Rprm (reprimo, TP53 dependent G2 arrest mediator homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rprm (reprimo, TP53 dependent G2 arrest mediator homolog) Rattus norvegicus
Analyze
Symbol: Rprm
Name: reprimo, TP53 dependent G2 arrest mediator homolog
RGD ID: 1595512
Description: Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human RPRM (reprimo, TP53 dependent G2 arrest mediator homolog); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: candidate mediator of the p53-dependent G2 arrest; MGC109515; protein reprimo; reprimo, TP53 dependent G2 arrest mediator candidate
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8358,948,618 - 58,950,035 (-)NCBIGRCr8
mRatBN7.2338,539,581 - 38,540,998 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl338,539,581 - 38,540,998 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx341,889,827 - 41,891,244 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0350,474,659 - 50,476,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0348,259,479 - 48,260,896 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0339,595,301 - 39,596,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl339,595,301 - 39,596,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0344,691,127 - 44,692,544 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4335,590,166 - 35,591,583 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera336,675,136 - 36,676,553 (-)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-naringenin  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-acetamidofluorene  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
butanal  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP)
coumestrol  (ISO)
diazinon  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
furan  (EXP)
GW 4064  (ISO)
hexane  (EXP)
iron(III) nitrilotriacetate  (EXP)
maneb  (ISO)
mercury dibromide  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methylmercury chloride  (ISO)
mifepristone  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (EXP)
nevirapine  (EXP)
ochratoxin A  (EXP)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentanal  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
streptozocin  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10930422   PMID:12477932  


Genomics

Comparative Map Data
Rprm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8358,948,618 - 58,950,035 (-)NCBIGRCr8
mRatBN7.2338,539,581 - 38,540,998 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl338,539,581 - 38,540,998 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx341,889,827 - 41,891,244 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0350,474,659 - 50,476,076 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0348,259,479 - 48,260,896 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0339,595,301 - 39,596,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl339,595,301 - 39,596,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0344,691,127 - 44,692,544 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4335,590,166 - 35,591,583 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera336,675,136 - 36,676,553 (-)NCBICelera
Cytogenetic Map3q12NCBI
RPRM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382153,477,338 - 153,478,762 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2153,477,338 - 153,478,762 (-)EnsemblGRCh38hg38GRCh38
GRCh372154,333,852 - 154,335,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362154,042,098 - 154,043,568 (-)NCBINCBI36Build 36hg18NCBI36
Build 342154,159,359 - 154,160,830NCBI
Celera2147,948,311 - 147,949,781 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2146,220,733 - 146,222,203 (-)NCBIHuRef
CHM1_12154,339,787 - 154,341,257 (-)NCBICHM1_1
T2T-CHM13v2.02153,929,892 - 153,931,316 (-)NCBIT2T-CHM13v2.0
Rprm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39253,974,105 - 53,975,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl253,974,105 - 53,975,564 (-)EnsemblGRCm39 Ensembl
GRCm38254,084,093 - 54,085,552 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl254,084,093 - 54,085,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv37253,936,504 - 53,937,963 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36253,899,479 - 53,900,938 (-)NCBIMGSCv36mm8
Celera255,823,429 - 55,824,888 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.69NCBI
RPRM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21356,159,632 - 56,161,056 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B56,174,610 - 56,176,034 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B40,772,338 - 40,773,805 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B158,008,875 - 158,010,364 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B158,009,772 - 158,010,101 (-)Ensemblpanpan1.1panPan2
RPRM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha36417,673 - 418,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.036398,084 - 398,494 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.136404,013 - 404,423 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.036466,787 - 467,197 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.036480,488 - 480,898 (-)NCBIUU_Cfam_GSD_1.0
Rprm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303117,302,404 - 117,303,962 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646924,314,105 - 24,314,434 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646924,313,850 - 24,315,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPRM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1561,140,688 - 61,142,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11561,140,687 - 61,143,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21568,110,736 - 68,112,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPRM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11038,863,940 - 38,865,912 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1038,864,844 - 38,865,170 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040160,678,631 - 160,681,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rprm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473212,540,610 - 12,540,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473212,540,265 - 12,541,118 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rprm
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:94
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000006784
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)32749462144188411Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)32749462150302886Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)32749462150302886Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)32749462150302886Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)32749462150302886Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat

Markers in Region
D3Got176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2338,539,303 - 38,539,466 (+)MAPPERmRatBN7.2
Rnor_6.0339,595,024 - 39,595,186NCBIRnor6.0
Rnor_5.0344,690,850 - 44,691,012UniSTSRnor5.0
RGSC_v3.4335,589,853 - 35,590,086RGDRGSC3.4
RGSC_v3.4335,589,889 - 35,590,051UniSTSRGSC3.4
RGSC_v3.1335,486,261 - 35,486,423RGD
Celera336,674,861 - 36,675,021UniSTS
RH 3.4 Map3481.5UniSTS
RH 3.4 Map3481.5RGD
Cytogenetic Map3q12UniSTS
RH143972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2338,539,674 - 38,539,802 (+)MAPPERmRatBN7.2
Rnor_6.0339,595,395 - 39,595,522NCBIRnor6.0
Rnor_5.0344,691,221 - 44,691,348UniSTSRnor5.0
RGSC_v3.4335,590,260 - 35,590,387UniSTSRGSC3.4
Celera336,675,230 - 36,675,357UniSTS
RH 3.4 Map3486.1UniSTS
Cytogenetic Map3q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 31 113 91 90 59 25 59 6 196 77 93 45 59 31

Sequence


Ensembl Acc Id: ENSRNOT00000006784   ⟹   ENSRNOP00000006784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl338,539,581 - 38,540,998 (-)Ensembl
Rnor_6.0 Ensembl339,595,301 - 39,596,718 (-)Ensembl
RefSeq Acc Id: NM_001044276   ⟹   NP_001037741
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8358,948,618 - 58,950,035 (-)NCBI
mRatBN7.2338,539,581 - 38,540,998 (-)NCBI
Rnor_6.0339,595,301 - 39,596,718 (-)NCBI
Rnor_5.0344,691,127 - 44,692,544 (-)NCBI
RGSC_v3.4335,590,166 - 35,591,583 (-)RGD
Celera336,675,136 - 36,676,553 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001037741 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91400 (Get FASTA)   NCBI Sequence Viewer  
  EDM00425 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006784.1
  ENSRNOP00055001915
  ENSRNOP00060013265
  ENSRNOP00065011990
GenBank Protein Q5BJN9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001037741   ⟸   NM_001044276
- UniProtKB: Q5BJN9 (UniProtKB/Swiss-Prot),   A6JF35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006784   ⟸   ENSRNOT00000006784

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJN9-F1-model_v2 AlphaFold Q5BJN9 1-109 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692080
Promoter ID:EPDNEW_R2605
Type:single initiation site
Name:Rprm_1
Description:reprimo, TP53 dependent G2 arrest mediator homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0339,596,741 - 39,596,801EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595512 AgrOrtholog
BioCyc Gene G2FUF-49700 BioCyc
Ensembl Genes ENSRNOG00000005109 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055001587 UniProtKB/Swiss-Prot
  ENSRNOG00060010095 UniProtKB/Swiss-Prot
  ENSRNOG00065009855 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006784.4 UniProtKB/Swiss-Prot
  ENSRNOT00055002540 UniProtKB/Swiss-Prot
  ENSRNOT00060017038 UniProtKB/Swiss-Prot
  ENSRNOT00065015840 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7323940 IMAGE-MGC_LOAD
InterPro Reprimo_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:680110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109515 IMAGE-MGC_LOAD
NCBI Gene 680110 ENTREZGENE
PANTHER PROTEIN REPRIMO UniProtKB/TrEMBL
  PROTEIN REPRIMO-RELATED UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  PTHR28649:SF2 UniProtKB/Swiss-Prot
PhenoGen Rprm PhenoGen
RatGTEx ENSRNOG00000005109 RatGTEx
  ENSRNOG00055001587 RatGTEx
  ENSRNOG00060010095 RatGTEx
  ENSRNOG00065009855 RatGTEx
UniProt A6JF35 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJN9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Rprm  reprimo, TP53 dependent G2 arrest mediator homolog  Rprm  reprimo, TP53 dependent G2 arrest mediator candidate  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Rprm  reprimo, TP53 dependent G2 arrest mediator candidate  Rprm  candidate mediator of the p53-dependent G2 arrest  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 Rprm  candidate mediator of the p53-dependent G2 arrest      Symbol and Name status set to provisional 70820 PROVISIONAL