RH94610 Marker Search Result - Rat Genome Database

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Marker: RH94610

Symbol: RH94610
Previously known as: Scn2a1; X03639; 
RGD ID: 5051705
Expected Size: 170 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,435,631 - 50,435,801 (+)MAPPERmRatBN7.2
Rnor_6.0351,820,428 - 51,820,597NCBIRnor6.0
Rnor_5.0358,455,078 - 58,455,247UniSTSRnor5.0
RGSC_v3.4347,721,220 - 47,721,389UniSTSRGSC3.4
Celera350,028,822 - 50,028,991UniSTS
RH 3.4 Map3613.5UniSTS
Cytogenetic Map3q24UniSTS
Is Marker For: Genes:   Scn2a  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CCACAACCATCAAAAAGAGTTG
Reverse Primer TGTTATAGTCATGCTGTCAGGACTC
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
3632Scn2asodium voltage-gated channel alpha subunit 235030278150437504Rat
RefSeq Transcripts NM_012647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide M22254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 48 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat

1 to 10 of 48 rows


Database
Acc Id
Source(s)
NCBI Gene 24766 UniSTS