Agbl2 (AGBL carboxypeptidase 2) - Rat Genome Database

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Gene: Agbl2 (AGBL carboxypeptidase 2) Rattus norvegicus
Analyze
Symbol: Agbl2
Name: AGBL carboxypeptidase 2
RGD ID: 1306827
Description: Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in protein side chain deglutamylation. Predicted to be located in centriole; ciliary basal body; and cytosol. Orthologous to human AGBL2 (AGBL carboxypeptidase 2); INTERACTS WITH bisphenol A; endosulfan; thioacetamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP/GTP binding protein-like 2; cytosolic carboxypeptidase 2; cytosolic carboxypeptidase 2-like; LOC103690183; LOC366124; RGD1306827; similar to CG32627-PB
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2376,764,893 - 76,800,071 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)Ensembl
Rnor_6.0379,622,791 - 79,647,402 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,319,497 - 86,354,972 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,144,314 - 75,178,964 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1375,041,014 - 75,074,718 (+)NCBI
Celera375,973,609 - 76,009,281 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17244818   PMID:23085998   PMID:25103237  


Genomics

Comparative Map Data
Agbl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2376,764,893 - 76,800,071 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)Ensembl
Rnor_6.0379,622,791 - 79,647,402 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,319,497 - 86,354,972 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,144,314 - 75,178,964 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1375,041,014 - 75,074,718 (+)NCBI
Celera375,973,609 - 76,009,281 (+)NCBICelera
Cytogenetic Map3q24NCBI
AGBL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,659,591 - 47,715,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1147,659,591 - 47,715,389 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,681,143 - 47,736,921 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,637,719 - 47,692,878 (-)NCBINCBI36hg18NCBI36
Celera1147,828,422 - 47,883,671 (-)NCBI
Cytogenetic Map11p11.2NCBI
HuRef1147,386,826 - 47,442,523 (-)NCBIHuRef
CHM1_11147,680,423 - 47,736,178 (-)NCBICHM1_1
T2T-CHM13v2.01147,824,574 - 47,880,377 (-)NCBI
Agbl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,613,029 - 90,664,781 (+)NCBIGRCm39mm39
GRCm39 Ensembl290,613,071 - 90,664,781 (+)Ensembl
GRCm38290,782,685 - 90,834,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,782,727 - 90,834,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,622,901 - 90,656,388 (+)NCBIGRCm37mm9NCBIm37
MGSCv36290,583,566 - 90,635,276 (+)NCBImm8
Celera292,167,447 - 92,201,166 (+)NCBICelera
Cytogenetic Map2E1NCBI
AGBL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11148,163,160 - 48,218,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,163,742 - 48,217,869 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01147,613,564 - 47,669,809 (-)NCBIMhudiblu_PPA_v0panPan3
AGBL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,960,085 - 42,003,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,960,912 - 42,002,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,691,514 - 40,734,468 (+)NCBI
ROS_Cfam_1.01842,616,043 - 42,658,721 (+)NCBI
ROS_Cfam_1.0 Ensembl1842,616,217 - 42,658,118 (+)Ensembl
UMICH_Zoey_3.11842,104,209 - 42,141,564 (+)NCBI
UNSW_CanFamBas_1.01841,657,442 - 41,700,277 (+)NCBI
UU_Cfam_GSD_1.01842,387,511 - 42,430,423 (+)NCBI
Agbl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,452,568 - 19,509,105 (+)NCBI
SpeTri2.0NW_0049365621,563,607 - 1,598,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGBL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,933,197 - 14,972,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,933,188 - 14,971,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,111,605 - 16,148,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,602,673 - 17,679,431 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl117,603,105 - 17,676,105 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038114,892,707 - 114,994,829 (+)NCBIVero_WHO_p1.0
Agbl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,177,563 - 1,190,568 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247671,176,417 - 1,191,550 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BG372703  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,763,369 - 76,763,527 (+)MAPPERmRatBN7.2
Rnor_6.0379,610,413 - 79,610,570NCBIRnor6.0
Rnor_5.0386,317,906 - 86,318,063UniSTSRnor5.0
RGSC_v3.4375,141,940 - 75,142,097UniSTSRGSC3.4
Celera375,972,533 - 75,972,690UniSTS
Cytogenetic Map3q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:510
Count of miRNA genes:254
Interacting mature miRNAs:305
Transcripts:ENSRNOT00000011467, ENSRNOT00000038696, ENSRNOT00000066828, ENSRNOT00000067067, ENSRNOT00000067769
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 10 11
Low 1 10 17 4 18 4 2 2 56 35 29 2
Below cutoff 2 33 38 35 1 35 6 7 14 2 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006234540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011467   ⟹   ENSRNOP00000011467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,764,238 - 76,797,348 (+)Ensembl
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109326   ⟹   ENSRNOP00000084139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112284   ⟹   ENSRNOP00000080118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,766,128 - 76,800,214 (+)Ensembl
RefSeq Acc Id: XM_039106792   ⟹   XP_038962720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,766,128 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106793   ⟹   XP_038962721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,764,959 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106794   ⟹   XP_038962722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,764,893 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106795   ⟹   XP_038962723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,766,128 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106796   ⟹   XP_038962724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,766,128 - 76,796,620 (+)NCBI
RefSeq Acc Id: XM_039106797   ⟹   XP_038962725
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,764,959 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106798   ⟹   XP_038962726
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,766,128 - 76,796,620 (+)NCBI
RefSeq Acc Id: XM_039106799   ⟹   XP_038962727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2376,766,128 - 76,794,040 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000011467   ⟸   ENSRNOT00000011467
RefSeq Acc Id: XP_038962722   ⟸   XM_039106794
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962721   ⟸   XM_039106793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962725   ⟸   XM_039106797
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038962723   ⟸   XM_039106795
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962720   ⟸   XM_039106792
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962724   ⟸   XM_039106796
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962726   ⟸   XM_039106798
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038962727   ⟸   XM_039106799
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000080118   ⟸   ENSRNOT00000112284
RefSeq Acc Id: ENSRNOP00000084139   ⟸   ENSRNOT00000109326

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3W7-F1-model_v2 AlphaFold D4A3W7 1-860 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306827 AgrOrtholog
BioCyc Gene G2FUF-48763 BioCyc
Ensembl Genes ENSRNOG00000008467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011467 ENTREZGENE
  ENSRNOP00000011467.7 UniProtKB/TrEMBL
  ENSRNOP00000080118 ENTREZGENE
  ENSRNOP00000080118.1 UniProtKB/TrEMBL
  ENSRNOP00000084139 ENTREZGENE
  ENSRNOP00000084139.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011467 ENTREZGENE
  ENSRNOT00000011467.8 UniProtKB/TrEMBL
  ENSRNOT00000109326 ENTREZGENE
  ENSRNOT00000109326.1 UniProtKB/TrEMBL
  ENSRNOT00000112284 ENTREZGENE
  ENSRNOT00000112284.1 UniProtKB/TrEMBL
InterPro Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene 366124 ENTREZGENE
Pfam Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
PhenoGen Agbl2 PhenoGen
UniProt A0A8I5ZPZ4_RAT UniProtKB/TrEMBL
  A0A8I5ZX61_RAT UniProtKB/TrEMBL
  D4A3W7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Agbl2  AGBL carboxypeptidase 2  LOC103690183  cytosolic carboxypeptidase 2-like  Data Merged 737654 PROVISIONAL
2021-02-18 Agbl2  AGBL carboxypeptidase 2  Agbl2  ATP/GTP binding protein-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690183  cytosolic carboxypeptidase 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Agbl2  ATP/GTP binding protein-like 2   Agbl2_predicted  ATP/GTP binding protein-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Agbl2_predicted  ATP/GTP binding protein-like 2 (predicted)  RGD1306827_predicted  similar to CG32627-PB (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306827_predicted  similar to CG32627-PB (predicted)  LOC366124_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC366124_predicted  similar to CG32627-PB (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL