Mtch2 (mitochondrial carrier 2) - Rat Genome Database

Name: Mtch2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Mtch2 (mitochondrial carrier 2) Rattus norvegicus

Analyze

Symbol:

Mtch2

Name:

mitochondrial carrier 2

RGD ID:

1308080

Description:

Predicted to be involved in several processes, including hematopoietic stem cell homeostasis; mitochondrial membrane organization; and positive regulation of apoptotic process. Predicted to localize to mitochondrial outer membrane. Orthologous to human MTCH2 (mitochondrial carrier 2); INTERACTS WITH (+)-schisandrin B; 3H-1,2-dithiole-3-thione; acetamide.

Type:

protein-coding

RefSeq Status:

REVIEWED

Also known as:

Hspc032; LOC295922; mitochondrial carrier homolog 2; mitochondrial carrier homolog 2 (C. elegans)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MTCH2 (mitochondrial carrier 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Mtch2 (mitochondrial carrier 2)	HGNC	NCBI, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mtch2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MTCH2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MTCH2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mtch2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MTCH2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mtch2 (mitochondrial carrier 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MTCH2 (mitochondrial carrier 2)	Alliance	DIOPT (HGNC)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	76,830,549 - 76,850,189 (+)	NCBI
Rnor_6.0 Ensembl	3	79,678,201 - 79,694,006 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	79,678,141 - 79,695,356 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	86,385,047 - 86,404,836 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	75,210,002 - 75,230,282 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	75,092,877 - 75,126,646 (+)	NCBI
Celera	3	76,039,634 - 76,059,248 (+)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

obesity (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-carotene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

doxorubicin (EXP,ISO)

elemental selenium (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gamma-hexachlorocyclohexane (EXP)

isoprenaline (ISO)

isotretinoin (ISO)

methapyrilene (EXP)

N-methyl-4-phenylpyridinium (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

selenium atom (ISO)

sodium fluoride (ISO)

Soman (EXP)

tetrachloromethane (EXP)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to radiation (ISO)

establishment of protein localization to mitochondrial membrane involved in mitochondrial fission (ISO)

hematopoietic stem cell homeostasis (ISO)

hematopoietic stem cell migration (ISO)

hepatocyte apoptotic process (ISO)

lactate metabolic process (ISO)

mitochondrial ATP synthesis coupled electron transport (ISO)

negative regulation of glycolytic process (ISO)

negative regulation of mitochondrial membrane potential (ISO)

positive regulation of apoptotic process (IBA)

positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (ISO)

positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

protein localization to mitochondrion (ISO)

regulation of mitochondrial membrane permeability involved in apoptotic process (ISO)

Cellular Component

integral component of membrane (IEA)

membrane (IBA)

mitochondrial outer membrane (ISO)

mitochondrion (IBA)

Molecular Function

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	RGD automated data pipeline
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:11726686	PMID:12477932	PMID:12865426	PMID:15899861	PMID:18614015	PMID:19946888	PMID:20436477	PMID:21630459	PMID:21700703	PMID:23376485	PMID:23744079
PMID:24949972	PMID:25813787	PMID:26219591

Genomics

Comparative Map Data

Mtch2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	76,830,549 - 76,850,189 (+)	NCBI
Rnor_6.0 Ensembl	3	79,678,201 - 79,694,006 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	3	79,678,141 - 79,695,356 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	86,385,047 - 86,404,836 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	75,210,002 - 75,230,282 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	75,092,877 - 75,126,646 (+)	NCBI
Celera	3	76,039,634 - 76,059,248 (+)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

MTCH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	47,617,315 - 47,642,607 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	47,604,309 - 47,642,597 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	47,638,869 - 47,664,111 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	11	47,638,858 - 47,664,206 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	47,595,446 - 47,620,640 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	11	47,595,443 - 47,620,640	NCBI
Celera	11	47,781,598 - 47,811,486 (-)	NCBI
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	47,340,003 - 47,369,889 (-)	NCBI		HuRef
CHM1_1	11	47,638,107 - 47,663,488 (-)	NCBI		CHM1_1

Mtch2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	90,677,434 - 90,697,154 (+)	NCBI	GRCm39		mm39
GRCm38	2	90,847,090 - 90,866,810 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	90,847,155 - 90,866,810 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	90,687,312 - 90,706,791 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	90,647,994 - 90,667,473 (+)	NCBI			mm8
Celera	2	92,232,045 - 92,251,524 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI

Mtch2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	672,301 - 690,989 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	672,301 - 690,989 (+)	NCBI	ChiLan1.0	ChiLan1.0

MTCH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	48,115,773 - 48,146,312 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	48,115,774 - 48,146,312 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	47,566,884 - 47,596,711 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MTCH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	18	42,023,511 - 42,044,060 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	18	42,023,484 - 42,045,331 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mtch2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936562	1,622,341 - 1,644,191 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTCH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	14,983,154 - 15,005,213 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	14,982,991 - 15,005,214 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	16,159,926 - 16,181,752 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Mtch2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	1,199,367 - 1,218,425 (+)	NCBI

Position Markers

RH142479

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	79,682,202 - 79,682,478	NCBI	Rnor6.0
Rnor_5.0	3	86,389,096 - 86,389,372	UniSTS	Rnor5.0
RGSC_v3.4	3	75,213,957 - 75,214,233	UniSTS	RGSC3.4
Celera	3	76,043,695 - 76,043,971	UniSTS
Cytogenetic Map	3	q24	UniSTS

RH141100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	79,694,992 - 79,695,175	NCBI	Rnor6.0
Rnor_5.0	3	86,404,472 - 86,404,655	UniSTS	Rnor5.0
RGSC_v3.4	3	75,229,918 - 75,230,101	UniSTS	RGSC3.4
Celera	3	76,058,884 - 76,059,067	UniSTS
Cytogenetic Map	3	q24	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	10119318	79772001	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	30114912	123700444	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	30846101	172879276	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	81136227	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33477354	108914061	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	34394121	103141944	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	39248391	140271184	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	40422921	85422921	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	40523593	92654473	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	40523593	92654473	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	43295930	108914061	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	43295930	163640485	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	43295930	163640485	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	45406058	94467785	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	45406058	127023997	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	45406058	177699992	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	48561928	155263151	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	48562146	115249962	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	51821836	124513579	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	51822008	120917851	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	54630948	119830094	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	54630948	119830094	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	54631046	93415673	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	55245276	95176874	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	55245276	95176874	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	55245276	95176874	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	56735995	101735995	Rat
1581568	Rf53	Renal function QTL 53			total urine protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	58204463	170534769	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	61241033	165369047	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	62922868	127023997	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	63049050	92654302	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	66711607	119830094	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	66711607	119830094	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	72672290	127023997	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	72973445	127023997	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	78700444	123700444	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	506
Count of miRNA genes:	262
Interacting mature miRNAs:	340
Transcripts:	ENSRNOT00000011846
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001317330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE112544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP503204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB758525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK366546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK842966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO574650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY311538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY315983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV779017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM085474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM112089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM132670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KF661297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000079709 ⟹ ENSRNOP00000072917

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	79,678,222 - 79,694,006 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087604 ⟹ ENSRNOP00000074292

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	79,678,201 - 79,692,327 (+)	Ensembl

RefSeq Acc Id:

NM_001106488 ⟹ NP_001099958

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	76,830,549 - 76,850,189 (+)	NCBI
Rnor_6.0	3	79,678,141 - 79,695,356 (+)	NCBI
Rnor_5.0	3	86,385,047 - 86,404,836 (+)	NCBI
RGSC_v3.4	3	75,210,002 - 75,230,282 (+)	RGD
Celera	3	76,039,634 - 76,059,248 (+)	NCBI

Sequence:

show sequence

AGCCGGCGCCCCCGACACGTGATCTGGAACCGGCTGTGTCGCTTGGTGACTCCGTCTGTCCGTC
CGTCCGCGGGTGCCATCATGGCGGACGCGGCCAGTCAGGTGCTCCTGGGCTCCGGTCTCACCAT
CCTGTCCCAGCCGCTCATGTACGTGAAAGTGCTCATCCAGGTGGGATATGAGCCTCTTCCTCCA
ACAATAGGACGGAATATTTTTGGGCGACAAGTATATCAGCTTCCTGGCCTCTTTTGCTATGCTC
AGCACATTGCAAGCATCGATGGGAAGCGTGGGCTGTTCACAGGCTTAACTCCAAGACTGTGTTC
AGGAGTCCTTGGAACTGTGGTCCATGGTAAAGTTTTACAGTATTACCAGGAGTGTGAGAAACCT
GAGGACTTAGGATCTGCAAATGTACAAAAAGAATATCCATCCTCCTTTGACCGAGTTATCAAAG
AGACAACTCGAGAGATGATTGCTCGTTCTGCTGCTACCCTCATTACACATCCCTTCCACGTGAT
TACTCTGAGGTCCATGGTACAGTTTATCGGCAGAGAGTCTAAGTACTGCGGACTGTGTGACTCC
ATAGTAACCATCTACCGGGAAGAAGGCATCGTAGGATTTTTTGCGGGCCTCATTCCTCGCCTCC
TAGGTGACATCATTTCTTTGTGGCTGTGTAACTCACTGGCTTATCTCATCAATACCTATGCACT
GGACAGTGGGGTCTCTACCATGAATGAAATGAAAAGTTATTCCCAAGCTGTCACAGGATTCTTT
GCCAGTATGTTGACATATCCCTTTGTGCTTGTATCTAATCTTATGGCTGTTAACAACTGTGGGC
TTGCTGGTGGATCTCCTCCTTACTCCCCAATATATACTTCTTGGATAGATTGCTGGTGCATGCT
ACAAAAAGCGGGAAATATGAGCCGAGGAAACAGCTTGTTTTTCCGGAAGGTTCCTTGTGGGAAG
ACTTACTATTGTGACCTGAGAATGTTAATTTGAAGATGTGGAGCAGGGACAGTGACATTTCTAT
AGTCCCAATGCACAGAATTATGGGAGAGAATGTTGATTTCTATACAGTGGCACGCTTTTTTAAT
AATCATTTAATCTTGGGAAAATGGAGGTGATTGGTGTCTGCTTTTTTGTTCTTTTTCCTAGCAC
AACATCATTTACCACTAGTGTTCCCCAGTAGTTATTTGAAGTGGGGCATTTATTTCTCCAAATT
CTTGTTTTAAACAGAAAACAGACGTATTTTCCTAAATATTAAGCAGGTTGTCATGTAGATTTGA
GTCAGGTTTGTCAAATGAAGAATAGAATTCCAATTAGAAGGAACTAATTCCATAAGAGTTGATA
AATTAAGAAAGGATACCATGTGGGAGTTTATGATTACCTGAGTACATAGATGCTAGAAAGTCAA
CAGCAACCAGCAGTCTACCTCCCACCATGTTTCCAAGCAGTTGACCCATCTTATCTCTTAATGC
TGCTGAGTAACTGTAGCTGTATGCCTTCTGTTACTATAGAAGAGAAAGTTGTCACCACCAACAG
AAAGGTCAGTTACACAGGCTTAAGCAAGATTTGGGGAGAAAATATGATGGCCTTTCACTCCAAA
GAAGCTCTTGACTTCTTGTAGCACAAGAAGCAAACACCGTAGCACAACAGTAGCCCCTCAGTGC
TCAGTGCCCTCCAGCCTCTAAGGTCTGTCTTCACTGCGATTCCATTACTATAAGCTCCTGCTCC
TAAGCATTTGTTTCCTTTTTGTTACTGCAGAAGGTGAGTAGTTTGTTTTCATTTGTGATGATGC
CCTTGAAAAGTGTATCTGTACCTCCTTATCTGGTGACCAGGTTCCTAGGATATTGTCCAGCTCG
CATGTCAGACCCTCAGTGAGGCTTGTTAAAAACACTTACTGGAGGAAAATTCACTTTACAATGA
AAATTCTCAACTCAGGCATTGAGATTCTATTCACTCAGGCCTTTTAACGTCAGGTTAAAATGCT
CGTAAGATGAGAAAGCCCTAAGGTGTCAATTGTTTAAGTAAATTCACTGGTACTTTGCCAAATG
AGTAAGCACTGACTTTGCTGCTTTTAGACTTCTGTCAATGCAGCAGAGGCCATGATGTTAGGTA
GTGTGAGCGAGCAGGGTCTTCTGCTCAGGGTTAGGGAGGGATGCAACCAGAAGCTCATAAGTAG
CTTAGTTTGAAATGTCTTTGATGTCAAAAGTACTTTGTCTCAAAAGTAATGTAAATTTTATATT
CTATTCAATACTATCTGCATCTGTTTTAATATAAAACATGTTTTGCATTACCTACTCTTTTCTC
CCAAAAAAAGGTCAAGTAAAAATGATCTAGGAAAATGCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001317330 ⟹ NP_001304259

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	76,830,549 - 76,850,189 (+)	NCBI
Rnor_6.0	3	79,678,141 - 79,695,356 (+)	NCBI
Celera	3	76,039,634 - 76,059,248 (+)	NCBI

Sequence:

show sequence

AGCCGGCGCCCCCGACACGTGATCTGGAACCGGCTGTGTCGCTTGGTGACTCCGTCTGTCCGTC
CGTCCGCGGGTGCCATCATGGCGGACGCGGCCAGTCAGGTGCTCCTGGGCTCCGGTCTCACCAT
CCTGTCCCAGCCGCTCATGTACGTGAAAGTGCTCATCCAGGTGGGATATGAGCCTCTTCCTCCA
ACAATAGGACGGAATATTTTTGGGCGACAAGTATATCAGCTTCCTGGCCTCTTTTGCTATGCTC
AGCACATTGCAAGCATCGATGGGAAGCGTGGGCTGTTCACAGGCTTAACTCCAAGACTGTGTTC
AGGAGTCCTTGGAACTGTGGTCCATGGTAAAGTTTTACAGTATTACCAGGAGTGTGAGAAACCT
GAGGACTTAGGATCTGCAAATGTACAAAAAGAATATCCATCCTCCTTTGACCGAGTTATCAAAG
AGACAACTCGAGAGATGATTGCTCGTTCTGCTGCTACCCTCATTACACATCCCTTCCACGTGAT
TACTCTGAGGTCCATGGTACAGTTTATCGGCAGAGAGTCTAAGTACTGCGGACTGTGTGACTCC
ATAGTAACCATCTACCGGGAAGAAGGCATCGTAGGATTTTTTGCGGGCCTCATTCCTCGCCTCC
TAGGTGACATCATTTCTTTGTGGCTGTGTAACTCACTGGCTTATCTCATCAATACCTATGCACT
GGACAGTGGGGTCTCTACCATGAATGAAATGAAAAGTTATTCCCAAGCTGTCACAGGATTCTTT
GCCAGTATGTTGACATATCCCTTTGTGCTTGTATCTAATCTTATGGCTGTTAACAACTGTGGGC
TTGCTGGTGGATCTCCTCCTTACTCCCCAATATATACTTCTTGGATAGATTGCTGGTGCATGCT
ACAAAAAGCGGGAAATATGAGCCGAGGAAACAGCTTGTTTTTCCGGAAGGTTCCTTGTGGGAAG
ACTTACTATTGTGACCTGAGAATGTTAATTTGAAGATGTGGAGCAGGGACAGTGACATTTCTAT
AGTCCCAATGCACAGAATTATGGGAGAGAATGTTGATTTCTATACAGTGGCACGCTTTTTTAAT
AATCATTTAATCTTGGGAAAATGGAGGTGATTGGTGTCTGCTTTTTTGTTCTTTTTCCTAGCAC
AACATCATTTACCACTAGTGTTCCCCAGTAGTTATTTGAAGTGGGGCATTTATTTCTCCAAATT
CTTGTTTTAAACAGAAAACAGACGTATTTTCCTAAATATTAAGCAGGTTGTCATGTAGATTTGA
GTCAGGTTTGTCAAATGAAGAATAGAATTCCAATTAGAAGGAACTAATTCCATAAGAGTTGATA
AATTAAGAAAGGATACCATGTGGGAGTTTATGATTACCTGAGTACATAGATGCTAGAAAGTCAA
CAGCAACCAGCAGTCTACCTCCCACCATGTTTCCAAGCAGTTGACCCATCTTATCTCTTAATGC
TGCTGAGTAACTGTAGCTGTATGCCTTCTGTTACTATAGAAGAGAAAGTTGTCACCACCAACAG
AAAGGTCAGTTACACAGGCTTAAGCAAGATTTGGGGAGAAAATATGATGGCCTTTCACTCCAAA
GAAGCTCTTGACTTCTTGTAGCACAAGAAGCAAACACCGTAGCACAACAGTAGCCCCTCAGTGC
TCAGTGCCCTCCAGCCTCTAAGGTCTGTCTTCACTGCGATTCCATTACTATAAGCTCCTGCTCC
TAAGCATTTGTTTCCTTTTTGTTACTGCAGAAGGTGAGTAGTTTGTTTTCATTTGTGATGATGC
CCTTGAAAAGTGTATCTGTACCTCCTTATCTGGTGACCAGGTTCCTAGGATATTGTCCAGCTCG
CATGTCAGACCCTCAGTGAGGCTTGTTAAAAACACTTACTGGAGGAAAATTCACTTTACAATGA
AAATTCTCAACTCAGGCATTGAGATTCTATTCACTCAGGCCTTTTAACGTCAGGTTAAAATGCT
CGTAAGATGAGAAAGCCCTAAGGTGTCAATTGTTTAAGTAAATTCACTGGTACTTTGCCAAATG
AGTAAGCACTGACTTTGCTGCTTTTAGACTTCTGTCAATGCAGCAGAGGCCATGATGTTAGGTA
GTGTGAGCGAGCAGGGTCTTCTGCTCAGGGTTAGGGAGGGATGCAACCAGAAGCTCATAAGTAG
CTTAGTTTGAAATGTCTTTGATGTCAAAAGTACTTTGTCTCAAAAGTAATGTAAATTTTATATT
CTATTCAATACTATCTGCATCTGTTTTAATATAAAACATGTTTTGCATTACCTACTCTTTTCTC
CCAAAAAAAGGTCAAGTAAAAATGATCTAGGAAAATGCAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099958	(Get FASTA)	NCBI Sequence Viewer
	NP_001304259	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58688	(Get FASTA)	NCBI Sequence Viewer
	AHO49121	(Get FASTA)	NCBI Sequence Viewer
	EDL79483	(Get FASTA)	NCBI Sequence Viewer
	EDL79484	(Get FASTA)	NCBI Sequence Viewer
	EDL79485	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001099958 ⟸ NM_001106488
- Peptide Label:	isoform 1
- UniProtKB:	B0BN52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVYQLPGLFCYAQHIASI DGKRGLFTGLTPRLCSGVLGTVVHGKVLQYYQECEKPEDLGSANVQKEYPSSFDRVIKETTREM IARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIVTIYREEGIVGFFAGLIPRLLGDIIS LWLCNSLAYLINTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGSP PYSPIYTSWIDCWCMLQKAGNMSRGNSLFFRKVPCGKTYYCDLRMLI hide sequence

RefSeq Acc Id:	NP_001304259 ⟸ NM_001317330
- Peptide Label:	isoform 1x
- UniProtKB:	B0BN52 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVYQLPGLFCYAQHIASI DGKRGLFTGLTPRLCSGVLGTVVHGKVLQYYQECEKPEDLGSANVQKEYPSSFDRVIKETTREM IARSAATLITHPFHVITLRSMVQFIGRESKYCGLCDSIVTIYREEGIVGFFAGLIPRLLGDIIS LWLCNSLAYLINTYALDSGVSTMNEMKSYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGSP PYSPIYTSWIDCWCMLQKAGNMSRGNSLFFRKVPCGKTYYCDLRMLIXRCGAGTVTFL hide sequence

RefSeq Acc Id:

ENSRNOP00000072917 ⟸ ENSRNOT00000079709

RefSeq Acc Id:

ENSRNOP00000074292 ⟸ ENSRNOT00000087604

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692210

Promoter ID:

EPDNEW_R2723

Type:

initiation region

Name:

Mtch2_1

Description:

mitochondrial carrier 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	79,678,202 - 79,678,262	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308080	AgrOrtholog
Ensembl Genes	ENSRNOG00000058658	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000072917	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000074292	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079709	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000087604	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8375010	IMAGE-MGC_LOAD
InterPro	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom	UniProtKB/TrEMBL
KEGG Report	rno:295922	UniProtKB/TrEMBL
MGC_CLONE	MGC:187702	IMAGE-MGC_LOAD
NCBI Gene	295922	ENTREZGENE
Pfam	Mito_carr	UniProtKB/TrEMBL
PhenoGen	Mtch2	PhenoGen
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	Mitoch_carrier	UniProtKB/TrEMBL
UniProt	A0A0G2K459_RAT	UniProtKB/TrEMBL
	A0A0G2K7P7_RAT	UniProtKB/TrEMBL
	B0BN52	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Mtch2	mitochondrial carrier 2	Mtch2	mitochondrial carrier homolog 2 (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mtch2	mitochondrial carrier homolog 2 (C. elegans)	Mtch2_predicted	mitochondrial carrier homolog 2 (C. elegans) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mtch2_predicted	mitochondrial carrier homolog 2 (C. elegans) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD