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Gene: Atg13 (autophagy related 13) Rattus norvegicus
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Symbol: Atg13
Name: autophagy related 13
Description: Predicted to have protein kinase binding activity and protein kinase regulator activity. Predicted to be involved in several processes, including macroautophagy; piecemeal microautophagy of the nucleus; and response to mitochondrial depolarisation. Predicted to localize to the cytoplasm and extrinsic component of membrane. Orthologous to human ATG13 (autophagy related 13); PARTICIPATES IN autophagy pathway; mTOR signaling pathway; INTERACTS WITH bisphenol A; endosulfan; glafenine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ATG13 autophagy related 13 homolog; ATG13 autophagy related 13 homolog (S. cerevisiae); autophagy-related protein 13; Harbi1; Harbi1l; harbinger transposase derived 1; harbinger transposase derived 1-like; LOC362164; RGD1310685; similar to hypothetical protein D2Ertd391e
Orthologs:
Homo sapiens (human) : ATG13 (autophagy related 13)  HGNC  Alliance
Mus musculus (house mouse) : Atg13 (autophagy related 13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atg13 (autophagy related 13)
Pan paniscus (bonobo/pygmy chimpanzee) : ATG13 (autophagy related 13)
Canis lupus familiaris (dog) : ATG13 (autophagy related 13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atg13 (autophagy related 13)
Sus scrofa (pig) : ATG13 (autophagy related 13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0380,580,549 - 80,614,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0387,279,649 - 87,313,654 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,056,642 - 76,090,287 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1375,953,473 - 75,986,537 (-)NCBI
Celera376,851,283 - 76,885,195 (-)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atg13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310685
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.