D3Rat274 Marker Search Result - Rat Genome Database

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Marker: D3Rat274

Symbol: D3Rat274
Previously known as: oxsts10815; R0321-D07; 
RGD ID: 42643
Expected Size: 203 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8364,865,026 - 64,865,229 (+)Marker Load Pipeline
mRatBN7.2344,456,324 - 44,456,527 (+)MAPPERmRatBN7.2
Rnor_6.0346,040,887 - 46,041,089NCBIRnor6.0
Rnor_5.0351,152,707 - 51,152,909UniSTSRnor5.0
RGSC_v3.4341,688,351 - 41,688,553UniSTSRGSC3.4
RGSC_v3.4341,688,350 - 41,688,554RGDRGSC3.4
RGSC_v3.1341,584,722 - 41,584,926RGD
Celera342,501,443 - 42,501,631UniSTS
SHRSP x BN Map332.8199UniSTS
SHRSP x BN Map332.8199RGD
Cytogenetic Map3q21UniSTS
Is Marker For: Genes:   Baz2b  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CACATACATACCTGCACGCG
Reverse Primer ATAATATGATCCGCGGTGACA
 
Template 
ATGTTCAAATATTCTATATTAGATTTTGAATGAATTTCTCTATTATTTTCCTATTTCATTTAAA
ACATTATAAAATAACTTGAATTAATATGATGTAAGTATGTGTGAGTGTATGTAAACCTGGGTGT
GTGTGTGAATCTAAAATTAAGAAATATTCCTCATTTTATGAAATTTCCCCCCTGTTCCAATGAG
TTCAAGGGTCTTTCCCACTTTCTTCTTTCTGTTACATTCATTGTGTCTGGTTTTATCTTGAGGT
CCCTTGATTCACTTGGGCCTTGAGCTTTGTGCAAGTTGATAGATATGGGTCTATTTTCATTTTT
GTACACGTGCCTATGCACACATACACATACATACCTGCACGCGCGCGCACATCACACACACACA
CACACACACACACACACACACACACACACAAATCTGTCTTAGAAAGAATCAAACTTTTTTAGCT
ACCATGGATAATTAACCTAGACGTTCATATATTTGAGACTCTTCATTCAAATATTTGAGGTGCA
CACCCACGAATGTCACCGCGGATCATATTATAATTCGTAAATTATGCTAAAATTTTTTTGGGGG
GGTCCTGCATACTTGTCCATAGCGCCATCATTTTATATTCCCCAACATTTTTAAAAGATAGCAC
TGGTACTCNACATGGAATATTACTCAGTATCAAACAAGAGTTTATGANTTCGTGGCNATGGTTG
GAACGGANAATCTCCGAGGAGTAACCATCCGAAGAATACTGGTAGNCTCNTGATNGGGTNTGCC
NTGCTGNTACNGNTCCTGACAAGANTGGNGNTGNAATGGANG


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1309801Baz2bbromodomain adjacent to zinc finger domain, 2B34438428244681619Rat
GenBank Nucleotide CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 60 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat

1 to 10 of 60 rows


Database
Acc Id
Source(s)
NCBI Gene 317627 UniSTS