Fign (fidgetin, microtubule severing factor)

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Gene: Fign (fidgetin, microtubule severing factor) Rattus norvegicus

Analyze

Symbol:

Fign

Name:

fidgetin, microtubule severing factor

RGD ID:

1308174

Description:

Predicted to enable microtubule severing ATPase activity. Predicted to be involved in microtubule cytoskeleton organization. Predicted to act upstream of or within locomotory behavior. Predicted to be located in nuclear matrix. Orthologous to human FIGN (fidgetin, microtubule severing factor); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

fidgetin; LOC295649

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FIGN (fidgetin, microtubule severing factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fign (fidgetin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fign (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FIGN (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FIGN (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fign (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FIGN (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FIGN (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fign (fidgetin, microtubule severing factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MAP3K8 (mitogen-activated protein kinase kinase kinase 8)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FIGN (fidgetin, microtubule severing factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fign (fidgetin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fign (fidgetin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Fign	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid)
Caenorhabditis elegans (roundworm):	figl-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	YTA6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	fign	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	48,637,510 - 48,760,772 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	48,642,496 - 48,760,787 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	51,971,883 - 52,089,709 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	60,555,393 - 60,673,211 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	58,345,891 - 58,463,522 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	49,992,250 - 50,120,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	49,992,397 - 50,120,392 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	56,637,401 - 56,764,164 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	46,006,895 - 46,130,212 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	45,903,265 - 46,026,612 (-)	NCBI
Celera	3	48,260,684 - 48,378,383 (-)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fonofos (ISO)

formaldehyde (ISO)

genistein (EXP)

melphalan (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

pentanal (ISO)

permethrin (EXP)

phenobarbital (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

terbufos (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

locomotory behavior (ISO)

microtubule cytoskeleton organization (IEA)

Cellular Component

nuclear matrix (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

microtubule severing ATPase activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16751186	PMID:36586551

Genomics

Comparative Map Data

Fign
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	48,637,510 - 48,760,772 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	48,642,496 - 48,760,787 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	51,971,883 - 52,089,709 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	60,555,393 - 60,673,211 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	58,345,891 - 58,463,522 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	49,992,250 - 50,120,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	49,992,397 - 50,120,392 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	56,637,401 - 56,764,164 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	46,006,895 - 46,130,212 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	45,903,265 - 46,026,612 (-)	NCBI
Celera	3	48,260,684 - 48,378,383 (-)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

FIGN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	163,602,611 - 163,736,008 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	163,593,396 - 163,736,012 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	164,459,121 - 164,592,518 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	164,172,364 - 164,300,759 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	164,291,556 - 164,293,651	NCBI
Celera	2	158,074,075 - 158,202,502 (-)	NCBI		Celera
Cytogenetic Map	2	q24.3	NCBI
HuRef	2	156,346,627 - 156,474,914 (-)	NCBI		HuRef
CHM1_1	2	164,470,008 - 164,598,433 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	164,059,859 - 164,193,293 (-)	NCBI		T2T-CHM13v2.0

Fign
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	63,801,852 - 63,928,382 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	63,801,851 - 63,928,382 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	63,971,508 - 64,098,038 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	63,971,507 - 64,098,038 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	63,815,418 - 63,936,064 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	63,778,670 - 63,898,827 (-)	NCBI		MGSCv36	mm8
Celera	2	65,662,900 - 65,783,578 (-)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	37.19	NCBI

Fign
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	10,271,014 - 10,393,859 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	10,271,125 - 10,400,631 (+)	NCBI	ChiLan1.0	ChiLan1.0

FIGN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2B	66,289,122 - 66,600,382 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	50,889,187 - 51,022,435 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	168,259,440 - 168,387,036 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	168,258,315 - 168,385,768 (-)	Ensembl	panpan1.1		panPan2

FIGN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	8,914,023 - 9,045,240 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	8,920,224 - 8,922,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	9,049,767 - 9,190,855 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	9,038,947 - 9,180,410 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	9,039,164 - 9,180,469 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	9,048,565 - 9,189,817 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	9,106,216 - 9,231,397 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	9,220,027 - 9,345,231 (-)	NCBI		UU_Cfam_GSD_1.0

Fign
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	126,059,464 - 126,183,759 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	15,434,127 - 15,553,438 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936469	15,434,150 - 15,556,167 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FIGN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	70,262,091 - 70,394,095 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	70,255,270 - 70,394,095 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	78,089,130 - 78,245,808 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FIGN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	49,035,120 - 49,453,559 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	49,052,032 - 49,178,962 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	150,341,369 - 150,475,693 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fign
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	1,770,852 - 1,899,842 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	1,770,794 - 1,904,398 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Fign
686 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	61
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000006175
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	27494621	50302886	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	27494621	50302886	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	27494621	50302886	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	30684642	75684642	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
11565451	Bw177	Body weight QTL 177		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	3	31426403	70668733	Rat
11565452	Kidm57	Kidney mass QTL 57		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	31426403	70668733	Rat
12879866	Cm94	Cardiac mass QTL 94		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	31426403	70668733	Rat
12879867	Cm95	Cardiac mass QTL 95		0.047	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	31426403	70668733	Rat
12879868	Am6	Aortic mass QTL 6		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	31426403	70668733	Rat
2301400	Cm68	Cardiac mass QTL 68		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	31426403	70668733	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	33703347	61017857	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	78196190	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	38192233	50749747	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	38192233	50749747	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	38192233	50749747	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	38710365	50302886	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	39454637	53296578	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	62951183	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat

Markers in Region

AU022255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	48,686,905 - 48,687,125 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	50,037,242 - 50,037,461	NCBI	Rnor6.0
Rnor_5.0	3	56,680,974 - 56,681,193	UniSTS	Rnor5.0
RGSC_v3.4	3	46,050,510 - 46,050,729	UniSTS	RGSC3.4
Celera	3	48,304,760 - 48,304,979	UniSTS
Cytogenetic Map	3	q21	UniSTS

FIGN__6723

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	48,643,620 - 48,644,215 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	49,993,126 - 49,993,720	NCBI	Rnor6.0
Rnor_5.0	3	56,637,905 - 56,638,499	UniSTS	Rnor5.0
RGSC_v3.4	3	46,007,561 - 46,008,155	UniSTS	RGSC3.4
Celera	3	48,261,421 - 48,262,015	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		4	4	4		4			35	2	4
Low	1	39	47	37	13	37	2	2	39	33	31	11	2
Below cutoff	2		6		6		6	9			6		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006175 ⟹ ENSRNOP00000006175

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	48,642,892 - 48,760,705 (-)	Ensembl
Rnor_6.0 Ensembl	3	49,992,397 - 50,120,392 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107158 ⟹ ENSRNOP00000081312

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	48,642,496 - 48,760,787 (-)	Ensembl

RefSeq Acc Id:

NM_001106484 ⟹ NP_001099954

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	48,642,884 - 48,760,705 (-)	NCBI
Rnor_6.0	3	49,992,393 - 50,120,392 (-)	NCBI
Rnor_5.0	3	56,637,401 - 56,764,164 (-)	NCBI
RGSC_v3.4	3	46,006,895 - 46,130,212 (-)	RGD
Celera	3	48,260,684 - 48,378,383 (-)	RGD

Sequence:

show sequence

TTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATG
ATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCG
ATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAGGTTAAATGAGTACCTGACGAAAG
GGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAA
CCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTACCAGCAAGAAATGATC
AGTAGCACCAGTGTTTATGGCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAAC
AGCACTTTGATATCACCTCGACTACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCA
TTTGCAACGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAAC
CTTCTGAAAAAATATGCAGAGAAATATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTAC
TCAGCAATTATTCAGACACACCGTCGGGACTAGTGAATGGTCGGAAAAATGATAGCGAACCCTG
GCAGTCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTGTGTTCCGGATGTCATCACCGCC
AGCAAAGCTGGTGTCAGTTCAGCCCTCCCTCCAGTAGATGTCTCGGCAAGTATAGGAAGCTCCC
CTGGGGTGGCCAGCAACCTGACAGAACCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAGT
ACCTAGTCTTCATGCGGGGCTCCCGTCTCAGGAATATGCTCCAGGATACAACGGATCGTATTTG
CATTCTACTTACAGCAGCCAGCCCACACCTGCACTTCCTTCGCCTCATCCATCCCCGTTGCATA
GCTCTGGGCTCCTGCAGCCACCACCCCCTCCTCCTCCTCCACCCGCCCTGGTCCCAGGCTACAA
TGGGACTTCCAATCTCTCCAGTTACAGCTATCCCTCTGCTAGCTATCCTCCTCAGACTGCCGTG
GGGTCTGGGTACAGCCCTGGTGGAGCACCCCCTCCTCCTTCCGCCTACCTGCCTTCAGGAATTC
CTGCGCCCACCCCTTTGCCCCCCACTACTGTTCCTGGCTACACCTACCAAGGTCATGGTTTGAC
ACCCATCGCACCCTCTGCTCTGACCAACAGTTCGGCAAGTTCTCTCAAAAGGAAAGCTTTCTAT
ATGGCAGGGCAAGGAGACATGGACTCCAGTTACGGAAATTACAGCTATGGCCAACAGAGATCAA
CGCAGAGTCCTATGTACCGAATGCCCGACAACAGCATTTCAAACTCGAATCGGGGGAATGGCTT
TGACAGAAATGCTGAAACATCATCCTTAGCATTTAAGCCAACAAAGCAGCTGATGCCCTCTGAG
CAGCAAAGGAAATTCAGCAGCCAGTCCAGTAGGGCTCTGACCCCTCCTTCCTATAGTACTGCTA
AAAATTCATTGGGATCAAGATCGAGTGAATCCTTTGGGAAGTATACGTCGCCAGTCATGAGTGA
GCACGGGGACGACCATCGGCAGCTCCTCGCTCATCCAATACAAGGTCCGGGACTCCGTGCAGCT
ACCTCATCCAACCACTCCGTGGACGAGCAACTGAAGAATACTGACACGCACCTCATTGACCTGG
TCACCAATGAGATCATCACCCAAGGACCTCCTGTGGACTGGAGCGACATAGCTGGTCTTGACCT
GGTGAAGGCGGTTATTAAGGAGGAGGTTTTGTGGCCAGTGTTGAGGTCAGATGCGTTCAGTGGG
CTGACAGCCTTACCTAGGAGCATCCTTCTCTTTGGACCTCGGGGTACAGGCAAAACACTATTGG
GCAGATGCATAGCCAGTCAGCTGGGGGCCACGTTTTTCAAAATTGCTGGTTCCGGACTCGTTGC
AAAGTGGCTAGGAGAAGCGGAGAAAATTATCCACGCCTCTTTTCTTGTGGCCAGGTGTCGCCAG
CCCTCGGTGATTTTTGTTAGTGACATTGACATGCTTCTCTCCTCTCAAGTGAGTGAGGAACACA
GTCCAGTGAGTCGGATGAGAACCGAATTTCTGATGCAGCTGGACACTGTACTGACTTCGGCTGA
GGACCAAATCGTAGTCATTTGTGCCACCAGTAAACCAGAAGAAATAGACGAATCTCTCCGGAGG
TACTTCATGAAAAGACTTTTAATCCCACTTCCTGACAGCACAGCGAGGCACCAGATAATAGTAC
AACTGCTCTCACAGCACAATTACTGTCTCAATGACAAGGAGTTTGCACTGCTCGTCCAGCGCAC
AGAAGGCTTTTCTGGACTAGACGTGGCTCATTTGTGCCAGGAAGCAGCAGTGGGTCCTCTCCAT
GCTATGCCAGCTACAGACCTTTCAGCCATTATGCCCAGCCAGTTAAGGCCCATTACATATCAAG
ACTTTGAAAATGCATTCTGCAAGATTCAGCCTAGCATATCTCAAAAAGAGCTTGATATGTATGT
TGAATGGAACAAAATGTTTGGTTGCAGTCAGTGATAACATCTTTAAAAAAATGTAATGAATGTT
GGCACACACATAAAACCTGCTCCATAGGGAATAGAGCCCCTTTCCAGTAGTGTTTCAATGGCTA
AGGGTACTGGGGAAGACAACGATTATGTTGCATCTTTAGAGTCAGGGGTAGCTTTGGAGGAAGC
AGGCCTCAGATGAGAGCCTGTGATTTGGAAGCCCCAGCTGACAGAAAGCATATACAATGTGGAT
GCTCAGATCGGTTCAAGCTAGACAACGCTCACCGAGAAGCAAGGTGCAAGCGTGTTGATTTCAG
AAGGACATGAACCTCGTGTGTTGATTCCATTCTGCTGTTCTCGAGATTTAGTTGCTGTCAAGTG
CCTGGAGTGGTACTTTATTTTTTTGTTTGCCTCACAATTACATTGGTGGCATGTGCTAATATAA
AGAGCTTTAACTTCAAACATTATTGGACTAAAGAGATGAACGGTTGTGTTACAACAGAAAACCA
GATTTTTTTGGCCATTTTAAGAGCAACAGTATTCCTCAATCCTGTCTGTTCTGCAGTGTTAGCT
AAGAACAGGTAAAACAGGGTAACGGTAATCTGGACCTTAATTTCTGCAGTTCATTTCTTTTAAT
GTTCTTGTCTGCAAAAACTCAGGAAAGTGATTGTGATTTGTACAGTACCTCAAAGGAATGTGTT
AAAAGCACTATGTACTGCTGAGAGTAATAGGGTAGGCTTCAATGTTACTTTATATTAAAATGTA
TGTTTACCTCAACAATTGGAGAATAGCAAGGAAAATTACTTTGAATGTATCCAGAAAAAG

hide sequence

RefSeq Acc Id:

XM_008761888 ⟹ XP_008760110

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	48,637,510 - 48,760,772 (-)	NCBI
Rnor_6.0	3	49,992,250 - 50,120,601 (-)	NCBI

Sequence:

show sequence

TCCCGGGGCTCCCGGCCCGCCGCGCTCCAACGCCCGCCTCTCGCCACTGCCTCCCGACGCCCGG
CCGCGCGGCCGCCTGCGTCTCTTTCTCCCTCTCTCCTTTGAAAACTGATCTTTGGCTCTTAGTG
TGAAAGTGATTTGAATTTGGCTCGGCGGCGCTCTGCGCCTGCGCTCAGCCTCTGGCATGCTGGC
TCCTTCCAAGCAGCTGTTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCC
TTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCA
GCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAGGTAAGG
AGAGCTTCGTAGTTTTTTACCATCTGTTTAAATTTTTTTGTTTTTGTTTTATTTTTAAAGAATA
TAGATAAATCCAAGACCTGTAGTGAGAAGAGGTCTCTGAGTTGTGCCGTAAACAGTAAATTTAA
TTTGCATTCATTTCTATTCTGTACGCCAACCTGCTGTCTAATTTCTCCGTACAAAGTAGCCCTG
AAACATTATGATGCATATTTCTGCAGCTTAATCATTGTAACAATAGTAAGGGATTAAGAGTTCG
TGACTGCAAGAATCTCGCTTTTCGCGATGTTGGGCTTACTCACTACTATCTTTTTACCTCAAAA
AAATAAAAAATAAGAAAGCGGAGCCATAGGGTGGGGCTAGACTTTCTTCGGGAACTAACTTCTA
AGTAAATAAGAAGTGTAAATAAGAATCTTGCACACACACAAAAAGTTGAGGTTAAATTACAATC
TCGTGGCTGGGGGATCGAGAAAAATGTCAGAGGATCGGTTGCAGAAAACTGTAAGCACATCATG
CGGGAGGGGGTACAGCGTGGTGGGCGTATTGTTGGCAAGGAACGGGAGAGAAAGATGTATAATT
TAATGGTATATACAATCCACTGATCCTATTACCGTCCTCCCCGGAGCTCTTGTTAGTTTCAATG
GGAGTGAGTGAAATTGACATGGACTTGCATTCCTGGTCATGTGCTTTTTTTTCCTTTCTTTCTT
CTCCTGTGATCTGAGATCCCCTTTTTGTTGATGTTGCTTTCCCCCTTAATTATATGCATGTAGG
TTAAATGAGTACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAA
AAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTT
GTGCTACCAGCAAGAAATGATCAGTAGCACCAGTGTTTATGGCTTGAAGATGCAGTGGACGCCG
GAGCATGCCCAGTGGCCAGAACAGCACTTTGATATCACCTCGACTACTCGGTCTCCCGCCCACA
AAGTTGAAGCCTATAGAGGTCATTTGCAACGCACCTACCAGTATGCCTGGGCGAATGATGACAT
ATCTGCTCTGACTGCATCCAACCTTCTGAAAAAATATGCAGAGAAATATTCTGGCATTTTGGAA
GGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACACACCGTCGGGACTAGTGAATGGTC
GGAAAAATGATAGCGAACCCTGGCAGTCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTG
TGTTCCGGATGTCATCACCGCCAGCAAAGCTGGTGTCAGTTCAGCCCTCCCTCCAGTAGATGTC
TCGGCAAGTATAGGAAGCTCCCCTGGGGTGGCCAGCAACCTGACAGAACCAAGTTACTCAAGTA
GTACCTGTGGAAGCCACACAGTACCTAGTCTTCATGCGGGGCTCCCGTCTCAGGAATATGCTCC
AGGATACAACGGATCGTATTTGCATTCTACTTACAGCAGCCAGCCCACACCTGCACTTCCTTCG
CCTCATCCATCCCCGTTGCATAGCTCTGGGCTCCTGCAGCCACCACCCCCTCCTCCTCCTCCAC
CCGCCCTGGTCCCAGGCTACAATGGGACTTCCAATCTCTCCAGTTACAGCTATCCCTCTGCTAG
CTATCCTCCTCAGACTGCCGTGGGGTCTGGGTACAGCCCTGGTGGAGCACCCCCTCCTCCTTCC
GCCTACCTGCCTTCAGGAATTCCTGCGCCCACCCCTTTGCCCCCCACTACTGTTCCTGGCTACA
CCTACCAAGGTCATGGTTTGACACCCATCGCACCCTCTGCTCTGACCAACAGTTCGGCAAGTTC
TCTCAAAAGGAAAGCTTTCTATATGGCAGGGCAAGGAGACATGGACTCCAGTTACGGAAATTAC
AGCTATGGCCAACAGAGATCAACGCAGAGTCCTATGTACCGAATGCCCGACAACAGCATTTCAA
ACTCGAATCGGGGGAATGGCTTTGACAGAAATGCTGAAACATCATCCTTAGCATTTAAGCCAAC
AAAGCAGCTGATGCCCTCTGAGCAGCAAAGGAAATTCAGCAGCCAGTCCAGTAGGGCTCTGACC
CCTCCTTCCTATAGTACTGCTAAAAATTCATTGGGATCAAGATCGAGTGAATCCTTTGGGAAGT
ATACGTCGCCAGTCATGAGTGAGCACGGGGACGACCATCGGCAGCTCCTCGCTCATCCAATACA
AGGTCCGGGACTCCGTGCAGCTACCTCATCCAACCACTCCGTGGACGAGCAACTGAAGAATACT
GACACGCACCTCATTGACCTGGTCACCAATGAGATCATCACCCAAGGACCTCCTGTGGACTGGA
GCGACATAGCTGGTCTTGACCTGGTGAAGGCGGTTATTAAGGAGGAGGTTTTGTGGCCAGTGTT
GAGGTCAGATGCGTTCAGTGGGCTGACAGCCTTACCTAGGAGCATCCTTCTCTTTGGACCTCGG
GGTACAGGCAAAACACTATTGGGCAGATGCATAGCCAGTCAGCTGGGGGCCACGTTTTTCAAAA
TTGCTGGTTCCGGACTCGTTGCAAAGTGGCTAGGAGAAGCGGAGAAAATTATCCACGCCTCTTT
TCTTGTGGCCAGGTGTCGCCAGCCCTCGGTGATTTTTGTTAGTGACATTGACATGCTTCTCTCC
TCTCAAGTGAGTGAGGAACACAGTCCAGTGAGTCGGATGAGAACCGAATTTCTGATGCAGCTGG
ACACTGTACTGACTTCGGCTGAGGACCAAATCGTAGTCATTTGTGCCACCAGTAAACCAGAAGA
AATAGACGAATCTCTCCGGAGGTACTTCATGAAAAGACTTTTAATCCCACTTCCTGACAGCACA
GCGAGGCACCAGATAATAGTACAACTGCTCTCACAGCACAATTACTGTCTCAATGACAAGGAGT
TTGCACTGCTCGTCCAGCGCACAGAAGGCTTTTCTGGACTAGACGTGGCTCATTTGTGCCAGGA
AGCAGCAGTGGGTCCTCTCCATGCTATGCCAGCTACAGACCTTTCAGCCATTATGCCCAGCCAG
TTAAGGCCCATTACATATCAAGACTTTGAAAATGCATTCTGCAAGATTCAGCCTAGCATATCTC
AAAAAGAGCTTGATATGTATGTTGAATGGAACAAAATGTTTGGTTGCAGTCAGTGATAACATCT
TTAAAAAAATGTAATGAATGTTGGCACACACATAAAACCTGCTCCATAGGGAATAGAGCCCCTT
TCCAGTAGTGTTTCAATGGCTAAGGGTACTGGGGAAGACAACGATTATGTTGCATCTTTAGAGT
CAGGGGTAGCTTTGGAGGAAGCAGGCCTCAGATGAGAGCCTGTGATTTGGAAGCCCCAGCTGAC
AGAAAGCATATACAATGTGGATGCTCAGATCGGTTCAAGCTAGACAACGCTCACCGAGAAGCAA
GGTGCAAGCGTGTTGATTTCAGAAGGACATGAACCTCGTGTGTTGATTCCATTCTGCTGTTCTC
GAGATTTAGTTGCTGTCAAGTGCCTGGAGTGGTACTTTATTTTTTTGTTTGCCTCACAATTACA
TTGGTGGCATGTGCTAATATAAAGAGCTTTAACTTCAAACATTATTGGACTAAAGAGATGAACG
GTTGTGTTACAACAGAAAACCAGATTTTTTTGGCCATTTTAAGAGCAACAGTATTCCTCAATCC
TGTCTGTTCTGCAGTGTTAGCTAAGAACAGGTAAAACAGGGAACGGTAATCTGGACCTTAATTT
CTGCAGTTCATTTCTTTTAATGTTCTTGTCTGCAAAAACTCAGGAAAGTGATTGTGATTTGTAC
AGTACCTCAAAGGATGTGTTAAAAGCACTATGTACTGCTGAGAGTAATAGGGTAGGCTTCAATG
TTACTTTATATTAAAATGTATGTTTACCTCAACAATTGGAGAATAGCAAGGAAAATTACTTTGA
ATGTATCCAGAAAAGAAAAGAAAAATACTGAAGGTGTGATACAACTGAATATTTAAGGTTTAAA
AGTAGAGGTGGAAGGATTTTTTTTTAAAAGTTTCTTACTAATTATGGGGAATTATTAACCAGAG
CAGAACAGTTACTGAAGAGTTTCTTGATT

hide sequence

RefSeq Acc Id:

XM_008761889 ⟹ XP_008760111

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	48,637,510 - 48,713,087 (-)	NCBI
Rnor_6.0	3	49,992,250 - 50,049,778 (-)	NCBI

Sequence:

show sequence

TATGTGTGCGCATGCGCGTACATATGCACATGTATTTGTGCCACAGCATATGTGTCCTGGGTTG
AAAGACAGTTTGCAGGAATCTGTTCCTTCCTTCCACCATGTGGCTTCTGGGTACTGAACTACAG
TTTTCATGTTTGGCAAACGCCTCTGCTGCTGATCCAGTTTTTTGGTTCAGCTTCATAATTTTCA
CCATTTCATACATTCATGTTTTCTAGTCAGCATTTCTAGACAGCTGTGTATTTGCATTTAAACC
ATATCAATGTATGGTTAAAACGTAATGTAAAATATAGAAAGTACAAAATAAATATACGAAATGA
AAAAATATTCGAAAATACAACAGAATGGCAGTGTAAAGAATTTAAAATAGAATTAATACATTTC
CTTCAGACCGGCTTAAAAAGCTGCAGCTCCCAATGCTATCAGGCCCATGCATGCTAAATTTAGT
GGCCGCCCTAAAGCATAAAGGACTATGTGCACTAATAGGGTAGCGTATACCATTTCAGTTTTTC
ATAGATTTTTAATTGAAGTACTTCATTCAAAAAATGTCCTCAGCCCATCCCTTTGCATTATACA
CTGAAAGTTGTAATTGAGCCGTAATTTATGCAAAAGTTCTGAAAAATATCTTAGTAAGTAATTC
AAAGATGCCCCCAAATGAAGACAGTAACTGGGGTGTTATCATTACTGCATAGTGGTCATTATCT
TCGGTTATCTGTTTGTCAAGTATGTTTTCTAATTCTTATTATGATTGAAGAATGAGAAAGAAGA
AAAGAGAAAGGAGATGCTTTGCCCTGGGAACTAATACAATAGATCTTCAGGGACTTCAAAGCAG
AACAATTATCTCAGCCACAGGGACGATCCAGTGTCCCTTTGTTAGCCATTTATGACACATGTGC
AAGACACTGACATTAATTTAGAACCTAGCATTACTAGTCTTGCCGTGTTGCCAAGAGATTTCTG
TCTCAATAATATATTGATTATATTATTGTAATGAGTTGGCTGATGACTCAGAGTTACAAAGAAG
TTGTACTAAATTTATTCGAGGGGGCAATGCTGGAAACTTCAGAATTAATATGAGCTGTTTCATC
CCCCTTTCATGCCCATTTGTACCTACATTATTAATTGATACCACCCCATGCTCTTTAGTGTGAA
TCAGAATAGGAACTAATTATCTGAAGTTATATTGTTCTTAACACATTTATGGTTGTTTGGGGGA
AAAATATATATATACATATACACATATATGTATGTATGTATATCCTTCCCAATGATGTAAACTT
GACTCAGTAAAATAATTCTGGGTTTTGGCTATTTTCTCAAAAATGATTCTTGGCTGGTCAGCTT
TTGAAATCACTTGGCCAATGCTGGCCCTTCCCTACTAGTCTCAGACAGGTTGTATCCATGGGGT
AAACCAATTCATCTCAGGGTGTAAAAACTCTGTGGACCTTTGAGCTCACAGTGTACCTGCTTCC
CATTGAATGCTCGTTTGGGAGTATTTTGTTGGCCACAGTCCTTTTTCTTGTATATCGGTCATAC
TGCCTGTAACACATCTGGTGACACTACCTGCTTGCCTGCAGGAAGCCTGAAATCCGTGGGAACA
CCATCTTTTCTTTTAAGGGGCAGTCCATTATGAAAACTGATATTCTTTTCTATCTGGGCTCCCT
CTTCCACTGTTGTCTCCTATTCATAATCCCCTCCCACTGAGCTCCGTACTGGATAGCTGCCAGT
GGCCGAGGGCAGAGGAACTGATGATGCCAGCCAGCTAGCTGAGTTCACATGCCATGTCTGGAGC
ACTCACAGCGACTGGGTGTGTTGCCTCCGAAGCAATCACAAACCGGTGCGTCCTGTCTTATGAA
AGAGTAAAATGATGCCTGCCAGTCCTTCCAGCAGGAGTGATGCTGTGAGTCATCACATTCTACA
GCCGTTCCCATTCCGGGCTGATCTTGATGTTATGGTTGGTTAAGTATTATTGATGAAGTAATCA
TGTTCCTAAAATAACCCAATTACATCTGTTAAAAAGGTTTCGTGAAAAATAAACAGACCATCTT
ATCATGAAGGCTTGCAAGAAGGCAGAGGTAGTCAAGTGTTTTCCACATTTGTTTGACTGTATTG
TGCACACATTCCTTTTGCACACATATCAGGTCATGTGCTTACTATAACTGGGGGAAGGTAGTAA
GTAGCTGAAATTACTTAATGCATAATAAAAGATTATGGACAAATTTTAAAAACTAGGGACTTAC
ATTTTATCAATAAGCTAAATAGTAATGAGAGAAGAGAGACATATAAAGCAATTAAAATTGAATA
TGAGGCAATTTAAATACAAATAGGCAGGAATGGACTCTTGTGCTGTGTGTGCTCAGCTCTCAGT
GTGATTTATTTGGTGACAACACTGTACTATACACTCAGGAGTAATGGTAATTGGGTAATTATTT
TTAACTTTTTGGCAGGGGCTTCTATGTTGCTAGACTTCTGTTTTTTTTATTCTAAAGAATGAAT
ATCCATTTAAAAGACACTTCTTACTCTATGATTTCCACAAGAAAAAAAATCACAAGTCTCATTG
CGTGTGGCAGGAATAACATTTTATCTTGTTAGTAGTTGACGTGATTCGTTGTGGCAGAAAAAAA
TTAAAAGGGATCACATTTATTTTAGTATCATTATAAAATTATTGTGGTGTACCCAAGCAAATCA
CTCTAGTTTTGTTAAGGCTAAAATCTGCTGTCCGCTAGAATTACTGTCTTTTTTGCATAATTAA
GAAAACACCAATTATGAGATATTCACTCACAGTTTTAGATCTTCTGTTCCTTCATAAAATATTT
GAACATAGGGCTATGGAGATAACTCAAGAGGTCTAAGTGCTTGCTGGGCAGGTATGAAGAACCC
ACGTCAACTACTCAATAGCCACATAAAATTCAGATGAACGGAATTCTCATCACTCCCACGGGAG
TGCGGAGACATCTCTAGATGCTTGAAAATCAGCTTGCCAGCGATACTCAGGGAAAATACATATC
GTCTCAAACAAGGTAGAAGACTAGGACCCACAAGCCAAGGCTGCCCTCTGACCTTCACACATGT
GTCATATCCCATGTTCCCATATTCATACACACAGGTGCACACATGTACACATGCAAGTACATGC
ATACGCATGGCTCATGTGCACGCACACATCACAGTTTAACAACTGAACAGCTTTTGCTTCTGTC
GGAATGAGTGTCATGCTGGATGTACTTGCATGCACATGAGATAGGAGCAAGGTAATTGCCATGA
ATTGCAGACAAGCCTGGACTACATGGAGAGGTTAAGCACAACTTTGACTACATGATAAAATTCT
CTCTCAACGTGAATATAAATACTTCCCTCTATAATAGTAGTGTATGTGTTGAGCTTAAGTTAAT
CATAGGTGTCCTTAGCAATTAGGAAAAAAAAAGAAACATTTTTGTCACAAAGGAAGTGGAGGTA
GTCATCATGATGTACATAGTAGTTTTCTTGGGTGTTTACACAGCACTGTACAATTTGTTAAGTC
TTTTATATCTCTTTGCAAGAGTGCCAGAATGATCTGAGGTACAACGTTTGTAAAAGAAAGGAAG
GAAGAAAAAAGGGAAGGAAGAAAGAAAGAAGACGTTTTACTCAGCTATGCTTTGAGTGATGGTT
TGATTATAGAATGCCCCATTTCCTTTTACCTTCAATCTACAAAGTTTAAAGTGGATTTCTTTCC
AACCCATAAATATAACAATTAGAGCTTCATTTAGATGATAACATGTATAGAGTCAAATGCATAT
TTCATACTTGTATGAGGGGGTAGCTATCCATGGATATCATTATAGTGATCGGCATGCCTGCTTA
TTTCTAGGTGACTGAAGTGGATGCTTTGATGTTGTGAGAGATTTGGGTATACATTTTTGAGTGT
TTTTATTTATTTATTTTTTGCCAGTCTTAATTTCAGCATCAAAATGTAAATACATAAAAGGAGA
GGCTAAGTTGACTAAAACTCAAAGCAGAAGGAACGGGTGGACCTCCATCTAAAAATCAACAACA
TAGTGATGGGCGCCAGCATGAGTGCCCATGTCTATTTACAATCCCCATCCCCACCCCCCAAAAA
TGAAATTTGTAAGAAGATGGCCTCTTTTCCTTTAATTACTAGAAATGATATTTACTCCTTTGTC
AACTATGCCATTATGAAGTCCTTCTGAAATACACCCTAATATCTTCTGAATTTTGCTTCTTTTA
GGCTTTCTTTAACCAAGGATGGGAGGAAAAACAATTTTATTAGCATAGAGTCATCTCTTAGGAA
GAACAGGGATTGAAGTTAAGTCTGAGTTTCATGCTTTCATTTCCCCCAAGTGCCTGTGATCAAA
GAAATGATGTGCAAGAAGTGGAATAGGTTATCTCATGGAAGCTTTAGGCAAAGTTCAAGGAAGT
TTACCATTGCCTCCTCCTATATGAACATTGTCCTTTTAGGCCTGGTGATCATCTCCTGGCACTC
TCTGTTTTTACTTTTAGTTTTCCATAGCCTGATGGGACAGTCATTTCCAGTTGTTCTCCTGTCT
CCACCAAGCTTGCTAGCACACCTCCCAAGGTTCGATAACTCTGCACTTTCTTTACTGCTTTTAC
ACAAACACAGAGCATCTGTAATTACATTTATTTATGATTTTTCCTCTCAAATTAGTTATATCCT
ATACCTGATTATGTATTTACTTTACGTGGCTGTCCAGCTGGTGTTTTTGAAATGAAGAGTCGGT
TGAATAACTTTATTTAGTCTTACACATACATTATTTCCCCAGACTCTTGCTTCAGAATTTATAA
CATTGATGTCCGCAATCAGCAAGCTTTCTGAGAAGATCTTTGCCACTCAGTATGAGCCTCTGTT
AATCCATTTCAGCAGCAACTACTCAGTGTGTCACTAATTGGTAGAGAGAAGCCCTTTCTGACCA
GTGGAATTGTGCAGATAGCCATACCCACTTCCCTCACTGTTTGATCATCCCTGTCTAATTCTTG
GAACAGACTACATCTTATCCTTACCAGATACTTTTCTTGTATGTTATGTGCAAAGGTTTTCTGG
TTTTGATTGGTTTGGTTTTTGTGGTTCTTTCCTTGAATTGTGTGAGAGTTCGAATAAAATCAGT
GTTAAGTACACGGGGTCCTGCTTGATTGTTAATCCAGCCATTCATAATCATAAACACATATCAA
GGATCTTCTATCTTCTGGGATCTGTGCTAGACCAGGAGAGATGATTAAAGTGCACATCTTGCTC
TCCAATGATCACAGTCTTGAAATGGGGGAAGGTAAATAAACAATTAAGTATAGCATGCCCTCAA
AACCAGATGAGGCTGTGATTAAGTCTAAGGGGAATGTCGAGTTGGAGGAAACTTAGTGGATTCA
AGATTTACTCGGGCTTTAAAAGATGAATGGGATTTTCCAGGTAAACACTAGGAAAGTAACAGGG
ATTTCCAGATGGAGATACTAACATATGTCAAGGCACAGTGGTGCGCAGTACCTCGGGAATATCT
GCAAATATTTGTTCTGTCAGGAGTGTGGAATGTGAGTGGAGAAAGGAGAGACTGGAGCTGGAAT
GATGGGTAATAAGAGCCTGGTGTTTGCTATTAGGAAGCCTAGACCATCTGTCCTGGGAAAACTA
GTAAATGCATAGTTGCTTTGCAGGTGGAAATGGTTTATGTTTTTTAGAATAGAAAGATGTTTTG
ACTTAAAGATATGGAGGTGAATTGGAAAGCAATGGGAAAAGCAACGATGAAAACTTGAATGGTG
TAAAACATGGGACTAAAGGAAAGAAAACAGAGTAGGGAACGAAGTCAGAGGGGAACTTTGTATT
ATCGAGTCTGTATGAATGAGAAATGGTTCAGCATGCAGATGAACTAGAAAGGATGATGCCAGGG
TTACTATTTCTGGACCTTGGGCCTCTGGAGTAACTCTAACCAAAAATAGAGGACGAAGAAAGAA
GAACAGGTTCAGAGGGTGTAGCAGTCAGTTAATAAACAGATTGTGTACTAAGTGGGTTTGTTTA
GCAAGCCACTGTGCTTGAAAATACATGTTTTTAGTTCGTGGGTTTTGTTCGATTTCGTTTATTT
ATTTTTGCCTGGTTTTAAGTGGATTTTGTTTCAGAGTCAAGTTGGATCATTTATAACAATTCAA
CAGAAATATGAACTATCAGAATCTCTATTGTTTTTTCCACTAACTCTTCTATGGTTTTTTGTAC
CGTAAATTCAGCCATTCTGGTACCACACTTGCTGTATCTTCAAAATTACCTTCATACTTTTAAC
CTTTCCAAATGTATCTTGTATTCCAGGTCCCAGGTCTTTATATATGGACACAAAGAATGATAGA
ATTCTAGGTCTTGGGAGGAGGCTTGAAGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAA
CAGCACTTTGATATCACCTCGACTACTCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTC
ATTTGCAACGCACCTACCAGTATGCCTGGGCGAATGATGACATATCTGCTCTGACTGCATCCAA
CCTTCTGAAAAAATATGCAGAGAAATATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTA
CTCAGCAATTATTCAGACACACCGTCGGGACTAGTGAATGGTCGGAAAAATGATAGCGAACCCT
GGCAGTCTTCCTTGAATTCAGAAGCCGTTTATCCTATGAACTGTGTTCCGGATGTCATCACCGC
CAGCAAAGCTGGTGTCAGTTCAGCCCTCCCTCCAGTAGATGTCTCGGCAAGTATAGGAAGCTCC
CCTGGGGTGGCCAGCAACCTGACAGAACCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAG
TACCTAGTCTTCATGCGGGGCTCCCGTCTCAGGAATATGCTCCAGGATACAACGGATCGTATTT
GCATTCTACTTACAGCAGCCAGCCCACACCTGCACTTCCTTCGCCTCATCCATCCCCGTTGCAT
AGCTCTGGGCTCCTGCAGCCACCACCCCCTCCTCCTCCTCCACCCGCCCTGGTCCCAGGCTACA
ATGGGACTTCCAATCTCTCCAGTTACAGCTATCCCTCTGCTAGCTATCCTCCTCAGACTGCCGT
GGGGTCTGGGTACAGCCCTGGTGGAGCACCCCCTCCTCCTTCCGCCTACCTGCCTTCAGGAATT
CCTGCGCCCACCCCTTTGCCCCCCACTACTGTTCCTGGCTACACCTACCAAGGTCATGGTTTGA
CACCCATCGCACCCTCTGCTCTGACCAACAGTTCGGCAAGTTCTCTCAAAAGGAAAGCTTTCTA
TATGGCAGGGCAAGGAGACATGGACTCCAGTTACGGAAATTACAGCTATGGCCAACAGAGATCA
ACGCAGAGTCCTATGTACCGAATGCCCGACAACAGCATTTCAAACTCGAATCGGGGGAATGGCT
TTGACAGAAATGCTGAAACATCATCCTTAGCATTTAAGCCAACAAAGCAGCTGATGCCCTCTGA
GCAGCAAAGGAAATTCAGCAGCCAGTCCAGTAGGGCTCTGACCCCTCCTTCCTATAGTACTGCT
AAAAATTCATTGGGATCAAGATCGAGTGAATCCTTTGGGAAGTATACGTCGCCAGTCATGAGTG
AGCACGGGGACGACCATCGGCAGCTCCTCGCTCATCCAATACAAGGTCCGGGACTCCGTGCAGC
TACCTCATCCAACCACTCCGTGGACGAGCAACTGAAGAATACTGACACGCACCTCATTGACCTG
GTCACCAATGAGATCATCACCCAAGGACCTCCTGTGGACTGGAGCGACATAGCTGGTCTTGACC
TGGTGAAGGCGGTTATTAAGGAGGAGGTTTTGTGGCCAGTGTTGAGGTCAGATGCGTTCAGTGG
GCTGACAGCCTTACCTAGGAGCATCCTTCTCTTTGGACCTCGGGGTACAGGCAAAACACTATTG
GGCAGATGCATAGCCAGTCAGCTGGGGGCCACGTTTTTCAAAATTGCTGGTTCCGGACTCGTTG
CAAAGTGGCTAGGAGAAGCGGAGAAAATTATCCACGCCTCTTTTCTTGTGGCCAGGTGTCGCCA
GCCCTCGGTGATTTTTGTTAGTGACATTGACATGCTTCTCTCCTCTCAAGTGAGTGAGGAACAC
AGTCCAGTGAGTCGGATGAGAACCGAATTTCTGATGCAGCTGGACACTGTACTGACTTCGGCTG
AGGACCAAATCGTAGTCATTTGTGCCACCAGTAAACCAGAAGAAATAGACGAATCTCTCCGGAG
GTACTTCATGAAAAGACTTTTAATCCCACTTCCTGACAGCACAGCGAGGCACCAGATAATAGTA
CAACTGCTCTCACAGCACAATTACTGTCTCAATGACAAGGAGTTTGCACTGCTCGTCCAGCGCA
CAGAAGGCTTTTCTGGACTAGACGTGGCTCATTTGTGCCAGGAAGCAGCAGTGGGTCCTCTCCA
TGCTATGCCAGCTACAGACCTTTCAGCCATTATGCCCAGCCAGTTAAGGCCCATTACATATCAA
GACTTTGAAAATGCATTCTGCAAGATTCAGCCTAGCATATCTCAAAAAGAGCTTGATATGTATG
TTGAATGGAACAAAATGTTTGGTTGCAGTCAGTGATAACATCTTTAAAAAAATGTAATGAATGT
TGGCACACACATAAAACCTGCTCCATAGGGAATAGAGCCCCTTTCCAGTAGTGTTTCAATGGCT
AAGGGTACTGGGGAAGACAACGATTATGTTGCATCTTTAGAGTCAGGGGTAGCTTTGGAGGAAG
CAGGCCTCAGATGAGAGCCTGTGATTTGGAAGCCCCAGCTGACAGAAAGCATATACAATGTGGA
TGCTCAGATCGGTTCAAGCTAGACAACGCTCACCGAGAAGCAAGGTGCAAGCGTGTTGATTTCA
GAAGGACATGAACCTCGTGTGTTGATTCCATTCTGCTGTTCTCGAGATTTAGTTGCTGTCAAGT
GCCTGGAGTGGTACTTTATTTTTTTGTTTGCCTCACAATTACATTGGTGGCATGTGCTAATATA
AAGAGCTTTAACTTCAAACATTATTGGACTAAAGAGATGAACGGTTGTGTTACAACAGAAAACC
AGATTTTTTTGGCCATTTTAAGAGCAACAGTATTCCTCAATCCTGTCTGTTCTGCAGTGTTAGC
TAAGAACAGGTAAAACAGGGAACGGTAATCTGGACCTTAATTTCTGCAGTTCATTTCTTTTAAT
GTTCTTGTCTGCAAAAACTCAGGAAAGTGATTGTGATTTGTACAGTACCTCAAAGGATGTGTTA
AAAGCACTATGTACTGCTGAGAGTAATAGGGTAGGCTTCAATGTTACTTTATATTAAAATGTAT
GTTTACCTCAACAATTGGAGAATAGCAAGGAAAATTACTTTGAATGTATCCAGAAAAGAAAAGA
AAAATACTGAAGGTGTGATACAACTGAATATTTAAGGTTTAAAAGTAGAGGTGGAAGGATTTTT
TTTTAAAAGTTTCTTACTAATTATGGGGAATTATTAACCAGAGCAGAACAGTTACTGAAGAGTT
TCTTGATT

hide sequence

RefSeq Acc Id:

XM_008761890 ⟹ XP_008760112

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	48,637,510 - 48,760,771 (-)	NCBI
Rnor_6.0	3	49,992,250 - 50,120,601 (-)	NCBI

Sequence:

show sequence

TCCCGGGGCTCCCGGCCCGCCGCGCTCCAACGCCCGCCTCTCGCCACTGCCTCCCGACGCCCGG
CCGCGCGGCCGCCTGCGTCTCTTTCTCCCTCTCTCCTTTGAAAACTGATCTTTGGCTCTTAGTG
TGAAAGTGATTTGAATTTGGCTCGGCGGCGCTCTGCGCCTGCGCTCAGCCTCTGGCATGCTGGC
TCCTTCCAAGCAGCTGTTTTGGGTTTGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCC
TTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCA
GCAAACACATCGGATCGATGCTACGCTAACCTATCGGGAGCTCGCTCTGCGCGTCCAGGCTTGA
AGATGCAGTGGACGCCGGAGCATGCCCAGTGGCCAGAACAGCACTTTGATATCACCTCGACTAC
TCGGTCTCCCGCCCACAAAGTTGAAGCCTATAGAGGTCATTTGCAACGCACCTACCAGTATGCC
TGGGCGAATGATGACATATCTGCTCTGACTGCATCCAACCTTCTGAAAAAATATGCAGAGAAAT
ATTCTGGCATTTTGGAAGGTCCCGTAGACCGACCTGTACTCAGCAATTATTCAGACACACCGTC
GGGACTAGTGAATGGTCGGAAAAATGATAGCGAACCCTGGCAGTCTTCCTTGAATTCAGAAGCC
GTTTATCCTATGAACTGTGTTCCGGATGTCATCACCGCCAGCAAAGCTGGTGTCAGTTCAGCCC
TCCCTCCAGTAGATGTCTCGGCAAGTATAGGAAGCTCCCCTGGGGTGGCCAGCAACCTGACAGA
ACCAAGTTACTCAAGTAGTACCTGTGGAAGCCACACAGTACCTAGTCTTCATGCGGGGCTCCCG
TCTCAGGAATATGCTCCAGGATACAACGGATCGTATTTGCATTCTACTTACAGCAGCCAGCCCA
CACCTGCACTTCCTTCGCCTCATCCATCCCCGTTGCATAGCTCTGGGCTCCTGCAGCCACCACC
CCCTCCTCCTCCTCCACCCGCCCTGGTCCCAGGCTACAATGGGACTTCCAATCTCTCCAGTTAC
AGCTATCCCTCTGCTAGCTATCCTCCTCAGACTGCCGTGGGGTCTGGGTACAGCCCTGGTGGAG
CACCCCCTCCTCCTTCCGCCTACCTGCCTTCAGGAATTCCTGCGCCCACCCCTTTGCCCCCCAC
TACTGTTCCTGGCTACACCTACCAAGGTCATGGTTTGACACCCATCGCACCCTCTGCTCTGACC
AACAGTTCGGCAAGTTCTCTCAAAAGGAAAGCTTTCTATATGGCAGGGCAAGGAGACATGGACT
CCAGTTACGGAAATTACAGCTATGGCCAACAGAGATCAACGCAGAGTCCTATGTACCGAATGCC
CGACAACAGCATTTCAAACTCGAATCGGGGGAATGGCTTTGACAGAAATGCTGAAACATCATCC
TTAGCATTTAAGCCAACAAAGCAGCTGATGCCCTCTGAGCAGCAAAGGAAATTCAGCAGCCAGT
CCAGTAGGGCTCTGACCCCTCCTTCCTATAGTACTGCTAAAAATTCATTGGGATCAAGATCGAG
TGAATCCTTTGGGAAGTATACGTCGCCAGTCATGAGTGAGCACGGGGACGACCATCGGCAGCTC
CTCGCTCATCCAATACAAGGTCCGGGACTCCGTGCAGCTACCTCATCCAACCACTCCGTGGACG
AGCAACTGAAGAATACTGACACGCACCTCATTGACCTGGTCACCAATGAGATCATCACCCAAGG
ACCTCCTGTGGACTGGAGCGACATAGCTGGTCTTGACCTGGTGAAGGCGGTTATTAAGGAGGAG
GTTTTGTGGCCAGTGTTGAGGTCAGATGCGTTCAGTGGGCTGACAGCCTTACCTAGGAGCATCC
TTCTCTTTGGACCTCGGGGTACAGGCAAAACACTATTGGGCAGATGCATAGCCAGTCAGCTGGG
GGCCACGTTTTTCAAAATTGCTGGTTCCGGACTCGTTGCAAAGTGGCTAGGAGAAGCGGAGAAA
ATTATCCACGCCTCTTTTCTTGTGGCCAGGTGTCGCCAGCCCTCGGTGATTTTTGTTAGTGACA
TTGACATGCTTCTCTCCTCTCAAGTGAGTGAGGAACACAGTCCAGTGAGTCGGATGAGAACCGA
ATTTCTGATGCAGCTGGACACTGTACTGACTTCGGCTGAGGACCAAATCGTAGTCATTTGTGCC
ACCAGTAAACCAGAAGAAATAGACGAATCTCTCCGGAGGTACTTCATGAAAAGACTTTTAATCC
CACTTCCTGACAGCACAGCGAGGCACCAGATAATAGTACAACTGCTCTCACAGCACAATTACTG
TCTCAATGACAAGGAGTTTGCACTGCTCGTCCAGCGCACAGAAGGCTTTTCTGGACTAGACGTG
GCTCATTTGTGCCAGGAAGCAGCAGTGGGTCCTCTCCATGCTATGCCAGCTACAGACCTTTCAG
CCATTATGCCCAGCCAGTTAAGGCCCATTACATATCAAGACTTTGAAAATGCATTCTGCAAGAT
TCAGCCTAGCATATCTCAAAAAGAGCTTGATATGTATGTTGAATGGAACAAAATGTTTGGTTGC
AGTCAGTGATAACATCTTTAAAAAAATGTAATGAATGTTGGCACACACATAAAACCTGCTCCAT
AGGGAATAGAGCCCCTTTCCAGTAGTGTTTCAATGGCTAAGGGTACTGGGGAAGACAACGATTA
TGTTGCATCTTTAGAGTCAGGGGTAGCTTTGGAGGAAGCAGGCCTCAGATGAGAGCCTGTGATT
TGGAAGCCCCAGCTGACAGAAAGCATATACAATGTGGATGCTCAGATCGGTTCAAGCTAGACAA
CGCTCACCGAGAAGCAAGGTGCAAGCGTGTTGATTTCAGAAGGACATGAACCTCGTGTGTTGAT
TCCATTCTGCTGTTCTCGAGATTTAGTTGCTGTCAAGTGCCTGGAGTGGTACTTTATTTTTTTG
TTTGCCTCACAATTACATTGGTGGCATGTGCTAATATAAAGAGCTTTAACTTCAAACATTATTG
GACTAAAGAGATGAACGGTTGTGTTACAACAGAAAACCAGATTTTTTTGGCCATTTTAAGAGCA
ACAGTATTCCTCAATCCTGTCTGTTCTGCAGTGTTAGCTAAGAACAGGTAAAACAGGGAACGGT
AATCTGGACCTTAATTTCTGCAGTTCATTTCTTTTAATGTTCTTGTCTGCAAAAACTCAGGAAA
GTGATTGTGATTTGTACAGTACCTCAAAGGATGTGTTAAAAGCACTATGTACTGCTGAGAGTAA
TAGGGTAGGCTTCAATGTTACTTTATATTAAAATGTATGTTTACCTCAACAATTGGAGAATAGC
AAGGAAAATTACTTTGAATGTATCCAGAAAAGAAAAGAAAAATACTGAAGGTGTGATACAACTG
AATATTTAAGGTTTAAAAGTAGAGGTGGAAGGATTTTTTTTTAAAAGTTTCTTACTAATTATGG
GGAATTATTAACCAGAGCAGAACAGTTACTGAAGAGTTTCTTGATT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099954	(Get FASTA)	NCBI Sequence Viewer
	XP_008760110	(Get FASTA)	NCBI Sequence Viewer
	XP_008760111	(Get FASTA)	NCBI Sequence Viewer
	XP_008760112	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79015	(Get FASTA)	NCBI Sequence Viewer
	EDL79016	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099954 ⟸ NM_001106484

- UniProtKB:

D3ZYS4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MISSTSVYGLKMQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTA
SNLLKKYAEKYSGILEGPVDRPVLSNYSDTPSGLVNGRKNDSEPWQSSLNSEAVYPMNCVPDVI
TASKAGVSSALPPVDVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGS
YLHSTYSSQPTPALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQT
AVGSGYSPGGAPPPPSAYLPSGIPAPTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKA
FYMAGQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNSNRGNGFDRNAETSSLAFKPTKQLMP
SEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFGKYTSPVMSEHGDDHRQLLAHPIQGPGLR
AATSSNHSVDEQLKNTDTHLIDLVTNEIITQGPPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAF
SGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARC
RQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESL
RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGP
LHAMPATDLSAIMPSQLRPITYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ

hide sequence

RefSeq Acc Id:	XP_008760112 ⟸ XM_008761890
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZRP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTASNLLKKYAEKY SGILEGPVDRPVLSNYSDTPSGLVNGRKNDSEPWQSSLNSEAVYPMNCVPDVITASKAGVSSAL PPVDVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGSYLHSTYSSQPT PALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGSGYSPGGA PPPPSAYLPSGIPAPTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKAFYMAGQGDMDS SYGNYSYGQQRSTQSPMYRMPDNSISNSNRGNGFDRNAETSSLAFKPTKQLMPSEQQRKFSSQS SRALTPPSYSTAKNSLGSRSSESFGKYTSPVMSEHGDDHRQLLAHPIQGPGLRAATSSNHSVDE QLKNTDTHLIDLVTNEIITQGPPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSIL LFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDI DMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIP LPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSA IMPSQLRPITYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ hide sequence

RefSeq Acc Id:	XP_008760110 ⟸ XM_008761888
- Peptide Label:	isoform X1
- UniProtKB:	D3ZYS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISSTSVYGLKMQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTA SNLLKKYAEKYSGILEGPVDRPVLSNYSDTPSGLVNGRKNDSEPWQSSLNSEAVYPMNCVPDVI TASKAGVSSALPPVDVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGS YLHSTYSSQPTPALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQT AVGSGYSPGGAPPPPSAYLPSGIPAPTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKA FYMAGQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNSNRGNGFDRNAETSSLAFKPTKQLMP SEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFGKYTSPVMSEHGDDHRQLLAHPIQGPGLR AATSSNHSVDEQLKNTDTHLIDLVTNEIITQGPPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAF SGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARC RQPSVIFVSDIDMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESL RRYFMKRLLIPLPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGP LHAMPATDLSAIMPSQLRPITYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ hide sequence

RefSeq Acc Id:	XP_008760111 ⟸ XM_008761889
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZRP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQWTPEHAQWPEQHFDITSTTRSPAHKVEAYRGHLQRTYQYAWANDDISALTASNLLKKYAEKY SGILEGPVDRPVLSNYSDTPSGLVNGRKNDSEPWQSSLNSEAVYPMNCVPDVITASKAGVSSAL PPVDVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQEYAPGYNGSYLHSTYSSQPT PALPSPHPSPLHSSGLLQPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGSGYSPGGA PPPPSAYLPSGIPAPTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKAFYMAGQGDMDS SYGNYSYGQQRSTQSPMYRMPDNSISNSNRGNGFDRNAETSSLAFKPTKQLMPSEQQRKFSSQS SRALTPPSYSTAKNSLGSRSSESFGKYTSPVMSEHGDDHRQLLAHPIQGPGLRAATSSNHSVDE QLKNTDTHLIDLVTNEIITQGPPVDWSDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSIL LFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDI DMLLSSQVSEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIP LPDSTARHQIIVQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSA IMPSQLRPITYQDFENAFCKIQPSISQKELDMYVEWNKMFGCSQ hide sequence

RefSeq Acc Id:

ENSRNOP00000006175 ⟸ ENSRNOT00000006175

RefSeq Acc Id:

ENSRNOP00000081312 ⟸ ENSRNOT00000107158

Protein Domains

AAA+ ATPase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYS4-F1-model_v2	AlphaFold	D3ZYS4	1-759	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308174	AgrOrtholog
BioCyc Gene	G2FUF-49572	BioCyc
Ensembl Genes	ENSRNOG00000004679	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006175	ENTREZGENE
	ENSRNOP00000006175.4	UniProtKB/TrEMBL
	ENSRNOP00000081312	ENTREZGENE
	ENSRNOP00000081312.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006175	ENTREZGENE
	ENSRNOT00000006175.7	UniProtKB/TrEMBL
	ENSRNOT00000107158	ENTREZGENE
	ENSRNOT00000107158.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.60	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	ATPase_AAA+_core	UniProtKB/TrEMBL
	ATPase_AAA_core	UniProtKB/TrEMBL
	ATPase_AAA_CS	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Vps4_C	UniProtKB/TrEMBL
KEGG Report	rno:295649	UniProtKB/TrEMBL
NCBI Gene	295649	ENTREZGENE
PANTHER	AAA DOMAIN-CONTAINING	UniProtKB/TrEMBL
	FIDGETIN	UniProtKB/TrEMBL
Pfam	AAA	UniProtKB/TrEMBL
	Vps4_C	UniProtKB/TrEMBL
PhenoGen	Fign	PhenoGen
PROSITE	AAA	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5ZRP0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYS4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-01	Fign	fidgetin, microtubule severing factor	Fign	fidgetin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Fign	fidgetin	Fign_predicted	fidgetin (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Fign_predicted	fidgetin (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar