D3Rat45 Marker Search Result - Rat Genome Database

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Marker: D3Rat45

Symbol: D3Rat45
Previously known as: R0028-A02; oxsts6972; R028-A02; 
RGD ID: 35947
Expected Size: 174 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0341,510,169 - 41,510,346NCBIRnor6.0
RGSC_v3.4338,709,559 - 38,709,732UniSTSRGSC3.4
RGSC_v3.4338,709,558 - 38,709,732RGDRGSC3.4
RGSC_v3.1338,605,931 - 38,606,104RGD
RH 3.4 Map3536.1UniSTS
RH 3.4 Map3536.1RGD
RH 2.0 Map3281.2RGD
SHRSP x BN Map325.6698RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Bp92   Bw31  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer AGCTCCTACTGGATGGTCGA
Reverse Primer CCAGCCATAATACCAAGACAC
 
Template
CCCACAAATTAGNTAGAGCATGTGCACATGGAGATCTCTCCGACAGTCCTTTCCTTGAGCTTTT
CCTTACAATGCCTTGAAGGAGCATCTTAAAATCCTTGCTGCTGTCTCTGTATGTTCACTTCTGC
AGAGAGCTCCTACTGGATGGTCGAAGTTCTGTTTGGGCAAATTGTTCACAGTGAGTCATAACCT
CCACAGGGACAGGATCTGAACAACTCTTTTTATATCCAAAGATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTCTTGGTATTATGGCTGGTGGGTACCGAGCTCGAATTCGTAATCATGG
TCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAA
GCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTC
ACTGCCCGCTTTCCAGTCGGGAAACTGTCGTGCCAGCTGCATTAATGAATCGGCCACGGCGGGG
AGAGCGGTTGCGTATTGCNCGCAGGGTGGTTTTCTNTCACAGTGANAGGCAACANTGATTGNCT
NNACGCTGGCNGAAGAGTGCACAGNGTCCGTGGTTGNCCACAGGAATCTGNTGATGTGTCGANC
GNAATCCTATANCAANA

Region

Nucleotide Sequences


Additional Information

Database Acc Id Source(s)
NCBI Gene 369137 UniSTS
  544482 UniSTS
UniSTS 121864 UniSTS