Csrnp3 (cysteine and serine rich nuclear protein 3) - Rat Genome Database

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Gene: Csrnp3 (cysteine and serine rich nuclear protein 3) Rattus norvegicus
Analyze
Symbol: Csrnp3
Name: cysteine and serine rich nuclear protein 3
RGD ID: 1306214
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of apoptotic process and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human CSRNP3 (cysteine and serine rich nuclear protein 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Csnrp3; cysteine-serine-rich nuclear protein 3; cysteine/serine-rich nuclear protein 3; LOC311093; RGD1306214; similar to TGF-beta induced apotosis protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,906,587 - 71,102,596 (+)NCBIGRCr8
mRatBN7.2350,498,379 - 50,695,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,849,858 - 54,029,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,433,474 - 62,612,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,209,518 - 60,388,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,883,559 - 52,120,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,517,979 - 58,753,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,877,014 - 47,972,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,773,070 - 47,870,041 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17726538   PMID:18291095   PMID:19389623  


Genomics

Comparative Map Data
Csrnp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,906,587 - 71,102,596 (+)NCBIGRCr8
mRatBN7.2350,498,379 - 50,695,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,849,858 - 54,029,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,433,474 - 62,612,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,209,518 - 60,388,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,883,559 - 52,120,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,517,979 - 58,753,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,877,014 - 47,972,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,773,070 - 47,870,041 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBICelera
Cytogenetic Map3q21NCBI
CSRNP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,469,698 - 165,689,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,469,647 - 165,689,407 (+)EnsemblGRCh38hg38GRCh38
GRCh372166,326,208 - 166,545,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,137,136 - 166,245,458 (+)NCBINCBI36Build 36hg18NCBI36
Celera2159,936,725 - 160,155,865 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,208,131 - 158,427,753 (+)NCBIHuRef
CHM1_12166,331,798 - 166,552,214 (+)NCBICHM1_1
T2T-CHM13v2.02165,926,990 - 166,146,740 (+)NCBIT2T-CHM13v2.0
Csrnp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,675,628 - 65,866,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,676,111 - 65,861,890 (+)EnsemblGRCm39 Ensembl
GRCm38265,845,284 - 66,036,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37265,683,824 - 65,869,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,646,681 - 65,824,298 (+)NCBIMGSCv36mm8
Celera267,525,836 - 67,711,310 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.79NCBI
Csrnp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,460,577 - 8,635,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,450,292 - 8,635,393 (-)NCBIChiLan1.0ChiLan1.0
CSRNP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,130,375 - 68,348,373 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,145,368 - 68,363,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B52,744,717 - 52,962,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,103,604 - 170,311,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,122,687 - 170,311,348 (+)Ensemblpanpan1.1panPan2
CSRNP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,664,555 - 10,863,366 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,664,365 - 10,850,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3610,809,377 - 10,998,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03610,798,782 - 10,988,138 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3610,815,759 - 10,988,367 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13610,880,583 - 11,069,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03610,852,565 - 11,042,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03610,965,349 - 11,154,675 (+)NCBIUU_Cfam_GSD_1.0
Csrnp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303127,844,785 - 127,988,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,631,182 - 13,770,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,628,830 - 13,808,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,141,621 - 72,233,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,040,854 - 72,242,269 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,471,002 - 80,672,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSRNP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11050,967,138 - 51,184,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,073,480 - 51,182,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,332,089 - 148,543,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csrnp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csrnp3
1025 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:101
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000007197
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat

Markers in Region
D3Rat43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,534,264 - 50,534,572 (+)MAPPERmRatBN7.2
Rnor_6.0351,919,538 - 51,919,845NCBIRnor6.0
Rnor_5.0358,554,011 - 58,554,318UniSTSRnor5.0
RGSC_v3.4347,821,523 - 47,821,830UniSTSRGSC3.4
RGSC_v3.4347,821,522 - 47,821,830RGDRGSC3.4
RGSC_v3.1347,717,895 - 47,718,202RGD
Celera350,127,223 - 50,127,530UniSTS
RH 3.4 Map3622.5RGD
RH 3.4 Map3622.5UniSTS
RH 2.0 Map3401.2RGD
SHRSP x BN Map335.0198RGD
Cytogenetic Map3q21UniSTS
AU046972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,531,350 - 50,531,440 (+)MAPPERmRatBN7.2
mRatBN7.2350,530,114 - 50,531,440 (+)MAPPERmRatBN7.2
Rnor_6.0351,916,624 - 51,916,713NCBIRnor6.0
Rnor_6.0351,915,388 - 51,916,713NCBIRnor6.0
Rnor_5.0358,551,097 - 58,551,186UniSTSRnor5.0
Rnor_5.0358,549,861 - 58,551,186UniSTSRnor5.0
RGSC_v3.4347,818,609 - 47,818,698UniSTSRGSC3.4
RGSC_v3.4347,817,373 - 47,818,698UniSTSRGSC3.4
Celera350,123,073 - 50,124,398UniSTS
Celera350,124,309 - 50,124,398UniSTS
Cytogenetic Map3q21UniSTS
AU046874  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21620,314,057 - 20,314,228 (+)MAPPERmRatBN7.2
mRatBN7.21620,314,057 - 20,314,228 (-)MAPPERmRatBN7.2
Rnor_6.01621,916,738 - 21,916,908NCBIRnor6.0
Rnor_6.0352,067,014 - 52,067,184NCBIRnor6.0
Rnor_5.01621,829,705 - 21,829,875UniSTSRnor5.0
Rnor_5.0358,700,774 - 58,700,944UniSTSRnor5.0
Celera1620,116,859 - 20,117,037UniSTS
Cytogenetic Map3q21UniSTS
AU049744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21620,344,700 - 20,344,872 (-)MAPPERmRatBN7.2
mRatBN7.21620,344,700 - 20,344,872 (+)MAPPERmRatBN7.2
mRatBN7.21620,134,574 - 20,134,742 (-)MAPPERmRatBN7.2
Rnor_6.0352,048,683 - 52,048,852NCBIRnor6.0
Rnor_6.01621,884,634 - 21,884,801NCBIRnor6.0
Rnor_5.0358,681,470 - 58,681,639UniSTSRnor5.0
Rnor_5.01621,797,504 - 21,797,671UniSTSRnor5.0
Cytogenetic Map3q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 58 2
Low 1 18 17 9 7 9 1 1 16 35 39 11 1
Below cutoff 2 18 40 32 12 32 7 9 7

Sequence


RefSeq Acc Id: ENSRNOT00000007197   ⟹   ENSRNOP00000007197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)Ensembl
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)Ensembl
RefSeq Acc Id: NM_001271225   ⟹   NP_001258154
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8370,906,686 - 71,094,008 (+)NCBI
mRatBN7.2350,498,633 - 50,685,950 (+)NCBI
Rnor_6.0351,883,559 - 52,120,290 (+)NCBI
Rnor_5.0358,517,979 - 58,753,059 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104837   ⟹   XP_038960765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8371,014,229 - 71,102,596 (+)NCBI
mRatBN7.2350,533,529 - 50,695,598 (+)NCBI
RefSeq Acc Id: XM_039104838   ⟹   XP_038960766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8370,906,587 - 71,102,596 (+)NCBI
mRatBN7.2350,498,379 - 50,695,598 (+)NCBI
RefSeq Acc Id: XM_039104839   ⟹   XP_038960767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8370,916,849 - 71,102,596 (+)NCBI
mRatBN7.2350,508,675 - 50,695,598 (+)NCBI
RefSeq Acc Id: XM_039104840   ⟹   XP_038960768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8370,998,389 - 71,102,596 (+)NCBI
mRatBN7.2350,588,493 - 50,695,598 (+)NCBI
RefSeq Acc Id: NP_001258154   ⟸   NM_001271225
- UniProtKB: D4AE74 (UniProtKB/TrEMBL),   A6HLX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007197   ⟸   ENSRNOT00000007197
RefSeq Acc Id: XP_038960766   ⟸   XM_039104838
- Peptide Label: isoform X2
- UniProtKB: D4AE74 (UniProtKB/TrEMBL),   A6HLX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960767   ⟸   XM_039104839
- Peptide Label: isoform X2
- UniProtKB: D4AE74 (UniProtKB/TrEMBL),   A6HLX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960765   ⟸   XM_039104837
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960768   ⟸   XM_039104840
- Peptide Label: isoform X3
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306214 AgrOrtholog
BioCyc Gene G2FUF-49551 BioCyc
Ensembl Genes ENSRNOG00000005359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007197 ENTREZGENE
  ENSRNOT00000007197.8 UniProtKB/TrEMBL
InterPro CSRNP_N UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
KEGG Report rno:311093 UniProtKB/TrEMBL
NCBI Gene 311093 ENTREZGENE
PANTHER Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
  CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 3 UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/TrEMBL
PhenoGen Csrnp3 PhenoGen
PRINTS CYSSERRICHNP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005359 RatGTEx
UniProt A6HLX7 ENTREZGENE, UniProtKB/TrEMBL
  D4AE74 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Csrnp3  cysteine and serine rich nuclear protein 3  Csrnp3  cysteine-serine-rich nuclear protein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-27 Csrnp3  cysteine-serine-rich nuclear protein 3  Csnrp3  cysteine-serine-rich nuclear protein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Csnrp3  cysteine-serine-rich nuclear protein 3  RGD1306214_predicted  similar to TGF-beta induced apotosis protein 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306214_predicted  similar to TGF-beta induced apotosis protein 2 (predicted)  LOC311093_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311093_predicted  similar to TGF-beta induced apotosis protein 2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL