Celf1 (CUGBP, Elav-like family member 1) - Rat Genome Database

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Gene: Celf1 (CUGBP, Elav-like family member 1) Rattus norvegicus
Analyze
Symbol: Celf1
Name: CUGBP, Elav-like family member 1
RGD ID: 1307721
Description: Enables mRNA 3'-UTR binding activity. Involved in cellular response to polyamine macromolecule; negative regulation of epithelial cell proliferation; and post-transcriptional regulation of gene expression. Acts upstream of or within positive regulation of gene expression. Predicted to be located in cytoplasmic stress granule and nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF1 (CUGBP Elav-like family member 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: bruno-like protein 2; CELF-1; CUG triplet repeat RNA-binding protein 1; CUG triplet repeat, RNA binding protein 1; CUG-BP- and ETR-3-like factor 1; CUG-BP1; CUGBP Elav-like family member 1; Cugbp1; LOC362160; RNA-binding protein BRUNOL-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,380,407 - 97,455,253 (+)NCBIGRCr8
mRatBN7.2376,924,591 - 76,999,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,924,613 - 76,999,426 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,456,901 - 80,474,495 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,055,917 - 89,073,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,906,772 - 86,924,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,768,900 - 79,844,548 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,823,945 - 79,842,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,477,670 - 86,553,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,360,927 - 75,378,582 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,257,298 - 75,274,950 (+)NCBI
Celera376,188,178 - 76,205,831 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3',5'-cyclic UMP  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
acetohydrazide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
finasteride  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
hydrazine  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A positive feedback regulation of Heme oxygenase 1 by CELF1 in cardiac myoblast cells. Liu Y, etal., Biochim Biophys Acta Gene Regul Mech. 2019 Feb;1862(2):209-218. doi: 10.1016/j.bbagrm.2018.11.006. Epub 2018 Nov 30.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Regulation of cyclin-dependent kinase 4 translation through CUG-binding protein 1 and microRNA-222 by polyamines. Xiao L, etal., Mol Biol Cell. 2011 Sep;22(17):3055-69. doi: 10.1091/mbc.E11-01-0069. Epub 2011 Jul 7.
8. CELF1/p53 axis: a sustained antiproliferative signal leading to villus atrophy under total parenteral nutrition. Yan JK, etal., FASEB J. 2019 Mar;33(3):3378-3391. doi: 10.1096/fj.201801695R. Epub 2018 Dec 4.
Additional References at PubMed
PMID:10893231   PMID:11158314   PMID:12477932   PMID:14726956   PMID:15830352   PMID:16754681   PMID:16931514   PMID:16946708   PMID:17130239   PMID:19075228   PMID:19106619   PMID:19946888  
PMID:22072795   PMID:22658674   PMID:22681889   PMID:24625528   PMID:26283512   PMID:26366374   PMID:28763438  


Genomics

Comparative Map Data
Celf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,380,407 - 97,455,253 (+)NCBIGRCr8
mRatBN7.2376,924,591 - 76,999,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,924,613 - 76,999,426 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,456,901 - 80,474,495 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,055,917 - 89,073,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,906,772 - 86,924,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,768,900 - 79,844,548 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,823,945 - 79,842,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,477,670 - 86,553,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,360,927 - 75,378,582 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,257,298 - 75,274,950 (+)NCBI
Celera376,188,178 - 76,205,831 (+)NCBICelera
Cytogenetic Map3q24NCBI
CELF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,465,937 - 47,565,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,465,933 - 47,565,569 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,487,489 - 47,587,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,446,521 - 47,531,264 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,446,521 - 47,472,649NCBI
Celera1147,629,224 - 47,716,566 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,187,464 - 47,274,966 (-)NCBIHuRef
CHM1_11147,486,759 - 47,574,018 (-)NCBICHM1_1
T2T-CHM13v2.01147,625,789 - 47,725,965 (-)NCBIT2T-CHM13v2.0
Celf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,770,604 - 90,849,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,770,727 - 90,849,842 (+)EnsemblGRCm39 Ensembl
GRCm38290,940,259 - 91,019,497 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,940,382 - 91,019,497 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,780,615 - 90,857,212 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,741,297 - 90,817,894 (+)NCBIMGSCv36mm8
Celera292,325,145 - 92,401,546 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.44NCBI
Celf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422742,017 - 817,647 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422742,017 - 817,649 (+)NCBIChiLan1.0ChiLan1.0
CELF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,670,341 - 49,769,748 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,690,101 - 49,789,615 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,415,600 - 47,515,254 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,967,831 - 48,054,437 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,967,831 - 48,008,487 (-)Ensemblpanpan1.1panPan2
CELF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,105,316 - 42,199,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,105,324 - 42,179,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,836,673 - 40,929,905 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,761,777 - 42,855,073 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,761,776 - 42,837,373 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,248,478 - 42,341,677 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,803,324 - 41,896,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,532,815 - 42,626,091 (+)NCBIUU_Cfam_GSD_1.0
Celf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,577,453 - 19,673,643 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,753,088 - 1,785,310 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,699,774 - 1,785,285 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CELF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,066,510 - 15,154,386 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,066,518 - 15,161,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,311,078 - 16,328,018 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CELF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,764,915 - 17,852,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,817,422 - 17,853,783 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,056,967 - 115,148,559 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,263,231 - 1,344,896 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Celf1
200 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:373
Count of miRNA genes:209
Interacting mature miRNAs:271
Transcripts:ENSRNOT00000014484
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat

Markers in Region
RH133857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,994,814 - 76,995,028 (+)MAPPERmRatBN7.2
Rnor_6.0379,839,933 - 79,840,146NCBIRnor6.0
Rnor_5.0386,548,686 - 86,548,899UniSTSRnor5.0
RGSC_v3.4375,376,429 - 75,376,642UniSTSRGSC3.4
Celera376,203,678 - 76,203,891UniSTS
Cytogenetic Map3q24UniSTS
X61451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,992,683 - 76,992,799 (+)MAPPERmRatBN7.2
Rnor_6.0379,837,802 - 79,837,917NCBIRnor6.0
Rnor_5.0386,546,555 - 86,546,670UniSTSRnor5.0
RGSC_v3.4375,374,298 - 75,374,413UniSTSRGSC3.4
Celera376,201,547 - 76,201,662UniSTS
Cytogenetic Map3q24UniSTS
RH125691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,994,961 - 76,995,080 (+)MAPPERmRatBN7.2
Rnor_6.0379,840,080 - 79,840,198NCBIRnor6.0
Rnor_5.0386,548,833 - 86,548,951UniSTSRnor5.0
RGSC_v3.4375,376,576 - 75,376,694UniSTSRGSC3.4
Celera376,203,825 - 76,203,943UniSTS
Cytogenetic Map3q24UniSTS
AA997594  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,997,557 - 76,997,772 (+)MAPPERmRatBN7.2
Rnor_6.0379,842,677 - 79,842,891NCBIRnor6.0
Rnor_5.0386,551,430 - 86,551,644UniSTSRnor5.0
RGSC_v3.4375,379,173 - 75,379,387UniSTSRGSC3.4
Celera376,206,422 - 76,206,636UniSTS
RH 3.4 Map3708.5UniSTS
Cytogenetic Map3q24UniSTS
MARC_11599-11600:1002739035:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,983,581 - 76,984,203 (+)MAPPERmRatBN7.2
Rnor_6.0379,828,209 - 79,828,830NCBIRnor6.0
Rnor_5.0386,536,962 - 86,537,583UniSTSRnor5.0
RGSC_v3.4375,365,196 - 75,365,817UniSTSRGSC3.4
Celera376,192,445 - 76,193,066UniSTS
Cytogenetic Map3q24UniSTS
MARC_7541-7542:996687927:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2376,992,734 - 76,993,233 (+)MAPPERmRatBN7.2
Rnor_6.0379,837,853 - 79,838,351NCBIRnor6.0
Rnor_5.0386,546,606 - 86,547,104UniSTSRnor5.0
RGSC_v3.4375,374,349 - 75,374,847UniSTSRGSC3.4
Celera376,201,598 - 76,202,096UniSTS
Cytogenetic Map3q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 57 41 19 41 8 11 74 35 41 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000014484   ⟹   ENSRNOP00000014484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,924,614 - 76,995,102 (+)Ensembl
Rnor_6.0 Ensembl379,823,945 - 79,842,082 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106910   ⟹   ENSRNOP00000080849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,924,613 - 76,999,170 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109347   ⟹   ENSRNOP00000094511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl376,924,625 - 76,999,426 (+)Ensembl
RefSeq Acc Id: NM_001025421   ⟹   NP_001020592
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,435,136 - 97,452,791 (+)NCBI
mRatBN7.2376,979,313 - 76,996,968 (+)NCBI
Rnor_6.0379,823,945 - 79,842,086 (+)NCBI
Rnor_5.0386,477,670 - 86,553,301 (+)NCBI
RGSC_v3.4375,360,927 - 75,378,582 (+)RGD
Celera376,188,178 - 76,205,831 (+)RGD
Sequence:
RefSeq Acc Id: XM_039105411   ⟹   XP_038961339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
mRatBN7.2376,924,607 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105412   ⟹   XP_038961340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,394,362 - 97,455,253 (+)NCBI
mRatBN7.2376,924,606 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105414   ⟹   XP_038961342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
mRatBN7.2376,924,607 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105415   ⟹   XP_038961343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,431 - 97,455,253 (+)NCBI
mRatBN7.2376,924,609 - 76,999,206 (+)NCBI
RefSeq Acc Id: XM_039105416   ⟹   XP_038961344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
mRatBN7.2376,924,604 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105417   ⟹   XP_038961345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,427 - 97,455,253 (+)NCBI
mRatBN7.2376,924,606 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105419   ⟹   XP_038961347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,427 - 97,455,253 (+)NCBI
mRatBN7.2376,924,606 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105420   ⟹   XP_038961348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
mRatBN7.2376,924,608 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105422   ⟹   XP_038961350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,430,853 - 97,455,253 (+)NCBI
mRatBN7.2376,975,033 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_039105423   ⟹   XP_038961351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,410,500 - 97,455,253 (+)NCBI
mRatBN7.2376,954,678 - 76,999,429 (+)NCBI
RefSeq Acc Id: XM_063284140   ⟹   XP_063140210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,407 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284141   ⟹   XP_063140211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284142   ⟹   XP_063140212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,440 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284144   ⟹   XP_063140214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,380,427 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284145   ⟹   XP_063140215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,423,712 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284146   ⟹   XP_063140216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,392,917 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284147   ⟹   XP_063140217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,430,857 - 97,455,253 (+)NCBI
RefSeq Acc Id: XM_063284149   ⟹   XP_063140219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,430,850 - 97,455,253 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001020592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961345 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961351 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140210 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140211 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140212 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140215 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140216 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140217 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140219 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98012 (Get FASTA)   NCBI Sequence Viewer  
  EDL79496 (Get FASTA)   NCBI Sequence Viewer  
  EDL79497 (Get FASTA)   NCBI Sequence Viewer  
  EDL79498 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014484
  ENSRNOP00000014484.6
  ENSRNOP00000080849.1
  ENSRNOP00000094511
  ENSRNOP00000094511.1
GenBank Protein Q4QQT3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020592   ⟸   NM_001025421
- UniProtKB: Q4QQT3 (UniProtKB/Swiss-Prot),   A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014484   ⟸   ENSRNOT00000014484
RefSeq Acc Id: XP_038961344   ⟸   XM_039105416
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961340   ⟸   XM_039105412
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961345   ⟸   XM_039105417
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961347   ⟸   XM_039105419
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961339   ⟸   XM_039105411
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961342   ⟸   XM_039105414
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961348   ⟸   XM_039105420
- Peptide Label: isoform X5
- UniProtKB: Q4QQT3 (UniProtKB/Swiss-Prot),   A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961343   ⟸   XM_039105415
- Peptide Label: isoform X2
- UniProtKB: A6HN95 (UniProtKB/TrEMBL),   A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961351   ⟸   XM_039105423
- Peptide Label: isoform X5
- UniProtKB: Q4QQT3 (UniProtKB/Swiss-Prot),   A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961350   ⟸   XM_039105422
- Peptide Label: isoform X5
- UniProtKB: Q4QQT3 (UniProtKB/Swiss-Prot),   A0A8I5ZTX3 (UniProtKB/TrEMBL),   A0A8I6AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094511   ⟸   ENSRNOT00000109347
RefSeq Acc Id: ENSRNOP00000080849   ⟸   ENSRNOT00000106910
RefSeq Acc Id: XP_063140210   ⟸   XM_063284140
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140214   ⟸   XM_063284144
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063140212   ⟸   XM_063284142
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140211   ⟸   XM_063284141
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140216   ⟸   XM_063284146
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063140215   ⟸   XM_063284145
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063140219   ⟸   XM_063284149
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140217   ⟸   XM_063284147
- Peptide Label: isoform X6
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQT3-F1-model_v2 AlphaFold Q4QQT3 1-487 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307721 AgrOrtholog
BioCyc Gene G2FUF-48755 BioCyc
Ensembl Genes ENSRNOG00000010379 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014484.8 UniProtKB/TrEMBL
  ENSRNOT00000106910.1 UniProtKB/TrEMBL
  ENSRNOT00000109347.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7454358 IMAGE-MGC_LOAD
InterPro CELF1/2_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CELF1/2_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CELF1/2_RRM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362160 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116159 IMAGE-MGC_LOAD
NCBI Gene 362160 ENTREZGENE
PANTHER CUGBP ELAV-LIKE FAMILY MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Celf1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010379 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZTX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AL51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q6U8 ENTREZGENE, UniProtKB/TrEMBL
  A6HN95 ENTREZGENE, UniProtKB/TrEMBL
  A6HN97_RAT UniProtKB/TrEMBL
  CELF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Celf1  CUGBP, Elav-like family member 1  Cugbp1  CUG triplet repeat, RNA binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cugbp1  CUG triplet repeat, RNA binding protein 1  Cugbp1_predicted  CUG triplet repeat, RNA binding protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cugbp1_predicted  CUG triplet repeat, RNA binding protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED