Scn1a (sodium channel, voltage-gated, type I, alpha) - Rat Genome Database

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Gene: Scn1a (sodium channel, voltage-gated, type I, alpha) Mus musculus
Analyze
Symbol: Scn1a
Name: sodium channel, voltage-gated, type I, alpha
RGD ID: 735778
MGI Page MGI
Description: Exhibits voltage-gated sodium channel activity. Involved in several processes, including adult walking behavior; detection of mechanical stimulus involved in sensory perception of pain; and neuronal action potential. Localizes to several cellular components, including T-tubule; Z disc; and main axon. Is expressed in brain; heart; sciatic nerve; sympathetic ganglion; and telencephalon. Used to study Dravet syndrome; autism spectrum disorder; and generalized epilepsy with febrile seizures plus. Human ortholog(s) of this gene implicated in Dravet syndrome; familial hemiplegic migraine 3; generalized epilepsy with febrile seizures plus; and generalized epilepsy with febrile seizures plus 2. Orthologous to human SCN1A (sodium voltage-gated channel alpha subunit 1); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: B230332M13; Nav; Nav1.1; sodium channel protein brain I subunit alpha; sodium channel protein type 1 subunit alpha; sodium channel protein type I subunit alpha; voltage-gated sodium channel subunit alpha Nav1.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39266,101,125 - 66,271,181 (-)NCBIGRCm39mm39
GRCm39 Ensembl266,101,122 - 66,271,184 (-)Ensembl
GRCm38266,270,781 - 66,440,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl266,270,778 - 66,440,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv37266,108,839 - 66,278,894 (-)NCBIGRCm37mm9NCBIm37
MGSCv36266,071,621 - 66,241,676 (-)NCBImm8
Celera267,950,131 - 68,119,920 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
absence epilepsy  (ISO)
autism spectrum disorder  (IEA,ISO)
autistic disorder  (ISO)
autosomal dominant nocturnal frontal lobe epilepsy  (ISO)
benign epilepsy with centrotemporal spikes  (ISO)
Benign Familial Infantile Seizures, 3  (ISO)
benign familial neonatal epilepsy  (ISO)
benign neonatal seizures  (ISO)
childhood onset epileptic encephalopathy  (ISO)
developmental and epileptic encephalopathy  (ISO)
developmental and epileptic encephalopathy 1  (ISO)
developmental and epileptic encephalopathy 11  (ISO)
Developmental and Epileptic Encephalopathy 6B  (ISO)
Developmental Disabilities  (ISO)
Dravet syndrome  (IEA,ISO)
early infantile epileptic encephalopathy  (ISO)
early myoclonic encephalopathy  (ISO)
epilepsy  (ISO)
epilepsy with generalized tonic-clonic seizures  (ISO)
Familial Febrile Seizures 3A  (ISO)
familial hemiplegic migraine  (ISO)
familial hemiplegic migraine 3  (ISO)
Febrile Seizures  (ISO)
focal epilepsy  (ISO)
Generalized Epilepsy  (ISO)
generalized epilepsy with febrile seizures plus  (IEA,ISO)
generalized epilepsy with febrile seizures plus 1  (ISO)
generalized epilepsy with febrile seizures plus 2  (ISO)
generalized epilepsy with febrile seizures plus 7  (ISO)
genetic disease  (ISO)
hereditary sensory and autonomic neuropathy type 2A  (ISO)
hereditary sensory neuropathy  (ISO)
Hip Contracture  (ISO)
Hypertelorism  (ISO)
intellectual disability  (ISO)
Language Development Disorders  (ISO)
Lennox-Gastaut syndrome  (ISO)
microcephaly  (ISO)
movement disease  (ISO)
Myoclonic Epilepsies  (ISO)
Neurodevelopmental Disorders  (ISO)
Plagiocephaly  (ISO)
syringomyelia  (ISO)
visual epilepsy  (ISO)
West syndrome  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal dendritic spine morphology  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal GABA-mediated receptor currents  (IAGP)
abnormal gait  (IAGP)
abnormal habituation to a novel odor  (IAGP)
abnormal heart electrocardiography waveform feature  (IAGP)
abnormal hippocampus granule cell morphology  (IAGP)
abnormal hippocampus neuron morphology  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal involuntary movement  (IAGP)
abnormal long term spatial reference memory  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal miniature inhibitory postsynaptic currents  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal neocortex morphology  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nest building behavior  (IAGP)
abnormal olfactory behavior  (IAGP)
abnormal postural reflex  (IAGP)
abnormal posture  (IAGP)
abnormal response to novel odor  (IAGP)
abnormal response to social novelty  (IAGP)
abnormal RR interval  (IAGP)
abnormal social investigation  (IAGP)
abnormal spike wave discharge  (IAGP)
abnormal synaptic transmission  (IAGP)
akinesia  (IAGP)
apnea  (IAGP)
ataxia  (IAGP)
bundle branch block  (IAGP)
circling  (IAGP)
clonic seizures  (IAGP)
convulsive seizures  (IAGP)
decreased body weight  (IAGP)
decreased brain size  (IAGP)
decreased brain weight  (IAGP)
decreased heart rate  (IAGP)
decreased survivor rate  (IAGP)
environmentally induced seizures  (IAGP)
head bobbing  (IAGP)
hyperactivity  (IAGP)
hypoactivity  (IAGP)
impaired ability to fire action potentials  (IAGP)
impaired contextual conditioning behavior  (IAGP)
impaired righting response  (IAGP)
impaired spatial learning  (IAGP)
increased anxiety-related response  (IAGP)
increased grooming behavior  (IAGP)
increased sensitivity to induced morbidity/mortality  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
increased thigmotaxis  (IAGP)
irregular heartbeat  (IAGP)
jerky movement  (IAGP)
maximal tonic hindlimb extension seizures  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prolonged QT interval  (IAGP)
reduced fertility  (IAGP)
seizures  (IAGP)
tonic seizures  (IAGP)
tonic-clonic seizures  (IAGP)
tremors  (IAGP)
ventricular fibrillation  (IAGP)
ventricular premature beat  (IAGP)
weight loss  (IAGP)
References

Additional References at PubMed
PMID:1679748   PMID:8062593   PMID:8169823   PMID:8751373   PMID:8812438   PMID:8974318   PMID:9726281   PMID:10349636   PMID:10827969   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:12477932   PMID:12898531   PMID:14973256   PMID:15007009   PMID:15123669   PMID:15272007   PMID:15746173   PMID:16141072   PMID:16141073   PMID:16482403   PMID:16602821   PMID:16921370  
PMID:16985003   PMID:17322896   PMID:17537961   PMID:17544618   PMID:17881658   PMID:17884088   PMID:17928448   PMID:18381897   PMID:18621130   PMID:18799693   PMID:18973680   PMID:19005038  
PMID:19234123   PMID:19409490   PMID:20100831   PMID:20562086   PMID:20875856   PMID:21156207   PMID:21190943   PMID:21873635   PMID:22223655   PMID:22260870   PMID:22908258   PMID:22914087  
PMID:23311867   PMID:23494229   PMID:23524966   PMID:23652591   PMID:23922229   PMID:23965409   PMID:24101488   PMID:24152123   PMID:24154525   PMID:24155976   PMID:24434335   PMID:24704313  
PMID:24862204   PMID:24952961   PMID:25024183   PMID:25281316   PMID:25378155   PMID:25725421   PMID:25766678   PMID:25855492   PMID:26017580   PMID:26410685   PMID:26656780   PMID:26694226  
PMID:26819275   PMID:27050589   PMID:27281198   PMID:27690330   PMID:27768696   PMID:28117367   PMID:28373025   PMID:28433711   PMID:28490751   PMID:28491900   PMID:28556246   PMID:28742937  
PMID:28784306   PMID:28973916   PMID:29127345   PMID:29329111   PMID:29337050   PMID:29487082   PMID:29551491   PMID:30076230   PMID:30104343   PMID:30175250   PMID:30347190   PMID:30605686  
PMID:30659983   PMID:30868126   PMID:30984098   PMID:30996233   PMID:31025941   PMID:31045243   PMID:31047779   PMID:31265868   PMID:31282864   PMID:31346088   PMID:31445030   PMID:31537705  
PMID:31578435   PMID:31758544   PMID:31870807   PMID:31940483   PMID:32102923   PMID:32114117   PMID:32126198   PMID:32321192   PMID:32325033   PMID:32445790   PMID:32865826   PMID:33069731  
PMID:33271326   PMID:33411788  


Genomics

Comparative Map Data
Scn1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39266,101,125 - 66,271,181 (-)NCBIGRCm39mm39
GRCm39 Ensembl266,101,122 - 66,271,184 (-)Ensembl
GRCm38266,270,781 - 66,440,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl266,270,778 - 66,440,840 (-)EnsemblGRCm38mm10GRCm38
MGSCv37266,108,839 - 66,278,894 (-)NCBIGRCm37mm9NCBIm37
MGSCv36266,071,621 - 66,241,676 (-)NCBImm8
Celera267,950,131 - 68,119,920 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.13NCBI
SCN1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2165,984,641 - 166,149,214 (-)EnsemblGRCh38hg38GRCh38
GRCh382165,984,641 - 166,149,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372166,841,151 - 167,005,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,553,916 - 166,638,395 (-)NCBINCBI36hg18NCBI36
Build 342166,673,232 - 166,755,638NCBI
Celera2160,455,660 - 160,540,161 (-)NCBI
Cytogenetic Map2q24.3NCBI
HuRef2158,727,062 - 158,886,965 (-)NCBIHuRef
CHM1_12166,851,977 - 167,011,835 (-)NCBICHM1_1
Scn1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2350,952,790 - 51,071,804 (-)NCBI
Rnor_6.0 Ensembl352,381,975 - 52,510,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0352,388,811 - 52,533,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0359,016,641 - 59,135,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,238,528 - 48,364,143 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1348,134,899 - 48,260,515 (-)NCBI
Celera350,540,798 - 50,655,298 (-)NCBICelera
Cytogenetic Map3q21NCBI
Scn1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,160,986 - 8,221,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,072,910 - 8,220,763 (+)NCBIChiLan1.0ChiLan1.0
SCN1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B170,736,651 - 170,826,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,736,651 - 170,822,014 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B53,258,614 - 53,348,131 (-)NCBIMhudiblu_PPA_v0panPan3
SCN1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13611,105,936 - 11,245,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3611,108,050 - 11,183,496 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3611,250,750 - 11,390,861 (-)NCBI
ROS_Cfam_1.03611,240,396 - 11,380,203 (-)NCBI
UMICH_Zoey_3.13611,322,130 - 11,462,589 (-)NCBI
UNSW_CanFamBas_1.03611,294,554 - 11,434,591 (-)NCBI
UU_Cfam_GSD_1.03611,407,225 - 11,547,338 (-)NCBI
Scn1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303128,271,735 - 128,421,841 (-)NCBI
SpeTri2.0NW_00493646913,194,769 - 13,345,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCN1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,529,875 - 72,678,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,529,866 - 72,696,715 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21581,177,412 - 81,188,630 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCN1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11051,490,204 - 51,653,916 (-)NCBI
Vero_WHO_p1.0NW_023666040147,883,083 - 148,032,547 (+)NCBI
Scn1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247873,767,405 - 3,939,065 (-)NCBI

Position Markers
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15F1UniSTS
Cytogenetic Map2C1.3UniSTS
cM Map1164.0UniSTS
cM Map236.0UniSTS
cM Map1560.0UniSTS
cM Map236.0UniSTS
Scn3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map970.0UniSTS
SCN1A_3451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38266,272,773 - 66,273,686UniSTSGRCm38
MGSCv37266,110,830 - 66,111,743UniSTSGRCm37
Celera267,952,122 - 67,953,035UniSTS
Cytogenetic Map2C1.3UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
cM Map236.0UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
Scn3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F3-F4UniSTS
Cytogenetic Map2C1.3UniSTS
cM Map970.0UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E1UniSTS
Cytogenetic Map2C1.3UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
Scn1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map15F1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22771204884183040Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31324555105313225Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3590731269907394Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3590731269907394Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3590731269907394Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23610166771779068Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23823971367242263Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23823971367242263Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23823971367242263Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)24008165374081799Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240995481115079684Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24193070775930831Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24369026877690412Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4369026877690412Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24369026877690412Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24369026877690412Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24369026877690412Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24436867378368673Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24533811668008524Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
4141809Pbwg1.1_mpostnatal body weight growth 1.1 (mouse)Not determined4830206882302151Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24830206882302151Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24843940282439590Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24843940282439590Mouse
1302085Mobe1_mmodifier of obesity 1 (mouse)Not determined24843940282439590Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24843940282439590Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174843940282439590Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25098897084988970Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25109283185092934Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25187293285873081Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25261767586617792Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25261767586617792Mouse
4142299Pbwg1.4_mpostnatal body weight growth 1.4 (mouse)Not determined5562407289624172Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25769377391693944Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25808964792089647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260690268119525037Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26317561097175769Mouse
1301405Etohr_methanol response acute (mouse)Not determined26317561097175769Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26317561097175769Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26317561097175769Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26317561097175769Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26317561097175769Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26373981097739957Mouse
13506939Pbwg1.12_mpostnatal body weight growth 1.12 (mouse)26530206868873081Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1803
Count of miRNA genes:529
Interacting mature miRNAs:633
Transcripts:ENSMUST00000077489, ENSMUST00000094951, ENSMUST00000112366, ENSMUST00000112371, ENSMUST00000129508, ENSMUST00000138910, ENSMUST00000156865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001313997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ810515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ993528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ993529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF591872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L42339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L42340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000077489   ⟹   ENSMUSP00000076697
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,270,784 - 66,351,195 (-)Ensembl
RefSeq Acc Id: ENSMUST00000094951   ⟹   ENSMUSP00000092558
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,272,885 - 66,351,177 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112366   ⟹   ENSMUSP00000107985
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,270,781 - 66,410,064 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112371   ⟹   ENSMUSP00000107990
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,270,782 - 66,440,837 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,348,364 - 66,440,814 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138910   ⟹   ENSMUSP00000116881
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,326,064 - 66,440,840 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156865   ⟹   ENSMUSP00000144633
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,272,892 - 66,318,139 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200839   ⟹   ENSMUSP00000144214
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl266,270,778 - 66,317,946 (-)Ensembl
RefSeq Acc Id: NM_001313997   ⟹   NP_001300926
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39266,101,126 - 66,271,181 (-)NCBI
GRCm38266,270,782 - 66,440,837 (-)NCBI