Epha7 (Eph receptor A7) - Rat Genome Database

Name: Epha7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Epha7 (Eph receptor A7) Rattus norvegicus

Analyze

Symbol:

Epha7

Name:

Eph receptor A7

RGD ID:

70957

Description:

Enables ephrin receptor binding activity and protein tyrosine kinase activity. Involved in phosphorylation and positive regulation of apoptotic process. Located in several cellular components, including Schaffer collateral - CA1 synapse; neuromuscular junction; and postsynaptic membrane. Is active in glutamatergic synapse and hippocampal mossy fiber to CA3 synapse. Is integral component of postsynaptic density membrane. Orthologous to human EPHA7 (EPH receptor A7); PARTICIPATES IN altered ephrin - ephrin receptor bidirectional signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

EHK-3; EPH homology kinase 3; ephrin receptor EphA7; ephrin type-A receptor 7; tyrosine-protein kinase receptor EHK-3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EPHA7 (EPH receptor A7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Epha7 (Eph receptor A7)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Epha7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EPHA7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EPHA7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Epha7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EPHA7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EPHA7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Epha7 (EPH receptor A7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EPHA10 (EPH receptor A10)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	EPHA7 (EPH receptor A7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Epha7 (Eph receptor A7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	epha7 (eph receptor A7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Eph	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	vab-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	42,975,353 - 43,128,703 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	5	42,975,405 - 43,127,112 (+)	Ensembl
Rnor_6.0	5	43,602,744 - 43,761,198 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	43,603,043 - 43,757,549 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	44,728,037 - 44,878,332 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	44,728,215 - 44,878,511 (+)	NCBI
Celera	5	41,793,958 - 41,943,704 (+)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hemorrhage (ISO)

lung small cell carcinoma (ISO)

Spinal Cord Injuries (IMP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

belinostat (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

clozapine (ISO)

cocaine (EXP)

dexamethasone (EXP)

diethyl malate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

fonofos (ISO)

genistein (EXP)

GW 4064 (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

panobinostat (ISO)

paraquat (EXP)

parathion (ISO)

pentanal (ISO)

ponatinib (ISO)

progesterone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

terbufos (ISO)

testosterone (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

warfarin (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

axon guidance (IBA)

brain development (ISO,ISS)

branching morphogenesis of a nerve (ISO,ISS)

ephrin receptor signaling pathway (ISO,ISS)

negative chemotaxis (ISS)

negative regulation of collateral sprouting (ISO)

negative regulation of synapse assembly (ISO)

nephric duct morphogenesis (ISO)

peptidyl-tyrosine phosphorylation (IEA)

phosphorylation (IDA)

positive regulation of apoptotic process (IMP)

positive regulation of kinase activity (IBA)

positive regulation of neuron apoptotic process (ISO,ISS)

positive regulation of protein phosphorylation (ISO)

regulation of cell-cell adhesion (ISO,ISS)

regulation of cysteine-type endopeptidase activity involved in apoptotic process (ISO,ISS)

regulation of ERK1 and ERK2 cascade (ISO,ISS)

regulation of peptidyl-tyrosine phosphorylation (ISO,ISS)

regulation of postsynapse organization (ISO)

regulation of protein autophosphorylation (ISO,ISS)

retinal ganglion cell axon guidance (ISO)

transmembrane receptor protein tyrosine kinase signaling pathway (IBA)

Cellular Component

dendrite (IDA)

glutamatergic synapse (IDA,ISO)

hippocampal mossy fiber to CA3 synapse (IDA)

integral component of plasma membrane (IBA)

integral component of postsynaptic density membrane (IDA)

integral component of postsynaptic specialization membrane (IDA)

neuromuscular junction (IDA)

neuron projection (IBA)

neuronal cell body (IDA)

plasma membrane (ISO)

postsynaptic membrane (IDA)

receptor complex (IBA)

Schaffer collateral - CA1 synapse (IDA)

Molecular Function

ATP binding (IEA)

axon guidance receptor activity (ISO,ISS)

chemorepellent activity (ISO,ISS)

ephrin receptor activity (NAS)

ephrin receptor binding (IDA)

GPI-linked ephrin receptor activity (ISO,ISS)

growth factor binding (ISO)

protein binding (IPI,ISO)

protein tyrosine kinase activity (IDA)

transmembrane receptor protein tyrosine kinase activity (IBA)

transmembrane-ephrin receptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

altered ephrin - ephrin receptor bidirectional signaling pathway (ISS)

ephrin - ephrin receptor bidirectional signaling axis (ISO,ISS)

References

References - curated


1.	Amegandjin CA, etal., J Comp Neurol. 2016 Aug 15;524(12):2462-78. doi: 10.1002/cne.23962. Epub 2016 Feb 26.
2.	Buchert M, etal., J Cell Biol. 1999 Jan 25;144(2):361-71.
3.	Figueroa JD, etal., J Neurosci Res. 2006 Nov 15;84(7):1438-51.
4.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Janis LS, etal., J Neurosci. 1999 Jun 15;19(12):4962-71.
6.	Lai KO, etal., Mol Cell Neurosci. 2001 Jun;17(6):1034-47.
7.	Matsunaga T, etal., Eur J Neurosci 2000 May;12(5):1599-616.
8.	MGD Curation, June 12, 2002
9.	MGD data from the GO Consortium
10.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	RGD automated import pipeline for gene-chemical interactions
14.	Surawska H, etal., Cytokine Growth Factor Rev 2004 Dec;15(6):419-33.
15.	Torres R, etal., Neuron. 1998 Dec;21(6):1453-63.
16.	Valenzuela DM, etal., Oncogene 1995 Apr 20;10(8):1573-80.

Additional References at PubMed

PMID:11089974	PMID:15902206	PMID:15996548	PMID:16301174	PMID:17726105	PMID:19036963	PMID:20576928	PMID:23348681	PMID:24707048	PMID:25139858	PMID:27405707	PMID:30292674
PMID:32396496

Genomics

Comparative Map Data

Epha7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	42,975,353 - 43,128,703 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	5	42,975,405 - 43,127,112 (+)	Ensembl
Rnor_6.0	5	43,602,744 - 43,761,198 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	43,603,043 - 43,757,549 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	44,728,037 - 44,878,332 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	44,728,215 - 44,878,511 (+)	NCBI
Celera	5	41,793,958 - 41,943,704 (+)	NCBI		Celera
Cytogenetic Map	5	q21	NCBI

EPHA7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	6	93,240,020 - 93,419,687 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	6	93,240,020 - 93,419,584 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	6	93,949,738 - 94,129,277 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	94,007,860 - 94,185,993 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	6	94,007,859 - 94,185,993	NCBI
Celera	6	94,370,456 - 94,550,043 (-)	NCBI
Cytogenetic Map	6	q16.1	NCBI
HuRef	6	91,169,863 - 91,349,539 (-)	NCBI		HuRef
CHM1_1	6	94,047,125 - 94,226,695 (-)	NCBI		CHM1_1

Epha7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	28,811,840 - 28,969,391 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	28,813,131 - 28,967,499 (+)	Ensembl
GRCm38	4	28,813,066 - 28,967,503 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	28,813,131 - 28,967,499 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	28,740,295 - 28,894,649 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	28,981,940 - 29,133,870 (+)	NCBI			mm8
Celera	4	28,584,324 - 28,738,712 (+)	NCBI		Celera
Cytogenetic Map	4	A4	NCBI
cM Map	4	12.42	NCBI

Epha7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	19,650,515 - 19,815,512 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	19,652,146 - 19,815,418 (-)	NCBI	ChiLan1.0	ChiLan1.0

EPHA7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	94,392,353 - 94,563,322 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	94,392,353 - 94,566,716 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	91,143,240 - 91,322,040 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

EPHA7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	52,134,775 - 52,305,163 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	52,137,605 - 52,305,162 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	51,943,814 - 52,113,431 (-)	NCBI
ROS_Cfam_1.0	12	52,942,277 - 53,113,070 (-)	NCBI
UMICH_Zoey_3.1	12	52,278,827 - 52,448,685 (-)	NCBI
UNSW_CanFamBas_1.0	12	52,154,143 - 52,325,433 (-)	NCBI
UU_Cfam_GSD_1.0	12	52,347,435 - 52,517,393 (-)	NCBI

Epha7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	86,997,992 - 87,164,862 (-)	NCBI
SpeTri2.0	NW_004936812	698,548 - 865,589 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPHA7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	60,771,571 - 60,944,038 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	60,771,567 - 60,944,092 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	68,252,819 - 68,430,939 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPHA7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	18,097,051 - 18,283,664 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	13	18,099,005 - 18,281,415 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666040	194,422,647 - 194,601,844 (-)	NCBI	Vero_WHO_p1.0

Epha7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624799	560,441 - 753,509 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH143595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	42,976,331 - 42,976,511 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	43,603,757 - 43,603,936	NCBI	Rnor6.0
Rnor_5.0	5	48,231,000 - 48,231,179	UniSTS	Rnor5.0
RGSC_v3.4	5	44,728,891 - 44,729,070	UniSTS	RGSC3.4
Celera	5	41,794,811 - 41,794,990	UniSTS
RH 3.4 Map	5	232.1	UniSTS
Cytogenetic Map	5	q21	UniSTS

UniSTS:266990

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	43,125,075 - 43,125,217 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	43,757,571 - 43,757,712	NCBI	Rnor6.0
Rnor_5.0	5	48,386,410 - 48,386,551	UniSTS	Rnor5.0
RGSC_v3.4	5	44,878,283 - 44,878,424	UniSTS	RGSC3.4
Celera	5	41,943,655 - 41,943,796	UniSTS
Cytogenetic Map	5	q21	UniSTS

UniSTS:224539

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	43,108,923 - 43,109,120 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	43,741,418 - 43,741,614	NCBI	Rnor6.0
Rnor_5.0	5	48,370,257 - 48,370,453	UniSTS	Rnor5.0
RGSC_v3.4	5	44,862,078 - 44,862,274	UniSTS	RGSC3.4
Celera	5	41,927,502 - 41,927,698	UniSTS
Cytogenetic Map	5	q21	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3844018	47869213	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	5112159	47171491	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8948228	53948228	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1549901	Neudeg2	Neurodegradation QTL 2	4	0	nervous system integrity trait (VT:0010566)	mononuclear cell count (CMO:0002119)	5	24838710	44045280	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	89
Count of miRNA genes:	55
Interacting mature miRNAs:	56
Transcripts:	ENSRNOT00000009899, ENSRNOT00000061033
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		12	4	4		4			74	22	26
Low	3	30	15	7	13	7	8	10		13	15	11	8
Below cutoff		1	35	27	6	27

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_134331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U21954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U21955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009899 ⟹ ENSRNOP00000009899

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	42,975,413 - 43,127,112 (+)	Ensembl
Rnor_6.0 Ensembl	5	43,603,043 - 43,757,549 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102430 ⟹ ENSRNOP00000082816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	42,975,405 - 43,109,042 (+)	Ensembl

RefSeq Acc Id:

NM_134331 ⟹ NP_599158

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,478 - 43,125,125 (+)	NCBI
Rnor_6.0	5	43,602,903 - 43,757,620 (+)	NCBI
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI
RGSC_v3.4	5	44,728,037 - 44,878,332 (+)	RGD
Celera	5	41,793,958 - 41,943,704 (+)	RGD

Sequence:

show sequence

GCAGCCGGCCTGGGACCCAGAAAGGGATCGATGAGAGGAGCGCAATAATAACAATAATAACCCA
CTTCGGAGCAAACAGCATCTAAAGAGCTGCGACCCAACTGCAGCCTAAAAAAAAAAATCAAACC
TGCTCATGCACCATGGTTGTTCAAACTCGGTACCCTTCGTGGATTATTTTGTGTTACATCTGGC
TGCTTGGCTTTGCACACACGGGGGAGGCGCAGGCTGCGAAGGAAGTACTGTTACTGGACTCGAA
AGCACAACAAACAGAATTGGAATGGATTTCCTCTCCACCCAGTGGGTGGGAAGAAATTAGTGGT
TTGGATGAGAACTACACACCAATAAGAACATACCAGGTGTGCCAGGTCATGGAGCCCAACCAGA
ACAACTGGCTTCGGACTAACTGGATTTCTAAAGGCAACGCACAAAGGATTTTTGTAGAATTGAA
ATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAGTCCTGGGAACTTGCAAGGAAACCTTTAAT
TTGTACTATTATGAAACAGACTACGACACCGGCAGGAATATACGAGAAAACCTTTACGTTAAAA
TAGACACCATTGCTGCAGATGAAAGTTTTACACAAGGTGACCTTGGTGAAAGAAAGATGAAGCT
GAACACTGAGGTGAGAGAGATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCCTTTCAGGAT
GTAGGGGCTTGCATAGCATTGGTTTCTGTCAAAGTATACTACAAGAAGTGCTGGTCCATTATTG
AGAACTTAGCTGTCTTTCCAGATACAGTGACTGGTTCAGAATTTTCCTCCTTAGTTGAGGTCCG
TGGGACATGTGTCAGCAGTGCCGAGGAAGAGGCAGAAAATTCACCCAGGATGCATTGCAGTGCA
GAAGGAGAGTGGTTAGTACCCATTGGAAAATGTATCTGCAAAGCAGGCTATCAGCAAAAAGGGG
ACACTTGTGAACCCTGTGGCCGCAGGTTCTACAAATCTTCCTCTCAGGACCTTCAGTGTTCTCG
TTGTCCAACCCACAGTTTCTCTGACCGAGAAGGATCATCGAGGTGTGAATGTGAAGACGGGTAC
TACAGAGCTCCTTCTGACCCACCATACGTCGCATGCACGAGGCCTCCCTCTGCACCACAGAACC
TTATTTTCAACATCAATCAAACGACTGTAAGTTTGGAGTGGAGTCCTCCAGCTGACAACGGAGG
AAGAAACGATGTCACCTACAGAATATTGTGTAAGCGGTGCAGCTGGGAGCAGGGAGAATGTGTA
CCATGCGGAAGTAACATTGGATACATGCCCCAGCAGACGGGATTAGAGGATAACTATGTCACTG
TCATGGACCTGCTTGCCCATGCAAATTACACGTTCGAAGTTGAAGCTGTAAATGGAGTTTCAGA
CTTAAGCAGATCCCAGAGGCTTTTTGCAGCCGTTAGCATCACCACTGGTCAAGCAGCTCCCTCG
CAAGTGAGCGGAGTGATGAAGGAGAGAGTGCTGCAGCGGAGTGTGGAGCTTTCCTGGCAGGAAC
CAGAACATCCCAACGGAGTCATCACGGAATATGAAATCAAGTATTATGAGAAAGATCAAAGAGA
AAGGACGTACTCAACACTGAAAACCAAGTCCACCTCAGCCTCCATTAATAATCTGAAACCGGGA
ACAGTGTATGTTTTTCAGATCCGGGCGTTCACTGCTGCCGGCTATGGAAATTACAGCCCTAGGC
TGGATGTTGCAACACTAGAGGAAGCTTCAGGTAAAATGTTTGAAGCAACAGCGGTGTCCAGTGA
ACAGAATCCCGTCATCATAATTGCTGTGGTGGCTGTAGCAGGGACCATCATCTTGGTGTTCATG
GTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGGTTACAGCAAGGCTGACCAAGAAGGGGATG
AAGAACTCTACTTTCATTTTAAATTTCCAGGCACCAAAACCTACATTGACCCTGAAACCTATGA
GGACCCAAATAGAGCTGTCCATCAATTCGCCAAGGAGCTAGATGCCTCCTGTATTAAAATTGAG
CGTGTGATTGGTGCAGGAGAATTTGGAGAAGTTTGCAGTGGTCGTTTGAAACTTCCAGGGAAAA
GAGATGTTGCAGTGGCTATAAAAACCCTGAAAGTTGGTTACACAGAAAAACAAAGGAGGGACTT
TTTATGCGAAGCAAGCATCATGGGGCAATTTGACCACCCAAATGTCGTCCATTTGGAAGGGGTT
GTTACAAGAGGGAAGCCTGTCATGATCGTGATAGAGTTCATGGAGAACGGCGCCCTGGATGCAT
TTCTCAGGAAACATGATGGGCAATTTACAGTCATTCAGTTGGTAGGAATGCTGAGAGGAATTGC
GGCTGGCATGCGCTACTTGGCTGACATGGGATACGTTCACAGGGACCTTGCGGCTCGCAACATT
CTTGTGAACAGCAATCTTGTTTGTAAAGTGTCCGATTTTGGCCTGTCCCGGGTTATAGAGGATG
ACCCCGAAGCTGTCTACACGACTACTGGTGGAAAAATTCCAGTAAGGTGGACTGCCCCTGAAGC
CATCCAATACCGGAAATTCACCTCAGCCAGTGATGTGTGGAGCTATGGGATTGTCATGTGGGAA
GTAATGTCTTATGGAGAACGACCTTATTGGGACATGTCGAATCAAGATGTCATTAAAGCGATAG
AAGAAGGTTATCGCTTACCAGCACCCATGGACTGCCCAGCTGGTCTTCACCAGCTAATGCTGGA
TTGTTGGCAGAAAGAACGGGCAGAGAGGCCAAAGTTTGAGCAGATAGTCGGAATTCTAGACAAA
ATGATTCGAAATCCAAGCAGTCTGAAAACACCCCTGGGAACTTGTAGCAGACCCATAAGCCCTC
TTCTGGACCAGAGCACTCCCGACTTCACTGCCTTCTGTTCAGTGGGAGAGTGGTTGCAGGCTAT
TAAAATGGAGAGGTATAAAGACAACTTCACAGCGGCAGGTTACAACTCACTCGAGTCGGTGGCC
CGGATGACCATCGACGATGTGATGAGTTTAGGGATCACACTGGTTGGCCATCAAAAGAAGATTA
TGAGCAGCATCCAGACTATGCGGGCACAGATGCTGCACTTACACGGAACCGGCATCCAAGTGTG
ACACATCCGCCTCCCTCAGTGAGGCTTAAGACTGCAAGAGAACAGTTCCGGCCTTCAGTATNCA
CAAAGAAT

hide sequence

RefSeq Acc Id:

XM_006237962 ⟹ XP_006238024

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,363 - 43,128,580 (+)	NCBI
Rnor_6.0	5	43,602,744 - 43,761,198 (+)	NCBI
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI

Sequence:

show sequence

GTCGGAGTGGCGGAGGCTCTGGGTTCGGAGCCCCGCCCCCTCCCCCCCTAATTGATATTATTGG
AGTGTGGAGCAAGCGGCCGGTCTGCAGTCGGAGACTTGCAGGCAGCAAACACGGTGCGAACGAA
CCGGAGGGGGGAAAGAGAAATCAAACGAGGAGCAGCCGGCCTGGGACCCAGAAAGGGATCGATG
AGAGGAGCGCAATAATAACAATAATAACCCACTTCGGAGCAAACAGCATCTAAAGAGCTGCGAC
CCAACTGCAGCCTAAAAAAAAAAATCAAACCTGCTCATGCACCATGGTTGTTCAAACTCGGTAC
CCTTCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGCACACACGGGGGAGGCGCAGG
CTGCGAAGGAAGTACTGTTACTGGACTCGAAAGCACAACAAACAGAATTGGAATGGATTTCCTC
TCCACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACACCAATAAGAACATAC
CAGGTGTGCCAGGTCATGGAGCCCAACCAGAACAACTGGCTTCGGACTAACTGGATTTCTAAAG
GCAACGCACAAAGGATTTTTGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGG
AGTCCTGGGAACTTGCAAGGAAACCTTTAATTTGTACTATTATGAAACAGACTACGACACCGGC
AGGAATATACGAGAAAACCTTTACGTTAAAATAGACACCATTGCTGCAGATGAAAGTTTTACAC
AAGGTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGAGATTGGACCTTTGTC
CAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTGTCAAA
GTATACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTG
GTTCAGAATTTTCCTCCTTAGTTGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGC
AGAAAATTCACCCAGGATGCATTGCAGTGCAGAAGGAGAGTGGTTAGTACCCATTGGAAAATGT
ATCTGCAAAGCAGGCTATCAGCAAAAAGGGGACACTTGTGAACCCTGTGGCCGCAGGTTCTACA
AATCTTCCTCTCAGGACCTTCAGTGTTCTCGTTGTCCAACCCACAGTTTCTCTGACCGAGAAGG
ATCATCGAGGTGTGAATGTGAAGACGGGTACTACAGAGCTCCTTCTGACCCACCATACGTCGCA
TGCACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAACATCAATCAAACGACTGTAAGTT
TGGAGTGGAGTCCTCCAGCTGACAACGGAGGAAGAAACGATGTCACCTACAGAATATTGTGTAA
GCGGTGCAGCTGGGAGCAGGGAGAATGTGTACCATGCGGAAGTAACATTGGATACATGCCCCAG
CAGACGGGATTAGAGGATAACTATGTCACTGTCATGGACCTGCTTGCCCATGCAAATTACACGT
TCGAAGTTGAAGCTGTAAATGGAGTTTCAGACTTAAGCAGATCCCAGAGGCTTTTTGCAGCCGT
TAGCATCACCACTGGTCAAGCAGCTCCCTCGCAAGTGAGCGGAGTGATGAAGGAGAGAGTGCTG
CAGCGGAGTGTGGAGCTTTCCTGGCAGGAACCAGAACATCCCAACGGAGTCATCACGGAATATG
AAATCAAGTATTATGAGAAAGATCAAAGAGAAAGGACGTACTCAACACTGAAAACCAAGTCCAC
CTCAGCCTCCATTAATAATCTGAAACCGGGAACAGTGTATGTTTTTCAGATCCGGGCGTTCACT
GCTGCCGGCTATGGAAATTACAGCCCTAGGCTGGATGTTGCAACACTAGAGGAAGCTTCAGGTA
AAATGTTTGAAGCAACAGCGGTGTCCAGTGAACAGAATCCCGTCATCATAATTGCTGTGGTGGC
TGTAGCAGGGACCATCATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGT
GGTTACAGCAAGGCTGACCAAGAAGGGGATGAAGAACTCTACTTTCATTGCACCAAAACCTACA
TTGACCCTGAAACCTATGAGGACCCAAATAGAGCTGTCCATCAATTCGCCAAGGAGCTAGATGC
CTCCTGTATTAAAATTGAGCGTGTGATTGGTGCAGGAGAATTTGGAGAAGTTTGCAGTGGTCGT
TTGAAACTTCCAGGGAAAAGAGATGTTGCAGTGGCTATAAAAACCCTGAAAGTTGGTTACACAG
AAAAACAAAGGAGGGACTTTTTATGCGAAGCAAGCATCATGGGGCAATTTGACCACCCAAATGT
CGTCCATTTGGAAGGGGTTGTTACAAGAGGGAAGCCTGTCATGATCGTGATAGAGTTCATGGAG
AACGGCGCCCTGGATGCATTTCTCAGGAAACATGATGGGCAATTTACAGTCATTCAGTTGGTAG
GAATGCTGAGAGGAATTGCGGCTGGCATGCGCTACTTGGCTGACATGGGATACGTTCACAGGGA
CCTTGCGGCTCGCAACATTCTTGTGAACAGCAATCTTGTTTGTAAAGTGTCCGATTTTGGCCTG
TCCCGGGTTATAGAGGATGACCCCGAAGCTGTCTACACGACTACTGGTGGAAAAATTCCAGTAA
GGTGGACTGCCCCTGAAGCCATCCAATACCGGAAATTCACCTCAGCCAGTGATGTGTGGAGCTA
TGGGATTGTCATGTGGGAAGTAATGTCTTATGGAGAACGACCTTATTGGGACATGTCGAATCAA
GATGTCATTAAAGCGATAGAAGAAGGTTATCGCTTACCAGCACCCATGGACTGCCCAGCTGGTC
TTCACCAGCTAATGCTGGATTGTTGGCAGAAAGAACGGGCAGAGAGGCCAAAGTTTGAGCAGAT
AGTCGGAATTCTAGACAAAATGATTCGAAATCCAAGCAGTCTGAAAACACCCCTGGGAACTTGT
AGCAGACCCATAAGCCCTCTTCTGGACCAGAGCACTCCCGACTTCACTGCCTTCTGTTCAGTGG
GAGAGTGGTTGCAGGCTATTAAAATGGAGAGGTATAAAGACAACTTCACAGCGGCAGGTTACAA
CTCACTCGAGTCGGTGGCCCGGATGACCATCGACGATGTGATGAGTTTAGGGATCACACTGGTT
GGCCATCAAAAGAAGATTATGAGCAGCATCCAGACTATGCGGGCACAGATGCTGCACTTACACG
GAACCGGCATCCAAGTGTGACACATCCGCCTCCCTCAGTGAGGCTTAAGACTGCAAGAGAACAG
TTCCGGCCTTCAGTATACACATAGAATGCTGCTAGAAGACAGTTTGATATACTGGGTCCTTCCT
ACAATAAAGAGAAGATTTTAGAAGCACCTACAGACTTGAACTCCTAAGTGCCACCAGAATATAC
AAAAAGGGAATTTAGGATCCACCACTGGTGGCCAGGAACACAGCAGAGACAATAAACAAAGTAC
TACCTGAAAAAAACATCCCAACACCTTGAGCTCTCGAACCTCCTTTTTATCTTATAGACTTTTT
AAAATGTACATAAAGAATTTAAGAAAGAATATATTTGTCAAATAAAATCATGATCTTATTGTTA
AAAAAATCAATGAAATATTTTCCTTAAAATATGTGATTTCAGACTATTCTTTTTCCAGAACCAT
CTGTGTTGATTCTGCATAAGGACTTTGTTTTAGAAAGTTATTTGTAGCTTTGGACCTTTTTAGC
GTTAAATTTACGACACGTAACTACACTGGGTACCTTTGAGGGAATCTCAAACTTAAAGGAAAAC
AAAACTACGGCACATCGTTGAGGATATGACTTTGTCCTTCCTGGCTTTGGTATCCTGGCTGTGT
CATTTTGTTCTGTTAAACCAGTGATGTTTTGTTATTGTTTGCGAATTGGCAGGTAGTTCAGAAT
TGCAAGTTGCCAAGAGCGCTGATATTTTTTAACGGGAATTTTTTTTTCTTTGTAAAAATCAGAC
AACATACTAACTTTTCAATGAAAAAGACAAAGCAATAATGATCCATAAATACTATAAGGCACTT
TTAACAGATTGTTTATAGAGTGATTTACTAGGCAGAATTTAATAAAAAAAATGTCAAATTTTAG
GTTTATGTGTATATGATAAAAAGGCTGAGGCTTTATCTGAAGAGGCTGGTGAAAGTGTTTCTGG
AGGCAGAAGCTCTCCAGCGTTGGCTCACCCCGTCGGAGCACATCAAGAGTTTCAGTCTTGTGAC
AGTAAGAAATTTAGGAACATAGTTGACCTATATTTTGTATTCTTTCTTGTTGAATGCAGTCCAA
ATACAAAAGTAACGAATTCAGTTTTCTACTGTTACTCTGAAGCAAGATCACAGGGGGCAGTTCA
CTTCTCACCACTCACAGACTAATGTGCAGCAAATACTTCTACCACTGCAGTGAGAAGAAAGCAA
AACAGAGGTATTTTATCTATGAACAGTCACACACACACACACACACACACACACACACACACAC
ACACACACACCCCTTTTAGGTCAAAATTCATTTACCCCAGAAGGAAGAAGTAAAGGGTCTGGCT
TTTCTGTTTCCACTTTATTTATCAGACCATATTATTTGGTTACTGTGTTAGAATTTCATAAGCA
ATAATTAAATGTGTCTTTATAGGTATTTCAGGAATGTATACATATTTGAGTAATGTTTTTCAAA
AGTTAGAAAAATCATGAACTACCCCAAAACCGAACTGTTGTACTTCCAAAGAAAATTGGGCTGT
TTATAACAATTTTACTAGAGAAAGATCCCAGGGATCGGTCCTAATTGGTGTTGTTTGGTAATGT
GGGCCTCCACAAACAAACAAACAAAAACAGGTAACACGCGAAATCTGTAAATGTTCCTTTGTAA
AACTTGTAAATTTTATTTATACCGTCTTGTTTTGTATACACATTTCTCAGTAGTGGCTCCAAGT
ACATGAAAATGCACTATATTTTTCTATTTTACTTGCAGAGCTTCTCAAAGAAACAGGTATTTTC
AGTGCTACATAATGTGTTTTTCCCACATTTAGGACCAAAGATGGCTATAGAAAACTCAAATGGA
TTGCTTCCCAAACCCCTCCCTATCCATTTTTGTTTTTTTTTCTTTTACCACTGTACAGTGTTAT
TTGATATTTTAATTTATTTTTTTTGATTGAATAGAAAACTCATTTTAATTTCTCTAAAAATGTT
TTTGTCCCTAAGGAAAACAAAAATCTGTAAAAATAATTTTAATTAGCGTAATCCAGTCACCCTA
GACACTTCCATTTGTAATCTTTGTAATAGACTGTAAATATATTTTTGGAACTATAACACAATGT
GCTTGAGGGTTATTTTTCAGTGTGTGCAGTGTATACAAAAGTGTTTATACTCAGTACAGCACTT
TACAATTCTAATCAGTAGCGTTGGCCTTTGTGCGAATGAGTGCGAGCTTGAGCGAGTGTTCTCT
AATTCCGTTTGGATTCTGGACTCACTAATAATGAAGTTCTTTTCTTGTTCATAGCTTAAGGTGC
TTATTTTTTCTATTAAAAATTAAATTAACAAAAAAGCCATTCTAGAAATAGAAGACGCAGTATG
GTACATGCAGACAGAGTCTTTCCTGCTTTTTCTAGTAATAGATTTATAGTTGAGTAGTCTTTCT
TGAGTAGAAGGGCAGAATAAAAGTGTTTTGTTTTGTTTTATTTTGTTTTTAATTTTCTTTTCAA
AAATAACTTTTTCCTTCAGCAATATACCTCATCTGCCTTAAATTTTTTACAGCTCTTTACAGGG
AAAGGGGAGAAGGGATGGGAAAGACACAGCACAATAGGAAGTGGATGATTGCATCGTGCTCTCT
CTTTTGTAGGTTTCTTTTTCTAATCAACACTATGATTTTTGAAGTACGCGAACGTGAAGCAAAC
ATGGAGAGATGAGGAATTAGCATTGTGAACCTGATTGTAATCCTCTCTTCCAGTAAGAGATGAG
ACGCTATTGCAGTGAGAATGTACAACTTGCTTGCACCTTGAAATCTTTTTTGATAATTAGTGCT
CAGGGGGAGGGAAGTAGAGAAAGCAAACGCCCAACAGAGAATTCCAAAAGGACAGAACACACAA
CAGGAAGTTGCCTCCTTGCTTTAATGTAGCCACCTTTTTTTTATAGAACACCGCCCACCCACAC
CACCTGGTTTGCATTCAGTTCTGAAATACTTACAAGTAACTTGTTGCATTGAGAACGAGTCTTT
TCTCAGCAATGGATCAGGGCCTCGTTTTCTAGACTGGTGGCTCATGCTTCTCAGAGCACTATTG
GTTGAATCATATTGTATACTTATGTAATCTACATTAGCTAGTACTCTTTAGGACTATATTTTAA
TTGCTCCTCTTCTTGGTGTTTTTAAGACAATGGAAAGGGTGTAAGTCACCTCTCTTTTATTTAG
GTAATGCTGATCCCTCCCCTTTTGTTTCCTGAGCAGCCCAAAACTGTACTGCTCCCCTATGTGC
ATGTTCCAATGAATTACTGATGTGTATTTTTTTTTCCTTTTTTTGCTATATGTGGAGAAATCAT
GGGGAACTCGGGGCGAAATATGCTTTTTGTTGGTTGAATTTTGTCCCTCCTTGCCTAAGAATTA
CTACAGGGGTCATCCTTTTATAAGGACAAAAATATGCTTTTGAACAGTGTCTTCAATGTATCAA
GCACAAATAACTCTTTCTTCAACACGAATCATAAGTCTCTTTTTACCAGCTTAAAATAATAAAC
AAGTCTATTAGACAATGTAAAGAAAATCCTGTCTCCAGTCATTGGTGGGCTCCTTCACATTCCT
TATGCTTTCCTTTCCTACCTAAGAAGATTTTGTGAAAATAGTTCTGCGGGGCTGATCAGAATAT
GAATAAAACTGATTATTCCTA

hide sequence

RefSeq Acc Id:

XM_006237963 ⟹ XP_006238025

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,363 - 43,128,580 (+)	NCBI
Rnor_6.0	5	43,602,744 - 43,761,198 (+)	NCBI
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI

Sequence:

show sequence

GTCGGAGTGGCGGAGGCTCTGGGTTCGGAGCCCCGCCCCCTCCCCCCCTAATTGATATTATTGG
AGTGTGGAGCAAGCGGCCGGTCTGCAGTCGGAGACTTGCAGGCAGCAAACACGGTGCGAACGAA
CCGGAGGGGGGAAAGAGAAATCAAACGAGGAGCAGCCGGCCTGGGACCCAGAAAGGGATCGATG
AGAGGAGCGCAATAATAACAATAATAACCCACTTCGGAGCAAACAGCATCTAAAGAGCTGCGAC
CCAACTGCAGCCTAAAAAAAAAAATCAAACCTGCTCATGCACCATGGTTGTTCAAACTCGGTAC
CCTTCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGCACACACGGGGGAGGCGCAGG
CTGCGAAGGAAGTACTGTTACTGGACTCGAAAGCACAACAAACAGAATTGGAATGGATTTCCTC
TCCACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACACCAATAAGAACATAC
CAGGTGTGCCAGGTCATGGAGCCCAACCAGAACAACTGGCTTCGGACTAACTGGATTTCTAAAG
GCAACGCACAAAGGATTTTTGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGG
AGTCCTGGGAACTTGCAAGGAAACCTTTAATTTGTACTATTATGAAACAGACTACGACACCGGC
AGGAATATACGAGAAAACCTTTACGTTAAAATAGACACCATTGCTGCAGATGAAAGTTTTACAC
AAGGTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGAGATTGGACCTTTGTC
CAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTGTCAAA
GTATACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTG
GTTCAGAATTTTCCTCCTTAGTTGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGC
AGAAAATTCACCCAGGATGCATTGCAGTGCAGAAGGAGAGTGGTTAGTACCCATTGGAAAATGT
ATCTGCAAAGCAGGCTATCAGCAAAAAGGGGACACTTGTGAACCCTGTGGCCGCAGGTTCTACA
AATCTTCCTCTCAGGACCTTCAGTGTTCTCGTTGTCCAACCCACAGTTTCTCTGACCGAGAAGG
ATCATCGAGGTGTGAATGTGAAGACGGGTACTACAGAGCTCCTTCTGACCCACCATACGTCGCA
TGCACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAACATCAATCAAACGACTGTAAGTT
TGGAGTGGAGTCCTCCAGCTGACAACGGAGGAAGAAACGATGTCACCTACAGAATATTGTGTAA
GCGGTGCAGCTGGGAGCAGGGAGAATGTGTACCATGCGGAAGTAACATTGGATACATGCCCCAG
CAGACGGGATTAGAGGATAACTATGTCACTGTCATGGACCTGCTTGCCCATGCAAATTACACGT
TCGAAGTTGAAGCTGTAAATGGAGTTTCAGACTTAAGCAGATCCCAGAGGCTTTTTGCAGCCGT
TAGCATCACCACTGGTCAAGCAGCTCCCTCGCAAGTGAGCGGAGTGATGAAGGAGAGAGTGCTG
CAGCGGAGTGTGGAGCTTTCCTGGCAGGAACCAGAACATCCCAACGGAGTCATCACGGAATATG
AAATCAAGTATTATGAGAAAGATCAAAGAGAAAGGACGTACTCAACACTGAAAACCAAGTCCAC
CTCAGCCTCCATTAATAATCTGAAACCGGGAACAGTGTATGTTTTTCAGATCCGGGCGTTCACT
GCTGCCGGCTATGGAAATTACAGCCCTAGGCTGGATGTTGCAACACTAGAGGAAGCTTCAGCAA
CAGCGGTGTCCAGTGAACAGAATCCCGTCATCATAATTGCTGTGGTGGCTGTAGCAGGGACCAT
CATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGGTTACAGCAAGGCT
GACCAAGAAGGGGATGAAGAACTCTACTTTCATTTTAAATTTCCAGGCACCAAAACCTACATTG
ACCCTGAAACCTATGAGGACCCAAATAGAGCTGTCCATCAATTCGCCAAGGAGCTAGATGCCTC
CTGTATTAAAATTGAGCGTGTGATTGGTGCAGGAGAATTTGGAGAAGTTTGCAGTGGTCGTTTG
AAACTTCCAGGGAAAAGAGATGTTGCAGTGGCTATAAAAACCCTGAAAGTTGGTTACACAGAAA
AACAAAGGAGGGACTTTTTATGCGAAGCAAGCATCATGGGGCAATTTGACCACCCAAATGTCGT
CCATTTGGAAGGGGTTGTTACAAGAGGGAAGCCTGTCATGATCGTGATAGAGTTCATGGAGAAC
GGCGCCCTGGATGCATTTCTCAGGAAACATGATGGGCAATTTACAGTCATTCAGTTGGTAGGAA
TGCTGAGAGGAATTGCGGCTGGCATGCGCTACTTGGCTGACATGGGATACGTTCACAGGGACCT
TGCGGCTCGCAACATTCTTGTGAACAGCAATCTTGTTTGTAAAGTGTCCGATTTTGGCCTGTCC
CGGGTTATAGAGGATGACCCCGAAGCTGTCTACACGACTACTGGTGGAAAAATTCCAGTAAGGT
GGACTGCCCCTGAAGCCATCCAATACCGGAAATTCACCTCAGCCAGTGATGTGTGGAGCTATGG
GATTGTCATGTGGGAAGTAATGTCTTATGGAGAACGACCTTATTGGGACATGTCGAATCAAGAT
GTCATTAAAGCGATAGAAGAAGGTTATCGCTTACCAGCACCCATGGACTGCCCAGCTGGTCTTC
ACCAGCTAATGCTGGATTGTTGGCAGAAAGAACGGGCAGAGAGGCCAAAGTTTGAGCAGATAGT
CGGAATTCTAGACAAAATGATTCGAAATCCAAGCAGTCTGAAAACACCCCTGGGAACTTGTAGC
AGACCCATAAGCCCTCTTCTGGACCAGAGCACTCCCGACTTCACTGCCTTCTGTTCAGTGGGAG
AGTGGTTGCAGGCTATTAAAATGGAGAGGTATAAAGACAACTTCACAGCGGCAGGTTACAACTC
ACTCGAGTCGGTGGCCCGGATGACCATCGACGATGTGATGAGTTTAGGGATCACACTGGTTGGC
CATCAAAAGAAGATTATGAGCAGCATCCAGACTATGCGGGCACAGATGCTGCACTTACACGGAA
CCGGCATCCAAGTGTGACACATCCGCCTCCCTCAGTGAGGCTTAAGACTGCAAGAGAACAGTTC
CGGCCTTCAGTATACACATAGAATGCTGCTAGAAGACAGTTTGATATACTGGGTCCTTCCTACA
ATAAAGAGAAGATTTTAGAAGCACCTACAGACTTGAACTCCTAAGTGCCACCAGAATATACAAA
AAGGGAATTTAGGATCCACCACTGGTGGCCAGGAACACAGCAGAGACAATAAACAAAGTACTAC
CTGAAAAAAACATCCCAACACCTTGAGCTCTCGAACCTCCTTTTTATCTTATAGACTTTTTAAA
ATGTACATAAAGAATTTAAGAAAGAATATATTTGTCAAATAAAATCATGATCTTATTGTTAAAA
AAATCAATGAAATATTTTCCTTAAAATATGTGATTTCAGACTATTCTTTTTCCAGAACCATCTG
TGTTGATTCTGCATAAGGACTTTGTTTTAGAAAGTTATTTGTAGCTTTGGACCTTTTTAGCGTT
AAATTTACGACACGTAACTACACTGGGTACCTTTGAGGGAATCTCAAACTTAAAGGAAAACAAA
ACTACGGCACATCGTTGAGGATATGACTTTGTCCTTCCTGGCTTTGGTATCCTGGCTGTGTCAT
TTTGTTCTGTTAAACCAGTGATGTTTTGTTATTGTTTGCGAATTGGCAGGTAGTTCAGAATTGC
AAGTTGCCAAGAGCGCTGATATTTTTTAACGGGAATTTTTTTTTCTTTGTAAAAATCAGACAAC
ATACTAACTTTTCAATGAAAAAGACAAAGCAATAATGATCCATAAATACTATAAGGCACTTTTA
ACAGATTGTTTATAGAGTGATTTACTAGGCAGAATTTAATAAAAAAAATGTCAAATTTTAGGTT
TATGTGTATATGATAAAAAGGCTGAGGCTTTATCTGAAGAGGCTGGTGAAAGTGTTTCTGGAGG
CAGAAGCTCTCCAGCGTTGGCTCACCCCGTCGGAGCACATCAAGAGTTTCAGTCTTGTGACAGT
AAGAAATTTAGGAACATAGTTGACCTATATTTTGTATTCTTTCTTGTTGAATGCAGTCCAAATA
CAAAAGTAACGAATTCAGTTTTCTACTGTTACTCTGAAGCAAGATCACAGGGGGCAGTTCACTT
CTCACCACTCACAGACTAATGTGCAGCAAATACTTCTACCACTGCAGTGAGAAGAAAGCAAAAC
AGAGGTATTTTATCTATGAACAGTCACACACACACACACACACACACACACACACACACACACA
CACACACCCCTTTTAGGTCAAAATTCATTTACCCCAGAAGGAAGAAGTAAAGGGTCTGGCTTTT
CTGTTTCCACTTTATTTATCAGACCATATTATTTGGTTACTGTGTTAGAATTTCATAAGCAATA
ATTAAATGTGTCTTTATAGGTATTTCAGGAATGTATACATATTTGAGTAATGTTTTTCAAAAGT
TAGAAAAATCATGAACTACCCCAAAACCGAACTGTTGTACTTCCAAAGAAAATTGGGCTGTTTA
TAACAATTTTACTAGAGAAAGATCCCAGGGATCGGTCCTAATTGGTGTTGTTTGGTAATGTGGG
CCTCCACAAACAAACAAACAAAAACAGGTAACACGCGAAATCTGTAAATGTTCCTTTGTAAAAC
TTGTAAATTTTATTTATACCGTCTTGTTTTGTATACACATTTCTCAGTAGTGGCTCCAAGTACA
TGAAAATGCACTATATTTTTCTATTTTACTTGCAGAGCTTCTCAAAGAAACAGGTATTTTCAGT
GCTACATAATGTGTTTTTCCCACATTTAGGACCAAAGATGGCTATAGAAAACTCAAATGGATTG
CTTCCCAAACCCCTCCCTATCCATTTTTGTTTTTTTTTCTTTTACCACTGTACAGTGTTATTTG
ATATTTTAATTTATTTTTTTTGATTGAATAGAAAACTCATTTTAATTTCTCTAAAAATGTTTTT
GTCCCTAAGGAAAACAAAAATCTGTAAAAATAATTTTAATTAGCGTAATCCAGTCACCCTAGAC
ACTTCCATTTGTAATCTTTGTAATAGACTGTAAATATATTTTTGGAACTATAACACAATGTGCT
TGAGGGTTATTTTTCAGTGTGTGCAGTGTATACAAAAGTGTTTATACTCAGTACAGCACTTTAC
AATTCTAATCAGTAGCGTTGGCCTTTGTGCGAATGAGTGCGAGCTTGAGCGAGTGTTCTCTAAT
TCCGTTTGGATTCTGGACTCACTAATAATGAAGTTCTTTTCTTGTTCATAGCTTAAGGTGCTTA
TTTTTTCTATTAAAAATTAAATTAACAAAAAAGCCATTCTAGAAATAGAAGACGCAGTATGGTA
CATGCAGACAGAGTCTTTCCTGCTTTTTCTAGTAATAGATTTATAGTTGAGTAGTCTTTCTTGA
GTAGAAGGGCAGAATAAAAGTGTTTTGTTTTGTTTTATTTTGTTTTTAATTTTCTTTTCAAAAA
TAACTTTTTCCTTCAGCAATATACCTCATCTGCCTTAAATTTTTTACAGCTCTTTACAGGGAAA
GGGGAGAAGGGATGGGAAAGACACAGCACAATAGGAAGTGGATGATTGCATCGTGCTCTCTCTT
TTGTAGGTTTCTTTTTCTAATCAACACTATGATTTTTGAAGTACGCGAACGTGAAGCAAACATG
GAGAGATGAGGAATTAGCATTGTGAACCTGATTGTAATCCTCTCTTCCAGTAAGAGATGAGACG
CTATTGCAGTGAGAATGTACAACTTGCTTGCACCTTGAAATCTTTTTTGATAATTAGTGCTCAG
GGGGAGGGAAGTAGAGAAAGCAAACGCCCAACAGAGAATTCCAAAAGGACAGAACACACAACAG
GAAGTTGCCTCCTTGCTTTAATGTAGCCACCTTTTTTTTATAGAACACCGCCCACCCACACCAC
CTGGTTTGCATTCAGTTCTGAAATACTTACAAGTAACTTGTTGCATTGAGAACGAGTCTTTTCT
CAGCAATGGATCAGGGCCTCGTTTTCTAGACTGGTGGCTCATGCTTCTCAGAGCACTATTGGTT
GAATCATATTGTATACTTATGTAATCTACATTAGCTAGTACTCTTTAGGACTATATTTTAATTG
CTCCTCTTCTTGGTGTTTTTAAGACAATGGAAAGGGTGTAAGTCACCTCTCTTTTATTTAGGTA
ATGCTGATCCCTCCCCTTTTGTTTCCTGAGCAGCCCAAAACTGTACTGCTCCCCTATGTGCATG
TTCCAATGAATTACTGATGTGTATTTTTTTTTCCTTTTTTTGCTATATGTGGAGAAATCATGGG
GAACTCGGGGCGAAATATGCTTTTTGTTGGTTGAATTTTGTCCCTCCTTGCCTAAGAATTACTA
CAGGGGTCATCCTTTTATAAGGACAAAAATATGCTTTTGAACAGTGTCTTCAATGTATCAAGCA
CAAATAACTCTTTCTTCAACACGAATCATAAGTCTCTTTTTACCAGCTTAAAATAATAAACAAG
TCTATTAGACAATGTAAAGAAAATCCTGTCTCCAGTCATTGGTGGGCTCCTTCACATTCCTTAT
GCTTTCCTTTCCTACCTAAGAAGATTTTGTGAAAATAGTTCTGCGGGGCTGATCAGAATATGAA
TAAAACTGATTATTCCTA

hide sequence

RefSeq Acc Id:

XM_006237964 ⟹ XP_006238026

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,361 - 43,109,317 (+)	NCBI
Rnor_6.0	5	43,602,747 - 43,742,281 (+)	NCBI
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI

Sequence:

show sequence

GGAGTGGCGGAGGCTCTGGGTTCGGAGCCCCGCCCCCTCCCCCCCTAATTGATATTATTGGAGT
GTGGAGCAAGCGGCCGGTCTGCAGTCGGAGACTTGCAGGCAGCAAACACGGTGCGAACGAACCG
GAGGGGGGAAAGAGAAATCAAACGAGGAGCAGCCGGCCTGGGACCCAGAAAGGGATCGATGAGA
GGAGCGCAATAATAACAATAATAACCCACTTCGGAGCAAACAGCATCTAAAGAGCTGCGACCCA
ACTGCAGCCTAAAAAAAAAAATCAAACCTGCTCATGCACCATGGTTGTTCAAACTCGGTACCCT
TCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGCACACACGGGGGAGGCGCAGGCTG
CGAAGGAAGTACTGTTACTGGACTCGAAAGCACAACAAACAGAATTGGAATGGATTTCCTCTCC
ACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACACCAATAAGAACATACCAG
GTGTGCCAGGTCATGGAGCCCAACCAGAACAACTGGCTTCGGACTAACTGGATTTCTAAAGGCA
ACGCACAAAGGATTTTTGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAGT
CCTGGGAACTTGCAAGGAAACCTTTAATTTGTACTATTATGAAACAGACTACGACACCGGCAGG
AATATACGAGAAAACCTTTACGTTAAAATAGACACCATTGCTGCAGATGAAAGTTTTACACAAG
GTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGAGATTGGACCTTTGTCCAA
AAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTGTCAAAGTA
TACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTGGTT
CAGAATTTTCCTCCTTAGTTGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGCAGA
AAATTCACCCAGGATGCATTGCAGTGCAGAAGGAGAGTGGTTAGTACCCATTGGAAAATGTATC
TGCAAAGCAGGCTATCAGCAAAAAGGGGACACTTGTGAACCCTGTGGCCGCAGGTTCTACAAAT
CTTCCTCTCAGGACCTTCAGTGTTCTCGTTGTCCAACCCACAGTTTCTCTGACCGAGAAGGATC
ATCGAGGTGTGAATGTGAAGACGGGTACTACAGAGCTCCTTCTGACCCACCATACGTCGCATGC
ACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAACATCAATCAAACGACTGTAAGTTTGG
AGTGGAGTCCTCCAGCTGACAACGGAGGAAGAAACGATGTCACCTACAGAATATTGTGTAAGCG
GTGCAGCTGGGAGCAGGGAGAATGTGTACCATGCGGAAGTAACATTGGATACATGCCCCAGCAG
ACGGGATTAGAGGATAACTATGTCACTGTCATGGACCTGCTTGCCCATGCAAATTACACGTTCG
AAGTTGAAGCTGTAAATGGAGTTTCAGACTTAAGCAGATCCCAGAGGCTTTTTGCAGCCGTTAG
CATCACCACTGGTCAAGCAGCTCCCTCGCAAGTGAGCGGAGTGATGAAGGAGAGAGTGCTGCAG
CGGAGTGTGGAGCTTTCCTGGCAGGAACCAGAACATCCCAACGGAGTCATCACGGAATATGAAA
TCAAGTATTATGAGAAAGATCAAAGAGAAAGGACGTACTCAACACTGAAAACCAAGTCCACCTC
AGCCTCCATTAATAATCTGAAACCGGGAACAGTGTATGTTTTTCAGATCCGGGCGTTCACTGCT
GCCGGCTATGGAAATTACAGCCCTAGGCTGGATGTTGCAACACTAGAGGAAGCTTCAGGTAAAA
TGTTTGAAGCAACAGCGGTGTCCAGTGAACAGAATCCCGTCATCATAATTGCTGTGGTGGCTGT
AGCAGGGACCATCATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGGT
TACAGCAAGGCTGACCAAGAAGGGGATGAAGAACTCTACTTTCATTCTTTAGTAACAAATGAGC
ATCTGTCAGTTTTATAAACTGCAACAATAACTGTTTAAGACAATCAATTTTGGATAAACAATCA
ACTACAGCAGAATAAATCAAGATTTTTAAGTCCCACTTTCCTTTATACATTCTGCTTATGTTGT
TATATGTTTATTTTTTAAAATCTGATCTTGATTGAATGTGATGCCATAAGCACAGTTAGGCTGC
AGTGTAATATATAAAGACATTGTTCTGAGAGTAGTACGATTTAATGGAAAGTTTGTTTGGTGGC
TTTGTTAAAAATAATAAAGAATTTTTAAGGATATAGTGTAATTTTCTTCATTGCATTAATATAA
CCAACTATGCCTACCTATCTTTGTCTTGAACCAAATGAGTAGATTTGGAATACTCTATTGTAAT
TGAATTTGATATAAAGTGACTTAGCATTTATCTGTTACCTGCATGCTTCTGGGTGCATTGAAAG
ATTTTAACTTTTAAGATGATACTATGTTGTTGAAATTTTGACTACCTTTTGTGAGGCATACTGG
CTACCTCCTCCTATTAGCTGAGATCTTCCAAAGCCTTATAATGAAAAGTTTATATAAACCATTT
CTCTTTCAAATCACTGTCATACTTGGTAACGGATCCCAGGAATATTGTAAATTTTCTAATTTAC
TCTGCACTTTGTATATCCAGCCTCTCTTACCCTCAAGGTGAATATAAATCTATGTCTTTTGAAT
ATTTCTCTTTGATTTTGTGATAGCAGCCCCTCATATCTTGTACTAATTTTATGTATATGTCAAC
AGTGGTTGGTCTTTAAAAATAAATCAAAGAATAAGTAAGATGTCTAAATGTTTTTAATATTGCT
GTCAGGGTAGTGGTCTACCTGTAAACGAAATGTCTTATTTCCCTGGTGTATTAATTTGATGGAT
TGACTGACTGATAGATTTATCAATGTGTCTACAAGTCCATTCCCACCCTCGGTATGGCTTGAAG
TAAGCTGTGATGGCTCTGAGTTTAATCAAACCCTCCGGTCCGATAGGCACAGGCACGCCAGAAA
TTTCGGTGGATGTCTTTTGTTGATTTACTGGAAAAGCAATTCAGTTAGTAACCTATGAGTTGGA
TCCTATGCTACCTATAGAAGCTTGCAGATAATACCTAGACGCCAGCAGACTGGAGTAGTCTGTT
AAAACTGCTGTGAATGAGGTGATGTGGAAGCAAGGTCACTGTTCCAAGGAGCACTCTGCATAAT
GACATTCCTGGGCTGACTGCACAATAAGTGCTTTGCTTCATCACAGTCATGCTTTCTTACATCA

hide sequence

RefSeq Acc Id:

XM_006237965 ⟹ XP_006238027

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,353 - 43,128,703 (+)	NCBI
Rnor_6.0	5	43,602,746 - 43,760,316 (+)	NCBI
Rnor_5.0	5	48,229,993 - 48,390,037 (+)	NCBI

Sequence:

show sequence

CGGAGTGGCGGAGGCTCTGGGTTCGGAGCCCCGCCCCCTCCCCCCCTAATTGATATTATTGGAG
TGTGGAGCAAGCGGCCGGTCTGCAGTCGGAGACTTGCAGGCAGCAAACACGGTGCGAACGAACC
GGAGGGGGGAAAGAGAAATCAAACGAGGAGCAGCCGGCCTGGGACCCAGAAAGGGATCGATGAG
AGGAGCGCAATAATAACAATAATAACCCACTTCGGAGCAAACAGCATCTAAAGAGCTGCGACCC
AACTGCAGCCTAAAAAAAAAAATCAAACCTGCTCATGCACCATGGTTGTTCAAACTCGGTACCC
TTCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGCACACACGGGGGAGGCGCAGGCT
GCGAAGGAAGTACTGTTACTGGACTCGAAAGCACAACAAACAGAATTGGAATGGATTTCCTCTC
CACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACACCAATAAGAACATACCA
GGTGTGCCAGGTCATGGAGCCCAACCAGAACAACTGGCTTCGGACTAACTGGATTTCTAAAGGC
AACGCACAAAGGATTTTTGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAG
TCCTGGGAACTTGCAAGGAAACCTTTAATTTGTACTATTATGAAACAGACTACGACACCGGCAG
GAATATACGAGAAAACCTTTACGTTAAAATAGACACCATTGCTGCAGATGAAAGTTTTACACAA
GGTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGAGATTGGACCTTTGTCCA
AAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTGTCAAAGT
ATACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTGGT
TCAGAATTTTCCTCCTTAGTTGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGCAG
AAAATTCACCCAGGATGCATTGCAGTGCAGAAGGAGAGTGGTTAGTACCCATTGGAAAATGTAT
CTGCAAAGCAGGCTATCAGCAAAAAGGGGACACTTGTGAACCCTGTGGCCGCAGGTTCTACAAA
TCTTCCTCTCAGGACCTTCAGTGTTCTCGTTGTCCAACCCACAGTTTCTCTGACCGAGAAGGAT
CATCGAGGTGTGAATGTGAAGACGGGTACTACAGAGCTCCTTCTGACCCACCATACGTCGCATG
CACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAACATCAATCAAACGACTGTAAGTTTG
GAGTGGAGTCCTCCAGCTGACAACGGAGGAAGAAACGATGTCACCTACAGAATATTGTGTAAGC
GGTGCAGCTGGGAGCAGGGAGAATGTGTACCATGCGGAAGTAACATTGGATACATGCCCCAGCA
GACGGGATTAGAGGATAACTATGTCACTGTCATGGACCTGCTTGCCCATGCAAATTACACGTTC
GAAGTTGAAGCTGTAAATGGAGTTTCAGACTTAAGCAGATCCCAGAGGCTTTTTGCAGCCGTTA
GCATCACCACTGGTCAAGCAGCTCCCTCGCAAGTGAGCGGAGTGATGAAGGAGAGAGTGCTGCA
GCGGAGTGTGGAGCTTTCCTGGCAGGAACCAGAACATCCCAACGGAGTCATCACGGAATATGAA
ATCAAGTATTATGAGAAAGATCAAAGAGAAAGGACGTACTCAACACTGAAAACCAAGTCCACCT
CAGCCTCCATTAATAATCTGAAACCGGGAACAGTGTATGTTTTTCAGATCCGGGCGTTCACTGC
TGCCGGCTATGGAAATTACAGCCCTAGGCTGGATGTTGCAACACTAGAGGAAGCTTCAGGTAAA
ATGTTTGAAGCAACAGCGGTGTCCAGTGAACAGAATCCCGTCATCATAATTGCTGTGGTGGCTG
TAGCAGGGACCATCATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGG
TTACAGCAAGGCTGACCAAGAAGGGGATGAAGAACTCTACTTTCATTCTCTTTACAGGGAAAGG
GGAGAAGGGATGGGAAAGACACAGCACAATAGGAAGTGGATGATTGCATCGTGCTCTCTCTTTT
GTAGGTTTCTTTTTCTAATCAACACTATGATTTTTGAAGTACGCGAACGTGAAGCAAACATGGA
GAGATGAGGAATTAGCATTGTGAACCTGATTGTAATCCTCTCTTCCAGTAAGAGATGAGACGCT
ATTGCAGTGAGAATGTACAACTTGCTTGCA

hide sequence

RefSeq Acc Id:

XM_039109224 ⟹ XP_038965152

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,362 - 43,128,580 (+)	NCBI

RefSeq Acc Id:

XM_039109225 ⟹ XP_038965153

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,976,415 - 43,128,580 (+)	NCBI

RefSeq Acc Id:

XM_039109226 ⟹ XP_038965154

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,359 - 43,109,317 (+)	NCBI

RefSeq Acc Id:

XR_005504361

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	42,975,361 - 43,122,388 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_599158	(Get FASTA)	NCBI Sequence Viewer
	XP_006238024	(Get FASTA)	NCBI Sequence Viewer
	XP_006238025	(Get FASTA)	NCBI Sequence Viewer
	XP_006238026	(Get FASTA)	NCBI Sequence Viewer
	XP_006238027	(Get FASTA)	NCBI Sequence Viewer
	XP_038965152	(Get FASTA)	NCBI Sequence Viewer
	XP_038965153	(Get FASTA)	NCBI Sequence Viewer
	XP_038965154	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA86830	(Get FASTA)	NCBI Sequence Viewer
	AAA86831	(Get FASTA)	NCBI Sequence Viewer
	EDL98551	(Get FASTA)	NCBI Sequence Viewer
	EDL98552	(Get FASTA)	NCBI Sequence Viewer
	EDL98553	(Get FASTA)	NCBI Sequence Viewer
	EDL98554	(Get FASTA)	NCBI Sequence Viewer
	P54759	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_599158 ⟸ NM_134331
- Peptide Label:	precursor
- UniProtKB:	P54759 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVVQTRYPSWIILCYIWLLGFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPSGWEEISGLDEN YTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGAC IALVSVKVYYKKCWSIIENLAVFPDTVTGSEFSSLVEVRGTCVSSAEEEAENSPRMHCSAEGEW LVPIGKCICKAGYQQKGDTCEPCGRRFYKSSSQDLQCSRCPTHSFSDREGSSRCECEDGYYRAP SDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGS NIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSG VMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTLKTKSTSASINNLKPGTVYV FQIRAFTAAGYGNYSPRLDVATLEEASGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGF IIGRRHCGYSKADQEGDEELYFHFKFPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIG AGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRG KPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNS NLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSY GERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRN PSSLKTPLGTCSRPISPLLDQSTPDFTAFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTI DDVMSLGITLVGHQKKIMSSIQTMRAQMLHLHGTGIQV hide sequence

RefSeq Acc Id:

XP_006238027 ⟸ XM_006237965

- Peptide Label:

isoform X7

- Sequence:

show sequence

MVVQTRYPSWIILCYIWLLGFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPSGWEEISGLDEN
YTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY
ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGAC
IALVSVKVYYKKCWSIIENLAVFPDTVTGSEFSSLVEVRGTCVSSAEEEAENSPRMHCSAEGEW
LVPIGKCICKAGYQQKGDTCEPCGRRFYKSSSQDLQCSRCPTHSFSDREGSSRCECEDGYYRAP
SDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGS
NIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSG
VMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTLKTKSTSASINNLKPGTVYV
FQIRAFTAAGYGNYSPRLDVATLEEASGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGF
IIGRRHCGYSKADQEGDEELYFHSLYRERGEGMGKTQHNRKWMIASCSLFCRFLFLINTMIFEV
REREANMER

hide sequence

RefSeq Acc Id:

XP_006238024 ⟸ XM_006237962

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVVQTRYPSWIILCYIWLLGFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPSGWEEISGLDEN
YTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY
ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGAC
IALVSVKVYYKKCWSIIENLAVFPDTVTGSEFSSLVEVRGTCVSSAEEEAENSPRMHCSAEGEW
LVPIGKCICKAGYQQKGDTCEPCGRRFYKSSSQDLQCSRCPTHSFSDREGSSRCECEDGYYRAP
SDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGS
NIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSG
VMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTLKTKSTSASINNLKPGTVYV
FQIRAFTAAGYGNYSPRLDVATLEEASGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGF
IIGRRHCGYSKADQEGDEELYFHCTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEF
GEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVM
IVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVC
KVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP
YWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPSSL
KTPLGTCSRPISPLLDQSTPDFTAFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIDDVM
SLGITLVGHQKKIMSSIQTMRAQMLHLHGTGIQV

hide sequence

RefSeq Acc Id:

XP_006238025 ⟸ XM_006237963

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVVQTRYPSWIILCYIWLLGFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPSGWEEISGLDEN
YTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY
ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGAC
IALVSVKVYYKKCWSIIENLAVFPDTVTGSEFSSLVEVRGTCVSSAEEEAENSPRMHCSAEGEW
LVPIGKCICKAGYQQKGDTCEPCGRRFYKSSSQDLQCSRCPTHSFSDREGSSRCECEDGYYRAP
SDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGS
NIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSG
VMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTLKTKSTSASINNLKPGTVYV
FQIRAFTAAGYGNYSPRLDVATLEEASATAVSSEQNPVIIIAVVAVAGTIILVFMVFGFIIGRR
HCGYSKADQEGDEELYFHFKFPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFG
EVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMI
VIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCK
VSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY
WDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPSSLK
TPLGTCSRPISPLLDQSTPDFTAFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIDDVMS
LGITLVGHQKKIMSSIQTMRAQMLHLHGTGIQV

hide sequence

RefSeq Acc Id:	XP_006238026 ⟸ XM_006237964
- Peptide Label:	isoform X5
- UniProtKB:	P54759 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVVQTRYPSWIILCYIWLLGFAHTGEAQAAKEVLLLDSKAQQTELEWISSPPSGWEEISGLDEN YTPIRTYQVCQVMEPNQNNWLRTNWISKGNAQRIFVELKFTLRDCNSLPGVLGTCKETFNLYYY ETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGAC IALVSVKVYYKKCWSIIENLAVFPDTVTGSEFSSLVEVRGTCVSSAEEEAENSPRMHCSAEGEW LVPIGKCICKAGYQQKGDTCEPCGRRFYKSSSQDLQCSRCPTHSFSDREGSSRCECEDGYYRAP SDPPYVACTRPPSAPQNLIFNINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGS NIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSG VMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTLKTKSTSASINNLKPGTVYV FQIRAFTAAGYGNYSPRLDVATLEEASGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGF IIGRRHCGYSKADQEGDEELYFHSLVTNEHLSVL hide sequence

RefSeq Acc Id:

ENSRNOP00000009899 ⟸ ENSRNOT00000009899

RefSeq Acc Id:	XP_038965154 ⟸ XM_039109226
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038965152 ⟸ XM_039109224
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965153 ⟸ XM_039109225
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSRNOP00000082816 ⟸ ENSRNOT00000102430

Protein Domains

Eph LBD Fibronectin type-III Protein kinase SAM

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:70957	AgrOrtholog
Ensembl Genes	ENSRNOG00000007030	Ensembl, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000009899	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009899	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	2.60.120.260	UniProtKB/Swiss-Prot
	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	Eph_TM	UniProtKB/Swiss-Prot
	EphA7_rcpt_lig-bd	UniProtKB/Swiss-Prot
	Ephrin_rcpt_lig-bd_dom	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot
	Growth_fac_rcpt_cys_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
	Tyr_kinase_AS	UniProtKB/Swiss-Prot
	Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot
	Tyr_kinase_ephrin_rcpt	UniProtKB/Swiss-Prot
	Tyr_kinase_rcpt_V_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:171287	UniProtKB/Swiss-Prot
NCBI Gene	171287	ENTREZGENE
Pfam	EphA2_TM	UniProtKB/Swiss-Prot
	Ephrin_lbd	UniProtKB/Swiss-Prot
	fn3	UniProtKB/Swiss-Prot
	Pkinase_Tyr	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
PhenoGen	Epha7	PhenoGen
PIRSF	TyrPK_ephrin_receptor	UniProtKB/Swiss-Prot
PRINTS	TYRKINASE	UniProtKB/Swiss-Prot
PROSITE	EGF_2	UniProtKB/Swiss-Prot
	EPH_LBD	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_TYR	UniProtKB/Swiss-Prot
	RECEPTOR_TYR_KIN_V_1	UniProtKB/Swiss-Prot
	RECEPTOR_TYR_KIN_V_2	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
SMART	EPH_lbd	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	TyrKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
	SSF49785	UniProtKB/Swiss-Prot
	SSF56112	UniProtKB/Swiss-Prot
	SSF57184	UniProtKB/Swiss-Prot
UniProt	EPHA7_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-07-09	Epha7	Eph receptor A7			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	protein contains a cysteine rich region and tandem fibronectin type III domains in its extracellular portion	70732
gene_expression	mRNA is expressed in a developmentally-regulated fashion, restricted to nervous system in adult but more widely expressed in the embryo	70732
gene_product	member of the Eph-related receptor family, the largest subfamily of receptor tyrosine kinases	70732

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)