113   PMID:22920678  
PMID:22992729   PMID:23219908   PMID:23318929   PMID:23375560   PMID:26259688   PMID:26528804   PMID:26978272   PMID:27207958   PMID:27281198  


Genomics

Candidate Gene Status
Scn1a is a candidate Gene for QTL Alc19
Comparative Map Data
Scn1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2350,952,790 - 51,071,804 (-)NCBI
Rnor_6.0 Ensembl352,381,975 - 52,510,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0352,388,811 - 52,533,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0359,016,641 - 59,135,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,238,528 - 48,364,143 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1348,134,899 - 48,260,515 (-)NCBI
Celera350,540,798 - 50,655,298 (-)NCBICelera
Cytogenetic Map3q21NCBI
SCN1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2165,984,641 - 166,149,214 (-)EnsemblGRCh38hg38GRCh38
GRCh382165,984,641 - 166,149,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372166,841,151 - 167,005,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,553,916 - 166,638,395 (-)NCBINCBI36hg18NCBI36
Build 342166,673,232 - 166,755,638NCBI
Celera2160,455,660 - 160,540,161 (-)NCBI
Cytogenetic Map2q24.3NCBI
HuRef2158,727,062 - 158,886,965 (-)NCBIHuRef
CHM1_12166,851,977 - 167,011,835 (-)NCBICHM1_1
Scn1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39266,101,125 - 66,271,181 (-)NCBIGRCm39mm39
GRCm39 Ensembl266,101,122 - 66,271,184 (-)Ensembl
GRCm38266,270,781 - 66,440,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl266,270,778 - 66,440,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv37266,108,839 - 66,278,894 (-)NCBIGRCm37mm9NCBIm37
MGSCv36266,071,621 - 66,241,676 (-)NCBImm8
Celera267,950,131 - 68,119,920 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.13NCBI
Scn1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,160,986 - 8,221,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,072,910 - 8,220,763 (+)NCBIChiLan1.0ChiLan1.0
SCN1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B170,736,651 - 170,826,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,736,651 - 170,822,014 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B53,258,614 - 53,348,131 (-)NCBIMhudiblu_PPA_v0panPan3
SCN1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13611,105,936 - 11,245,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3611,108,050 - 11,183,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3611,250,750 - 11,390,861 (-)NCBI
ROS_Cfam_1.03611,240,396 - 11,380,203 (-)NCBI
UMICH_Zoey_3.13611,322,130 - 11,462,589 (-)NCBI
UNSW_CanFamBas_1.03611,294,554 - 11,434,591 (-)NCBI
UU_Cfam_GSD_1.03611,407,225 - 11,547,338 (-)NCBI
Scn1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303128,271,735 - 128,421,841 (-)NCBI
SpeTri2.0NW_00493646913,194,769 - 13,345,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCN1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,529,875 - 72,678,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,529,866 - 72,696,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21581,177,412 - 81,188,630 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCN1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11051,490,204 - 51,653,916 (-)NCBI
Scn1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247873,767,405 - 3,939,065 (-)NCBI

Position Markers
D3Rat181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,968,507 - 50,968,636 (+)MAPPER
Rnor_6.0352,408,191 - 52,408,319NCBIRnor6.0
Rnor_5.0359,034,932 - 59,035,060UniSTSRnor5.0
RGSC_v3.4348,254,474 - 48,254,603RGDRGSC3.4
RGSC_v3.4348,254,475 - 48,254,603UniSTSRGSC3.4
RGSC_v3.1348,150,760 - 48,150,995RGD
Celera350,556,511 - 50,556,639UniSTS
SHRSP x BN Map336.0899UniSTS
SHRSP x BN Map336.0899RGD
Cytogenetic Map3q21UniSTS
SCN1A_3451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,954,797 - 50,955,708 (+)MAPPER
Rnor_6.0352,390,819 - 52,391,729NCBIRnor6.0
Rnor_6.0352,383,990 - 52,384,900NCBIRnor6.0
Rnor_5.0359,011,819 - 59,012,729UniSTSRnor5.0
Rnor_5.0359,018,648 - 59,019,558UniSTSRnor5.0
RGSC_v3.4348,240,535 - 48,241,445UniSTSRGSC3.4
Celera350,542,805 - 50,543,715UniSTS
Cytogenetic Map3q21UniSTS
Scn1a  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,432,608 - 50,433,910 (+)MAPPER
Rnor_6.0351,817,586 - 51,818,887NCBIRnor6.0
Rnor_5.0358,452,236 - 58,453,537UniSTSRnor5.0
RGSC_v3.4347,718,197 - 47,719,498UniSTSRGSC3.4
Celera350,025,799 - 50,027,100UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map3q24UniSTS
Scn3a  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,432,608 - 50,433,887 (+)MAPPER
Rnor_6.0351,817,586 - 51,818,864NCBIRnor6.0
Rnor_5.0358,452,236 - 58,453,514UniSTSRnor5.0
RGSC_v3.4347,718,197 - 47,719,475UniSTSRGSC3.4
Celera350,025,799 - 50,027,077UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map8q32UniSTS
Cytogenetic Map3q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3195176874Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31009408193415837Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31011931879772001Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)310639528127023997Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31802366463023664Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32122380366223803Rat
631685Bp118Blood pressure QTL 1183.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)32465522569655225Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32932171474321714Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32968273274682732Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32968273274682732Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32968273274682732Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32968273274682732Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32968273274682732Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32990825574908255Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32990825574908255Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)330114912123700444Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)330846101172879276Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33110358972989078Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33110358972989078Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33110358972989078Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33110358972989078Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33110358972989078Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33110358972989078Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33213099777130997Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33213099777130997Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33347735462922975Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33347735481136227Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333477354108914061Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)334394121103141944Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)339248391140271184Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)34042292185422921Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)34052359354745780Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)34052359364880586Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)34052359392654473Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)34052359392654473Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)343295930108914061Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)343295930163640485Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)343295930163640485Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34540605894467785Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)345406058127023997Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)345406058177699992Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)348561928155263151Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)348562146115249962Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)351821836124513579Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)351822008120917851Rat


Related Rat Strains
The following Strains have been annotated to Scn1a


Genetic Models
This gene Scn1a is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:71
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000008026
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25
Low 26 8 8 47 7 8
Below cutoff 15 18 5 12 5 1 2 29 29 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M22253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083552   ⟹   ENSRNOP00000074819
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl352,381,975 - 52,447,622 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091259   ⟹   ENSRNOP00000073986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl352,388,812 - 52,510,507 (-)Ensembl
RefSeq Acc Id: NM_030875   ⟹   NP_110502
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,952,791 - 51,071,699 (-)NCBI
Rnor_6.0352,388,812 - 52,510,507 (-)NCBI
Rnor_5.0359,016,641 - 59,135,580 (-)NCBI
RGSC_v3.4348,238,528 - 48,364,143 (-)RGD
Celera350,540,798 - 50,655,298 (-)RGD
Sequence:
RefSeq Acc Id: XM_008761923   ⟹   XP_008760145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,469,509 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761924   ⟹   XP_008760146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761925   ⟹   XP_008760147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,470,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592055   ⟹   XP_017447544
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592056   ⟹   XP_017447545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592057   ⟹   XP_017447546
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592058   ⟹   XP_017447547
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105911   ⟹   XP_038961839
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,952,790 - 51,071,793 (-)NCBI
RefSeq Acc Id: XM_039105912   ⟹   XP_038961840
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,952,790 - 51,071,796 (-)NCBI
RefSeq Acc Id: XM_039105913   ⟹   XP_038961841
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,952,790 - 51,071,795 (-)NCBI
RefSeq Acc Id: XM_039105914   ⟹   XP_038961842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,974,073 - 51,071,804 (-)NCBI
RefSeq Acc Id: XM_039105915   ⟹   XP_038961843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2350,952,790 - 50,997,446 (-)NCBI
RefSeq Acc Id: XR_001837049
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,388,811 - 52,533,365 (-)NCBI
Sequence: