Alcrsp3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Alcrsp3 (Alcohol response QTL 3) Rattus norvegicus

Symbol: Alcrsp3
Name: Alcohol response QTL 3
RGD ID: 1641903
Also known as: Loss of righting reflex; LORR
Trait: response to alcohol trait   (VT:0010489)    
Measurement Type: duration of loss of righting reflex   (CMO:0002289)    
LOD Score: Likelihood Ratio: 12.9, for males Likelihood Ratio: 12.4, for females Likelihood Ratio: 6.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2512,689,285 - 57,689,285RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0513,288,888 - 58,288,888RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0517,946,863 - 62,946,863RGDRnor5.0
RGSC_v3.4513,886,258 - 58,886,258RGDRGSC3.4
RGSC_v3.1513,886,437 - 58,886,437RGD
Cross Type: intercross
Strains Crossed: LAS1 HAS1 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
ethanol  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
HAS1  (IEA)
LAS1  (IEA)

References

References - curated
1. Radcliffe RA, etal., Alcohol Clin Exp Res 2004 Dec;28(12):1796-804.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68428Aqp3aquaporin 3 (Gill blood group)55623920056244718Rat
61900Gabrr1gamma-aminobutyric acid type A receptor subunit rho 154752415147561228Rat
61946Pou3f2POU class 3 homeobox 253607793036083838Rat
69340Calb1calbindin 152937562429402532Rat
619748Cdh17cadherin 1752526282025314884Rat
2682Gghgamma-glutamyl hydrolase53352988033552790Rat
2380Coq3coenzyme Q3 methyltransferase53542956735460613Rat
69426Oprk1opioid receptor, kappa 151386001613877823Rat
621017LynLYN proto-oncogene, Src family tyrosine kinase51663951216755501Rat
2369Cnr1cannabinoid receptor 154840854348436099Rat
727868Nsmafneutral sphingomyelinase activation associated factor51951779519578773Rat
621332Il11ra1interleukin 11 receptor subunit alpha 155693182456941408Rat
621420Nbnnibrin52945957429494152Rat
620694Smu1SMU1, DNA replication regulator and spliceosomal factor55585669155875262Rat
620199Mmp16matrix metallopeptidase 1653131228031556276Rat
70905Ccnccyclin C53526682835284943Rat
3025Lypla1lysophospholipase 151467960514708774Rat
621595Vcpvalosin-containing protein55721016757229571Rat
620942Dnaja1DnaJ heat shock protein family (Hsp40) member A155584241455853326Rat
631423Tp53inp1tumor protein p53 inducible nuclear protein 152425398624272250Rat
621497Sdcbpsyndecan binding protein51947349919517188Rat
628740Aptxaprataxin55579889655822963Rat
68364Sigmar1sigma non-opioid intracellular receptor 155690415556907012Rat
620436Cgaglycoprotein hormones, alpha polypeptide54948691549499192Rat
628753Pnrc1proline-rich nuclear receptor coactivator 154764707047657832Rat
620327Maneamannosidase, endo-alpha54019637340218534Rat
1303188Spink4serine peptidase inhibitor, Kazal type 455605310456065029Rat
620104Gdf6growth differentiation factor 652299624623012567Rat
1307056Fhl5four and a half LIM domains 553890794138956759Rat
70999Decr12,4-dienoyl-CoA reductase 152941117229439054Rat
735162Ndufaf4NADH:ubiquinone oxidoreductase complex assembly factor 453860516938610341Rat
3915Ttpaalpha tocopherol transfer protein53349753733518936Rat
619723Unc13bunc-13 homolog B55728899957504110Rat
2019Aco1aconitase 155525984155315872Rat
621037Rps20ribosomal protein S2051681931316820475Rat
708548Necab1N-terminal EF-hand calcium binding protein 152835785928578642Rat
2145Aqp7aquaporin 755617164956186642Rat
620393Pdp1pyruvate dehydrogenase phosphatase catalytic subunit 152544684325455107Rat
70957Epha7Eph receptor A754297535343128703Rat
619955Fut9fucosyltransferase 953935181539565256Rat
2482Cyp7a1cytochrome P450 family 7 subfamily A member 151937697919386676Rat
1304660Ccl27C-C motif chemokine ligand 2755694140256948511Rat
1305203Bag1BAG cochaperone 155606849456081075Rat
61931Zfp292zinc finger protein 29254938417749468177Rat
1304693Mms22lMMS22-like, DNA repair protein53819770738313745Rat
1306323Osgin2oxidative stress induced growth inhibitor family member 252950040629519340Rat
1305917Npbwr1neuropeptides B and W receptor 151349542613496415Rat
1304709Ca8carbonic anhydrase 852130294021402395Rat
1304796Mrpl15mitochondrial ribosomal protein L1551472996614741276Rat
3103MosMOS proto-oncogene, serine/threonine kinase51685995716861264Rat
1306394Mdn1midasin AAA ATPase 154705543547190426Rat
1305828Dpy19l4dpy-19 like 452435128924410932Rat
620900B4galt1beta-1,4-galactosyltransferase 155593561455982461Rat
1306900Atp6v0d2ATPase H+ transporting V0 subunit D253333625733385354Rat
1305067Ube2j1ubiquitin-conjugating enzyme E2, J154742251347441476Rat
1307453Dnajb5DnaJ heat shock protein family (Hsp40) member B555717684057185492Rat
1305186Ubap1ubiquitin-associated protein 155652072256561153Rat
1308557Ubxn2bUBX domain protein 2B51930363419333181Rat
1305724Fbxl4F-box and leucine-rich repeat protein 453595580136029446Rat
1307386GemGTP binding protein overexpressed in skeletal muscle52521430925225222Rat
1307723Kif24kinesin family member 2455656101956628040Rat
1306455Bpnt23'(2'), 5'-bisphosphate nucleotidase 251777568417802570Rat
68323Rab2aRAB2A, member RAS oncogene family52167621921738833Rat
1307395PnisrPNN interacting serine and arginine rich protein53539596535422852Rat
1306460Gpr63G protein-coupled receptor 6353867254838727224Rat
1310007RragdRas-related GTP binding D54737390247409369Rat
1310024Otud6bOTU deubiquitinase 6B52818199228214486Rat
1305158Smim8small integral membrane protein 854933661749345625Rat
1305371Sox17SRY-box transcription factor 1751501666015022228Rat
1307791Akirin2akirin 254910823149122566Rat
1307783Ccne2cyclin E252428507824298258Rat
1305419Rars2arginyl-tRNA synthetase 2, mitochondrial54918151749238664Rat
1306576Rpp25lribonuclease P/MRP subunit p25 like55687842056879956Rat
708566St18ST18 C2H2C-type zinc finger transcription factor51258249312914221Rat
1309438Map3k7mitogen activated protein kinase kinase kinase 754635697346415597Rat
1310178Cpne3copine 353301465833064004Rat
1308033Nol6nucleolar protein 655625991956270540Rat
1309547Dctn3dynactin subunit 355688108556889041Rat
1310364Klhl32kelch-like family member 3253832123738568453Rat
1311717Ubap2ubiquitin-associated protein 255634824356437403Rat
1309880Tcea1transcription elongation factor A151463145414668769Rat
1310455Toxthymocyte selection-associated high mobility group box51987499420171272Rat
1311249Fam214bfamily with sequence similarity 214, member B55726083957274524Rat
1311354Ndufb6NADH:ubiquinone oxidoreductase subunit B655540054355410110Rat
1311359Slc35a1solute carrier family 35 member A154922559949248405Rat
1310846Slc26a7solute carrier family 26 member 752788440028021865Rat
1310336Ccl19C-C motif chemokine ligand 1955696336456965308Rat
1309085Ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 652414771224171981Rat
1310773Lingo2leucine rich repeat and Ig domain containing 255037074451687252Rat
1311996Ccl21C-C motif chemokine ligand 2155698055756981661Rat
1312000Asphaspartate-beta-hydroxylase52260387922814107Rat
1312029Plekhf2pleckstrin homology and FYVE domain containing 252409107724106758Rat
1309045Ifnkinterferon kappa54973207349734281Rat
1309006Tmem68transmembrane protein 6851649405416524842Rat
1311633Slc7a13solute carrier family 7 member 1353327741633298105Rat
1310976Usp45ubiquitin specific peptidase 4553531862135392090Rat
1560696Mob3bMOB kinase activator 3B54954180449737934Rat
1549780Xkr4XK related 451589618816297733Rat
1310641Cfap206cilia and flagella associated protein 20654925439949299145Rat
1306507Rad54bRAD54 homolog B52503088525104616Rat
1309460Ddx58DEXD/H-box helicase 5855532122955369947Rat
1311410RngttRNA guanylyltransferase and 5'-phosphatase54770692947913297Rat
1306483Galtgalactose-1-phosphate uridylyltransferase55692703956930284Rat
1305490Runx1t1RUNX1 partner transcriptional co-repressor 152718767427338070Rat
1306225Pip4p2phosphatidylinositol-4,5-bisphosphate 4-phosphatase 252825982128307225Rat
1309308Ufl1Ufm1-specific ligase 153896272138995134Rat
1309498Pigophosphatidylinositol glycan anchor biosynthesis, class O55724472157256252Rat
1305968Chmp5charged multivesicular body protein 555608138556098529Rat
1309821Myorgmyogenesis regulating glycosidase55665425756664467Rat
1309630Gja10gap junction protein, alpha 1054699496447002902Rat
1307853Pm20d2peptidase M20 domain containing 254756605947586334Rat
1309346Rb1cc1RB1-inducible coiled-coil 151316164813225560Rat
1305771Casp8ap2caspase 8 associated protein 254701450147052276Rat
1308285Stoml2stomatin like 255725622757259824Rat
1307658Rbm12bRNA binding motif protein 12B52559740525610324Rat
1310277Nfx1nuclear transcription factor, X-box binding 155610494556162912Rat
1308457Orc3origin recognition complex, subunit 354912375849181552Rat
1310681Cibar1CBY1 interacting BAR domain containing 152561399325632440Rat
1305270ToporsTOP1 binding arginine/serine rich protein, E3 ubiquitin ligase55538803355399937Rat
1309167Ripk2receptor-interacting serine-threonine kinase 252963080629662804Rat
1305286Plag1PLAG1 zinc finger51690205716956727Rat
1309953Tgs1trimethylguanosine synthase 151652486416558399Rat
1310592Ints8integrator complex subunit 852429554224344642Rat
1306195RGD1306195similar to RAN protein55445600554457381Rat
1311734Wwp1WW domain containing E3 ubiquitin protein ligase 153309237933185887Rat
1559864Phf24PHD finger protein 2455714342857171054Rat
1562865Bach2BTB domain and CNC homolog 254663233846982676Rat
1561387Fam205cfamily with sequence similarity 205, member C55708730557093191Rat
1560481Esrp1epithelial splicing regulatory protein 152442761124482157Rat
1562060Sdr16c6short chain dehydrogenase/reductase family 16C, member 651709520817118713Rat
68946Penkproenkephalin51718379917189160Rat
1562449Faxcfailed axon connections homolog, metaxin like GST domain containing53548013735539741Rat
1562450Atp6v1hATPase H+ transporting V1 subunit H51437902914484703Rat
1563403Fam110bfamily with sequence similarity 110, member B51878936218929647Rat
1560284Spaca1sperm acrosome associated 154852540648540676Rat
1311921Chd7chromodomain helicase DNA binding protein 752181200721995358Rat
1561162Srsf12serine and arginine rich splicing factor 1254760652647631509Rat
1565671Dnai1dynein, axonemal, intermediate chain 155673017956800926Rat
1563085Rmdn1regulator of microtubule dynamics 153307026733093922Rat
1560994Gm5471predicted pseudogene 547152109854621099214Rat
1564278RGD1564278similar to splicing-related factor RNPS152462980724632144Rat
1561916RGD1561916similar to testes development-related NYD-SP22 isoform 155666616056678799Rat
1359108RGD1359108similar to RIKEN cDNA 3110043O2154976634049791434Rat
1562265RGD1562265similar to ribosomal protein S1254361254543612943Rat
1560943Arid3cAT-rich interaction domain 3C55689004256895888Rat
1303100Cntfrciliary neurotrophic factor receptor55682344856861075Rat
1559904Virmavir like m6A methyltransferase associated52496120825024660Rat
1549749Cfap418cilia and flagella associated protein 41852399639524015609Rat
1563056RGD1563056similar to hypothetical protein54931678449329164Rat
1559441RGD1559441similar to MIC2L152472267224769149Rat
1303023Nudt2nudix hydrolase 255662826556643104Rat
1586167Tmem67transmembrane protein 6752553645825589378Rat
1586081LOC366349similar to 60S ribosomal protein L23a54950771649508319Rat
1586082LOC366345similar to BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 isoform beta54827942748281466Rat
1586088LOC366320similar to GA binding protein transcription factor, beta subunit 2 isoform beta 252959621329605030Rat
1586091LOC366312similar to 60S ribosomal protein L1152413611524136752Rat
1586092LOC366310pseudogene for small nuclear RNA U3 (H3.9)52206501822065142Rat
1585101LOC691313similar to Caspase-3 precursor (CASP-3) (Apopain) (Cysteine protease CPP32) (Yama protein) (CPP-32) (SREBP cleavage activity 1) (SCA-1) (LICE) (IRP)53455824334559081Rat
1586095LOC366301similar to proteasome 26S non-ATPase subunit 1251362624113708195Rat
1583731Ankrd6ankyrin repeat domain 654719798147343183Rat
1583733Lrrc69leucine rich repeat containing 6952802359128181963Rat
1584099LOC688867similar to cisplatin resistance-associated overexpressed protein54965348749655419Rat
1563572Tstd3thiosulfate sulfurtransferase like domain containing 353529465235304101Rat
1586797Capns1-ps1calpain, small subunit 1, pseudogene 155029456450297529Rat
1586399LOC689901similar to TGF beta-inducible nuclear protein 153789234137897149Rat
1586146Rgs20regulator of G-protein signaling 2051448432014614321Rat
1565999Sdr16c5short chain dehydrogenase/reductase family 16C, member 551701881317043974Rat
1564200Clvs1clavesin 152240838422604281Rat
1564981RGD1564981similar to Nonspecific lipid-transfer protein, mitochondrial precursor (NSL-TP)51660859516609025Rat
1565364Cngb3cyclic nucleotide gated channel subunit beta 353274698832995121Rat
1563301RGD1563301similar to 40S ribosomal protein S1652152477121525259Rat
1583530Alkal1ALK and LTK ligand 151301972913049913Rat
1563405RGD1563405similar to protein tyrosine phosphatase 4a251753051517532157Rat
1561260Triqktriple QxxK/R motif containing52639151126464422Rat
1565372RGD1565372similar to Ubiquitin-conjugating enzyme E2 C (Ubiquitin-protein ligase C)51899814819001967Rat
1565647Cyld-ps1cylindromatosis (turban tumor syndrome), pseudogene 151520207415205290Rat
1565988RGD1565988similar to Chain A, Bhmt From Rat Liver53036296530390524Rat
1586080LOC366355similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)55313501053136103Rat
1588668Fam219afamily with sequence similarity 219, member A55667927256729959Rat
1592300Cnbd1cyclic nucleotide binding domain containing 153223400332606765Rat
1592281LOC689481similar to ribosomal protein S1255696719256987008Rat
1592194LOC690770similar to heterogeneous nuclear ribonucleoprotein K55181298851817585Rat
1591027LOC690801similar to heat shock protein 855316325753165307Rat
1588818LOC688470similar to ribosomal protein L2452454271424543178Rat
1587477FancgFA complementation group G55723028757240067Rat
1589861Tmem215transmembrane protein 21555561256855615828Rat
1589883Prdm13PR/SET domain 1353522081535233641Rat
1589795LOC690990similar to 60S ribosomal protein L23a55651206356512765Rat
1590957LOC690877hypothetical protein LOC69087755545244255453652Rat
1589840LOC690941similar to ribosomal protein L2455578299955783468Rat
1589948LOC689630hypothetical protein LOC68963053510828035108914Rat
1584049LOC690119similar to ADP-ribosylation factor-like protein 654284114642841746Rat
1585166LOC690046hypothetical protein LOC69004654026254740295229Rat
1587460Atp8b5pATPase, class I, type 8B, member 5, pseudogene55750589757620065Rat
61902Gabrr2gamma-aminobutyric acid type A receptor subunit rho 254744528047489929Rat
1592688Rusc2RUN and SH3 domain containing 255762839757675524Rat
1592689Chchd7coiled-coil-helix-coiled-coil-helix domain containing 751695708116969388Rat
1596535LOC683961similar to ribosomal protein S1355645712156457669Rat
1596128Tmem64transmembrane protein 6452869894728745384Rat
1597419LOC689067similar to DnaJ-like protein 252781036927811537Rat
1595256Sumo4small ubiquitin-like modifier 451509932215099913Rat
1594034Dcaf12DDB1 and CUL4 associated factor 1255646041856482171Rat
1593494LOC689370similar to Eukaryotic translation initiation factor 5 (eIF-5)53067638330677491Rat
1594826Ube2r2ubiquitin-conjugating enzyme E2R 255628660456345160Rat
1591051Nkain3Sodium/potassium transporting ATPase interacting 353361372034310090Rat
1597334Lyrm2LYR motif containing 254719819247200470Rat
1593555LOC689308similar to cyclic nucleotide gated cation channel52971705229718455Rat
1597763LOC685119similar to DnaJ (Hsp40) homolog, subfamily B, member 651687884816879742Rat
1596713Rp1RP1, axonemal microtubule associated51512110415582363Rat
1594682LOC690581similar to chondroitin sulfate GalNAcT-254892507248927897Rat
1594697LOC690563similar to SET translocation54889456548895728Rat
1596418LOC685279similar to zinc finger protein 65251787251017899024Rat
2301013Sec61glSEC61 gamma subunit-like55558521355585625Rat
2318060Fam166bfamily with sequence similarity 166, member B55767553757680133Rat
2318103LOC100362485NHP2 ribonucleoprotein homolog51392485214056332Rat
2318778LOC100362104mitochondrial ribosomal protein L3052944778629448371Rat
2320072LOC100361493hypothetical LOC10036149352514896325152683Rat
2318973LOC100362007protein phosphatase 1, catalytic subunit, gamma-like53045623330458067Rat
2321337LOC100360821rCG55159-like55719993157203964Rat
2321393LOC100364265ribosomal protein L19-like51688089916898782Rat
2321512LOC100360746adaptor-related protein complex AP-4, sigma 151908004319081080Rat
2323083LOC100359962mitochondrial malate dehydrogenase-like55067273950676819Rat
2322518LOC100360232hypothetical LOC10036023254222778342228049Rat
2322670LOC100360179zinc finger, FYVE domain containing 20-like55279522552797778Rat
2321121LOC100360939rCG21417-like52378676823787484Rat
2320471Fam205afamily with sequence similarity 205, member A55706573957071880Rat
2324327LOC100362631PEST proteolytic signal containing nuclear protein-like53584625835848205Rat
2324520LOC100362534K(lysine) acetyltransferase 2B-like53542640735428184Rat
2325356Mir873microRNA 87355135691951356995Rat
2325370Mir207microRNA 20755584280655842883Rat
2325412Mir876microRNA 87655133719151337269Rat
2324828LOC100363061proteasome 26S non-ATPase subunit 152208005922092892Rat
6487307LOC100912373uncharacterized LOC10091237352833016728355691Rat
6495230LOC10091102340S ribosomal protein S23-like52451555924516265Rat
6486737LOC100912510uncharacterized LOC10091251051719041417192458Rat
6487582Enhoenergy homeostasis associated55680098056802777Rat
6492721LOC100911464glutathione S-transferase P-like53858666738592201Rat
6490958LOC10091177140S ribosomal protein S6-like54031268240313404Rat
6502160LOC100909766peptidyl-prolyl cis-trans isomerase D-like51852878218540240Rat
6495713LOC10091099440S ribosomal protein S18-like53514547535145950Rat
6499463LOC100910222ubiquitin-40S ribosomal protein S27a-like54891664348917100Rat
6501591LOC100909800guanine nucleotide-binding protein subunit beta-2-like 1-like51898710018990913Rat
7526543LOC102551006uncharacterized LOC10255100652158814221628171Rat
7504318LOC102555886ribonuclease P protein subunit p38-like54744411947445294Rat
7530658LOC102549334uncharacterized LOC10254933454369784143757417Rat
7513176LOC102553820uncharacterized LOC10255382053608558836089407Rat
7520008LOC102551110uncharacterized LOC10255111054661950146637446Rat
7651324LOC102555980uncharacterized LOC10255598054749277147502403Rat
7637993LOC102552817uncharacterized LOC10255281751497160815016234Rat
7653207LOC102551372uncharacterized LOC10255137252174906421759653Rat
7638920LOC102552309uncharacterized LOC10255230952515280525154273Rat
7640679LOC102549899uncharacterized LOC10254989951943565319454889Rat
7641478LOC10254923060S ribosomal protein L10a-like54973891149739989Rat
7657583LOC102549876uncharacterized LOC10254987654958355049587920Rat
7629665LOC102555924uncharacterized LOC10255592452406921124077248Rat
7611658Fsbpfibrinogen silencer binding protein52505800325064283Rat
7618446LOC102549737uncharacterized LOC10254973751325044113272830Rat
7573312LOC102557269uncharacterized LOC10255726954979119149864621Rat
7573721Smim27small integral membrane protein 2755539869655400308Rat
7556989LOC102557253igE-binding protein-like53263950232645632Rat
7604960LOC102547431uncharacterized LOC10254743152426982624283178Rat
7551556LOC102553821uncharacterized LOC10255382155667907056684701Rat
7586726LOC102552692uncharacterized LOC10255269252567482125715582Rat
7708268LOC102553889uncharacterized LOC10255388952806173828076577Rat
7711861LOC102549805uncharacterized LOC10254980551328171613326776Rat
7731407LOC102552377uncharacterized LOC10255237752527333925289529Rat
7670634LOC102547621uncharacterized LOC10254762155695297756960366Rat
7747666LOC102546982alpha-enolase-like52453842024540101Rat
7729019LOC102552020uncharacterized LOC10255202052204894322052627Rat
9135524LOC103695239uncharacterized LOC10369523952455805624608755Rat
9196141LOC103692307protein SON-like51846947618473456Rat
9116417LOC103692302uncharacterized LOC10369230252467117324720087Rat
9082336LOC103692331uncharacterized LOC10369233154845049948520234Rat
9225019LOC10369524660S ribosomal protein L39-like53864218238642839Rat
9272632LOC103692300uncharacterized LOC10369230052291604222921564Rat
9323738LOC103695237uncharacterized LOC10369523751619288716195997Rat
9283972LOC103692326uncharacterized LOC10369232654599237845995040Rat
9297465LOC103692338putative thymosin beta-4-like protein 655731945957319811Rat
9302605LOC103692303uncharacterized LOC10369230352483066924855700Rat
9472653LOC103692301uncharacterized LOC10369230152480548324812407Rat
9434881LOC103692341gamma-glutamylaminecyclotransferase-like54734324847355132Rat
9435428LOC103692329eukaryotic initiation factor 4A-I pseudogene54775341147754665Rat
9444073LOC103692317histone deacetylase 1 pseudogene53406494734076063Rat
9453420LOC103692336uncharacterized LOC10369233655680576556817066Rat
9685089Lnc056long non-coding RNA 05652216267422163117Rat
11434367LOC108350932uncharacterized LOC10835093252410676124123754Rat
11472967LOC10835112160S ribosomal protein L29 pseudogene52753782727538390Rat
11360528LOC108350948uncharacterized LOC10835094854769506447706817Rat
11444056LOC108350937ferritin light chain 1 pseudogene52843074328431569Rat
11457499LOC108351089heterogeneous nuclear ribonucleoprotein A1-like55365434253655308Rat
11436894LOC108350951uncharacterized LOC10835095154906192649094913Rat
11366942LOC10835108560S ribosomal protein L13 pseudogene53319174133201352Rat
11449903LOC108350931uncharacterized LOC10835093152222723222235944Rat
11439912LOC108350950uncharacterized LOC10835095054827279048371017Rat
11452394LOC108350953small ubiquitin-related modifier 2 pseudogene54948279049483777Rat
11453663LOC108350924uncharacterized LOC10835092451804101118060823Rat
11385100LOC108350923uncharacterized LOC10835092351430730214312194Rat
11374185LOC108350929uncharacterized LOC10835092952190195421930923Rat
11375408LOC108350928uncharacterized LOC10835092852157041721574912Rat
11398296LOC108350949uncharacterized LOC10835094954783364147845926Rat
11398785LOC10835112060S ribosomal protein L17 pseudogene52746049327461058Rat
11388087LOC108350944uncharacterized LOC10835094454631252546332473Rat
11389431LOC108350947uncharacterized LOC10835094754741423947422384Rat
11400924Trnas-aga1transfer RNA serine (anticodon AGA) 152399628823996369Rat
11404702LOC108351088uncharacterized LOC10835108855421856054219234Rat
11503786LOC108351119ferritin light chain 1 pseudogene52414242024143026Rat
11480254LOC108351124uncharacterized LOC10835112454378010443783053Rat
11505979LOC108350952uncharacterized LOC10835095254906238049063472Rat
11517012LOC108351080endogenous retrovirus group K member 9 Pol protein-like51373648313737690Rat
11517987LOC10835108140S ribosomal protein S18 pseudogene52206558922074840Rat
41281883LOC120102821uncharacterized LOC12010282152237056722384103Rat
41322375LOC120102845uncharacterized LOC12010284553609136236095251Rat
41355203LOC120102838uncharacterized LOC12010283852966282929715416Rat
41277993NEWGENE_6576114transfer RNA threonine (anticodon AGU)52693417726934249Rat
41324050LOC120102828uncharacterized LOC12010282852430018124317387Rat
41384122LOC120103054serine/arginine-rich splicing factor 3-like51873441318734925Rat
41114642LOC120103224U1 spliceosomal RNA52284666122846823Rat
41114922LOC120103328small nucleolar RNA SNORA1752751011927510246Rat
41358655LOC12010305760S ribosomal protein L6-like54259253142593424Rat
41142696LOC120103375U4 spliceosomal RNA52160213121602278Rat
41253648LOC120103271small nucleolar RNA SNORA1552933447529334604Rat
41327246LOC120103060uncharacterized LOC12010306055628697356300346Rat
41359748LOC120103345small nucleolar RNA SNORA1752095404020954161Rat
41092501LOC120102859putative 60S ribosomal protein L39-like 555731859057318749Rat
41145764LOC120103388U6 spliceosomal RNA54068212540682231Rat
41208256LOC120103326small nucleolar RNA SNORA1752940795329408081Rat
41209789LOC120103334small nucleolar RNA SNORA1752765310727653215Rat
41362403LOC120102818eukaryotic translation elongation factor 1 epsilon-1-like51945564319457562Rat
41388173LOC120102831WD repeat and SOCS box-containing protein 1-like52488168824891528Rat
41174538LOC120102837tubulin alpha-1D chain-like52951187629518964Rat
41389895LOC120103067tubulin alpha-1A chain-like55290789152911653Rat
41390808LOC120103319small nucleolar RNA SNORA1751684576216845890Rat
41120437LOC120102815uncharacterized LOC12010281551673192316761548Rat
41149442LOC120102848uncharacterized LOC12010284854604083146066269Rat
41188737LOC120102826uncharacterized LOC12010282652401469424029945Rat
41262738LOC120103208U6 spliceosomal RNA54304813943048245Rat
41330287LOC120103245U7 small nuclear RNA55508991255089976Rat
41121936LOC120102814uncharacterized LOC12010281451497213414983916Rat
41192036LOC120103344U2 spliceosomal RNA54842749848427636Rat
41394701LOC120102847uncharacterized LOC12010284754485879044922780Rat
41395404LOC120103059uncharacterized LOC12010305951628400116429252Rat
41100894LOC120102832RNA-binding protein 12B-A-like52559050025597273Rat
41101046LOC120102830uncharacterized LOC12010283052486926424872255Rat
41124986LOC120103374U4 spliceosomal RNA53356421533564342Rat
41193020LOC120103357small nucleolar RNA SNORD121A55636700956367089Rat
41102124LOC120102839importin subunit alpha-1-like53044913630455949Rat
41194781LOC120103371U4 spliceosomal RNA54974815649748295Rat
41194899LOC120103068SUMO-conjugating enzyme UBC9-like55567970855692106Rat
41347757LOC120102819ras GTPase-activating protein-binding protein 1-like51973493319737218Rat
41069886LOC120103194U6 spliceosomal RNA54755397647554081Rat
41102833LOC120103292small nucleolar RNA SNORA4853517650435176637Rat
41195959LOC120102834uncharacterized LOC12010283452716768927188550Rat
41270715LOC120103066putative E3 ubiquitin-protein ligase UBR754951026449512757Rat
41373051LOC120102855uncharacterized LOC12010285555536968155370818Rat
41185977LOC120102856uncharacterized LOC12010285655551486355520852Rat
41271580LOC120103296small nucleolar RNA SNORA1754935856049358689Rat
41350556LOC120103214U6 spliceosomal RNA52234882522348930Rat
41081239LOC120102827uncharacterized LOC12010282752403682024043057Rat
41162930LOC120103359small nucleolar RNA SNORD121A55635624356356319Rat
41162947LOC12010314540S ribosomal protein S20-like53880265738803367Rat
41272850LOC120102857uncharacterized LOC12010285755694557756952969Rat
41294123LOC120102854uncharacterized LOC12010285455214079152143955Rat
41294829LOC120103330small nucleolar RNA SNORA1754253603042536158Rat
41352216LOC120102849uncharacterized LOC12010284954659689946619460Rat
41108305LOC12010281360 kDa heat shock protein, mitochondrial-like51449799614499931Rat
41164079LOC120102860uncharacterized LOC12010286055753872457568537Rat
41164745LOC120103360small nucleolar RNA U5451681994516820012Rat
41133959LOC120103304small nucleolar RNA SNORA1753928202539282156Rat
41166424LOC120103363U2 spliceosomal RNA52849750128497630Rat
40972884LOC120102833uncharacterized LOC12010283352646198526467263Rat
40976711LOC120102817uncharacterized LOC12010281751808972818103756Rat
40976841NEWGENE_40933816transfer RNA valine (anticodon AAC)54908089349080965Rat
40927816LOC120103142uncharacterized LOC12010314252423019924231625Rat
40956040LOC120103055protein BEX4-like52862147428684995Rat
40980997LOC120102858uncharacterized LOC12010285855740698657422319Rat
41001063LOC120103384U6 spliceosomal RNA51537542215375528Rat
40985493LOC120103329small nucleolar RNA SNORA1753599237635992505Rat
41006368LOC120103311U2 spliceosomal RNA54123388541233967Rat
41007842LOC120103346small nucleolar RNA SNORA1755737819257378303Rat
40938154LOC120102824uncharacterized LOC12010282452301332023022049Rat
41008049LOC120102812uncharacterized LOC12010281251332942413361574Rat
40939148LOC120103320small nucleolar RNA SNORA1751883011718830241Rat
40940830LOC120103220U6 spliceosomal RNA55618933456189452Rat
40965561LOC120103061uncharacterized LOC12010306155648534456491627Rat
40941923LOC120102836uncharacterized LOC12010283652871884128768110Rat
40944019LOC120103219U6 spliceosomal RNA53105101031051115Rat
40969773LOC120103351small nucleolar RNA SNORA2653828552538285644Rat
41046326LOC120103295small nucleolar RNA SNORA1751981437419814505Rat
41074835LOC120103248U7 small nuclear RNA53878275638782820Rat
41243557LOC120103056wee1-like protein kinase 253555171635553140Rat
41075750LOC120103316small nucleolar RNA SNORA1753460649634606629Rat
41076057LOC120103294small nucleolar RNA SNORA1754810633948106470Rat
41312846LOC120103244U7 small nuclear RNA53215196932152031Rat
41313046LOC120103226U6 spliceosomal RNA54858804548588141Rat
41025792LOC120102816uncharacterized LOC12010281651769069117736386Rat
41077767LOC120103251small nucleolar RNA SNORD7351869202518692080Rat
41078263LOC120103367small nucleolar RNA U354937190549372024Rat
41246143LOC120103221U6 spliceosomal RNA55554495855545064Rat
41316018LOC120103215U6 spliceosomal RNA55046074850460853Rat
41052978LOC120103297small nucleolar RNA SNORA1751773591417736044Rat
41134945LOC120102842uncharacterized LOC12010284253526381335266767Rat
41248460LOC120102853uncharacterized LOC12010285354837353548403687Rat
41256844LOC120102846uncharacterized LOC12010284654308424543103773Rat
41055096LOC120102823uncharacterized LOC12010282352269711922704317Rat
41151486LOC120103355U2 spliceosomal RNA54409051344090680Rat
41257904LOC120103382U6 spliceosomal RNA55460119254601298Rat
41335677LOC120103222U6 spliceosomal RNA53903012139030224Rat
41317448LOC120103335small nucleolar RNA SNORA1753887785038877982Rat
41032391NEWGENE_40926764transfer RNA proline (anticodon AGG)53214375232143824Rat
41222336LOC120102840partner of Y14 and mago-like53314213433146238Rat
41222628LOC120102844uncharacterized LOC12010284453583956535843140Rat
41314783LOC120102829hsc70-interacting protein-like52468005024684165Rat
41035118LOC120103058uncharacterized LOC12010305851601108516015518Rat
41226688LOC120102835uncharacterized LOC12010283552755964727586169Rat
41301908LOC120103143chromatin target of PRMT1 protein-like52491451624919438Rat
41302224LOC120102850uncharacterized LOC12010285054693292946937124Rat
41038477LOC120103270small nucleolar RNA SNORA851321464613214785Rat
41063004LOC120102825uncharacterized LOC12010282552402767024031806Rat
41227498LOC120103358small nucleolar RNA SNORD121A55636927856369356Rat
41016461LOC120102852uncharacterized LOC12010285254746852847472049Rat
41305661LOC120102841uncharacterized LOC12010284153514989835192551Rat
41040765LOC120102820uncharacterized LOC12010282052224295322247572Rat
41237335LOC120103146uncharacterized LOC12010314654643085646432860Rat
41307010LOC120103144uncharacterized LOC12010314452903259729047722Rat
41020171LOC120102822uncharacterized LOC12010282252265484222679142Rat
41020351LOC120103356U6atac minor spliceosomal RNA52500862725008726Rat
41044339LOC120102851uncharacterized LOC12010285154699298847009537Rat
41021982LOC12010284360S ribosomal protein L30-like53538183235382175Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34047D5Mit113655596227855962414Ratregion
34212D5Mgh518154372665643726832Ratregion
34387D5Mgh1719951452922514529436Ratregion
34469D5Mgh311952459887824598989Ratregion
34469D5Mgh311952459887824598989Ratregion
34469D5Mgh311952458344324583550Ratregion
34469D5Mgh311952458344324583550Ratregion
34481D5Mgh2812352483880224838943Ratregion
34501D5Mgh2614855580560655805750Ratregion
34599D5Mit1823651718969817189930Ratregion
34639D5Pas131052614166926141981Ratregion
33678D5Mit1010055571562255715708Ratregion
36113D5Rat116353473011634730278Ratregion
36255D5Rat18913252381251823812651Ratregion
36279D5Rat415254786906247869213Ratregion
36946D5Rat717655571562655715787Ratregion
37992D5Rat10223855686914956869389Ratregion
36618D5Rat216853793984237939998Ratregion
34837D5Rat5217454784548347845673Ratregion
35076D5Rat614855045536850455513Ratregion
35767D5Rat515854983094949831125Ratregion
39722D5Rat13423055032855150328767Ratregion
39756D5Rat12320751861599218616199Ratregion
39780D5Rat12719852660778426607972Ratregion
40414D5Rat20712552093858720938712Ratregion
40716D5Rat12411651887394718874051Ratregion
38548D5Rat8224054404503444045280Ratregion
38746D5Rat11719655327483853275044Ratregion
39992D5Rat21024952351305623513295Ratregion
40250D5Rat12523451739773617397969Ratregion
40330D5Rat13014553166378931663928Ratregion
39160D5Rat7323752483871024838943Ratregion
39186D5Rat7024953518915335189418Ratregion
39338D5Rat20922952250984722510074Ratregion
39338D5Rat20922952250972222510074Ratregion
42190D5Arb1823452972406229724324Ratregion
42313D5Rat24920152123768721237888Ratregion
42314D5Rat25023853370151833701740Ratregion
42315D5Rat25120453675380236754006Ratregion
42316D5Rat25320154492654444926750Ratregion
42317D5Rat25220154406941944069621Ratregion
42318D5Rat25414354959378349593924Ratregion
42734D5Rat21810052316678023166901Ratregion
42737D5Rat19122553556320335563429Ratregion
42738D5Rat22020253348711933487295Ratregion
41350D5Rat13215254012830740128459Ratregion
41480D5Rat12827852450887524509116Ratregion
41480D5Rat12827852450880624509116Ratregion
40800D5Rat12620952404790024048109Ratregion
41072D5Rat13320354779785647798053Ratregion
41104D5Rat13521655668076356680977Ratregion
41728D5Rat18820451817359018173792Ratregion
43232D1Got6813855274058152742270Ratregion
43874D5Got11212652333204623332172Ratregion
43875D5Got10913052307306223073192Ratregion
43876D5Got13518652138987621390062Ratregion
43891D6Got3620253566775035667952Ratregion
60623D8Got2521552849399828494213Ratregion
60493D5Got7218753869621938696406Ratregion
60752D5Rat24724351402600914026245Ratregion
60523D6Got19612655343686153436987Ratregion
69542D5Uwm821851278975112789935Ratregion
69543D5Uwm913951635002416350163Ratregion
69544D5Uwm1012151499583414995947Ratregion
69546D5Uwm1215752726873627268904Ratregion
69548D5Uwm1320253725264437252890Ratregion
69551D5Uwm1429654700298247003274Ratregion
69553D5Uwm5119753335046833350661Ratregion
69572D5Uwm5814951479387814794021Ratregion
625790D5Got11119152323022623230415Ratregion
66416D5Mco529052354577523546079Ratregion
66441D5Uia1125655056113550561391Ratregion
66634D5Mco1326855634017456340467Ratregion
66634D5Mco1326855634017456340449Ratregion
66655D5Mco2116155101540851015571Ratregion
66658D5Mco2327151952503919525314Ratregion
66662D5Mco2532653387800433878321Ratregion
66707D5Mco3742352165449021654918Ratregion
67219D5Arb2217852801325928013437Ratregion
67360D5Arb1653548860835488977Ratregion
1630208D5Got20726551381391613814181Ratregion
1630361D5Got21111952686519226865311Ratregion
1630371D5Got27411153343667833436775Ratregion
1630534D5Got26026054938262149382870Ratregion
1630875D5Wox3620953154736731547578Ratregion
1631003D5Got27129155496681654967107Ratregion
1631146D5Got2799453675392036754014Ratregion
1631457D5Got28810453167064431670743Ratregion
1631662D5Got28117353298018732980360Ratregion
1632022D5Got28223355674562456745858Ratregion
1632343D5Got21716253875440738754569Ratregion
1578970D10Chm5117053358383633584012Ratregion
1579025D10Chm5025053366817233668415Ratregion
1581972D5Uwm6355556454955564767Ratregion
1627772D5Got22413355211927452119348Ratregion
1627772D5Got22413355211921552119669Ratregion
1627772D5Got22413355211921552119348Ratregion
1628062D5Got26125051453776414538012Ratregion
1628972D5Got28912953841574038415871Ratregion
1629035D5Got20321451453226914532484Ratregion
1629157D5Got21314552748649727486644Ratregion
1629653D5Wox2619451386131313861507Ratregion
1629836D5Got26511253648516436485271Ratregion
1638637D5Wox3217555623968756239862Ratregion
1638832D5Got31613453491092534911028Ratregion
1638832D5Got31613453491089434911028Ratregion
1641068D5Got20515351454121014541363Ratregion
1641243D5Got32321655650899856509214Ratregion
1641312D5Got32115151654023616540387Ratregion
1641425D5Cebr329855678119356781493Ratregion
1641522D5Got22924855725016657250414Ratregion
1641564D5Ulb215655101538651015542Ratregion
1633225D5Got20612551396962113969746Ratregion
1633468D5Got27611854807905548079173Ratregion
1633482D5Got21515853683371036833869Ratregion
1633616D5Got27518353556330135563484Ratregion
1639986D5Wox3416751938954419389711Ratregion
1640110D5Got30814754879375848793905Ratregion
1640375D5Got21614153409119634091337Ratregion
1640560D5Got31718351674906616749249Ratregion
1640751D5Mco31923552354595223546187Ratregion
1635221D9Got20515954616165546161811Ratregion
1635256D5Got21430053473312534733425Ratregion
1635380D5Got20412151364416513644286Ratregion
1635400D5Got25927555672190156722176Ratregion
1635762D5Got22320755104091051041117Ratregion
1635911D5Got22714955629167656291825Ratregion
1636323D5Got22222854757971947579947Ratregion
1636412D5Got29827553559128735591566Ratregion
1636547D5Got21918253830759438307778Ratregion
1636665D5Got29217155522745855227629Ratregion
1636727D5Got28426554229742142297686Ratregion
1636727D5Got28426554229729842297686Ratregion
1638167D5Got28514652787870427878850Ratregion
1638216D5Got22015354156573941565892Ratregion
1638319D5Got20814451602944716029591Ratregion
1633730D5Got22624155723862757238859Ratregion
1633993D5Got25512654859909648599222Ratregion
1634015D5Got30129954884756448847863Ratregion
1634081D5Got29727454983084749831121Ratregion
1634340D5Wox3125651938813419388390Ratregion
1634531D3Got2729252491974524919836Ratregion
1634714D5Got28314353196981631969954Ratregion
7193057Aqp3055624008556240955Ratregion
7193019Runx1t142252733408227334504Ratregion
7193066D5Mit1823651718969817189929Ratregion
7206292Pou3f273053608272336083453Ratregion
5035767PMC165443P112151938356819383689Ratregion
5035775PMC166293P146654842977048430236Ratregion
5035809PMC196070P122453608358836083812Ratregion
5038620AW55725015154718574447185895Ratregion
5035907PMC30485P143255749842957498861Ratregion
5035961PMC317216P177053608217036082940Ratregion
5038800RH12734018055690434056904520Ratregion
5036173RH12567627453510827135108545Ratregion
5038846RH12736621855694684356947061Ratregion
5038982RH12744521951718380617184025Ratregion
7206540UniSTS:546979105952733419327335253Ratregion
7206622Pou3f253153608319836083729Ratregion
5039222RH12758219251316288213163074Ratregion
5036460Pou3f218853608327636083464Ratregion
5036561AU0484359955523561655235715Ratregion
5036679AU04884729355124402851244321Ratregion
5036829AU04933724552993213229932377Ratregion
5036849AU04940619854806043148060628Ratregion
5037109SHGC-5312018552463091124631096Ratregion
5037141A002D3110355656099056561093Ratregion
5037167RH8046023852733784327338081Ratregion
5037169RH9177214251892833618928478Ratregion
5035566SON9851846946018469551Ratregion
5033857RH14037820953896205638962265Ratregion
5033893RH14051814851463158214631725Ratregion
5033901RH14054820755687850156878719Ratregion
5033903RH14055421151675462516754836Ratregion
5028589AI50464211655302830053028416Ratregion
5031468AU04822314954096515940965308Ratregion
5034009RH14101319852847366028473859Ratregion
5034009RH14101319852847366028473859Ratregion
5034121RH14144319652646405926464255Ratregion
5026242RH13145921755665706856657285Ratregion
5034309Epha721154312546543125676Ratregion
5034444BE11817915354912706349127216Ratregion
5026468RH13232622052544686625447086Ratregion
5026582RH13276522052963087829631098Ratregion
5032016AU04635319855597867855978876Ratregion
5034540BE11928317254720312847203300Ratregion
5026892RH13393121154675890546759116Ratregion
5026892RH13393121154675880946759116Ratregion
5032207AB02122814353154710131547244Ratregion
5032259AI4625588755718533757185424Ratregion
5032357AI46752311154741238047412491Ratregion
5035146BQ20049115953315944233159602Ratregion
5026966RH13421418152260323822603419Ratregion
5027087D8S195729151892831518928606Ratregion
5027225AI1964529351604613116046224Ratregion
5029865AW53093718452948600629486190Ratregion
5032679RH13489515653333540333335559Ratregion
5027263AV00136011952830693728307056Ratregion
5027265D0031412955593505255935181Ratregion
5032795RH13532620554019709940197304Ratregion
5035310BM38627220952950116729501376Ratregion
5027587AW5561297655585638055856456Ratregion
5030215AW53231315953136060031360759Ratregion
5024982RH12683020852173974321739951Ratregion
5024984AW5515838553896384438963929Ratregion
5027725D8S195010652733459727334703Ratregion
5030231BE11111315151719048217190633Ratregion
5033077RH13750512352173943721739560Ratregion
5025146RH12709222251846952118469743Ratregion
5025146RH12709222251846952118469743Ratregion
5025284RH12773020555531560955315814Ratregion
5030451BI28869517652402980824029984Ratregion
5033233RH13807413751655823716558374Ratregion
5030669BE10754216554686020146860366Ratregion
5030845BE12064218753847622538476411Ratregion
5030879BE11445819453155310731553301Ratregion
5033663RH13965020454912085949121947Ratregion
5025846RH12991321353602912136029334Ratregion
5025848RH12992121753528459035284807Ratregion
5028430D2635214152939924629399387Ratregion
5031145BE11632116654938794749388113Ratregion
5052095RH9483714051675436216754500Ratregion
5051140RH13446218053154975531549935Ratregion
5055843RH14403414152173986821740009Ratregion
5055999RH14412411653742990837430024Ratregion
5056045RH14415123552952046329520698Ratregion
5051559AW10588511355538813855388251Ratregion
5051679RH9459519951386057213860771Ratregion
5053933RH14293422353313259833132821Ratregion
5053973RH14295716255593563855935800Ratregion
5056543RH14443910255629407756294179Ratregion
5056867RH14462615352435299224353145Ratregion
5052097RH9483817351675482716755000Ratregion
5059520BE09719815552277206322772218Ratregion
5055643RH14391919455666000656660200Ratregion
5055657RH14392719455725852457258943Ratregion
5055081RH14359518054297633142976511Ratregion
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5087722Cbfa2t1h19652733498927335185Ratregion
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5087506PMC212738P149353547718935477365Ratregion
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5087153BQ20910718351639144716391630Ratregion
5084894AI00926018951957396819574157Ratregion
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5087983UniSTS:143722053045590230456083Ratregion
5085561AI23134315052187389621874046Ratregion
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5081963BE11892616751473999914740166Ratregion
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5507559RH68043103851342313513424173Ratregion
5504340D11S303847852685165926852137Ratregion
5504928Runx1t15252733519227335244Ratregion
5504873ha284791354211235542113268Ratregion
5505052Kat2b6853542712335427190Ratregion
5505251Ccl21a34055698069256981115Ratregion
5505568UniSTS:482606142254842873348430155Ratregion
5505748UniSTS:492577144853608237636083824Ratregion
5505992UniSTS:49675113152429610724296238Ratregion
5506000UniSTS:496823055682913256829498Ratregion
5506007UniSTS:49727763854284112642841764Ratregion
5506463GDB:13175647852592491925924997Ratregion
5506553MMP16_92090953154693031547841Ratregion
5506735G4487015651789659617896752Ratregion
5506883G4720419251926619219266384Ratregion
5507101UniSTS:22453919754310892343109120Ratregion
5507181UniSTS:22501415152733436227334513Ratregion
5499527stSG60954810052858531728585417Ratregion
5500170D4Mit104052159522921595890Ratregion
5499825UniSTS:23487222352830697528307198Ratregion
5499827UniSTS:23489145754912034149120798Ratregion
5499831UniSTS:23489626154938794649388207Ratregion
5500250AW5533769955692976356930133Ratregion
5503017Fut941653936313039363546Ratregion
5500475Aqp3055624008156241431Ratregion
5500683D19S909052476216924763167Ratregion
5501722UniSTS:26699014254312507543125217Ratregion
5501848MARC_15705-15706:1013524302:116452491660224916766Ratregion
5501906MARC_17336-17337:1021394418:110955749883257499457Ratregion
5502241AF0049278955690449356904582Ratregion
5502431RH1248149651846945818469554Ratregion
Position Markers

Peak: (D5Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2535,189,153 - 35,189,418 (+)MAPPER
Rnor_6.0535,788,756 - 35,789,020NCBI
Rnor_5.0540,446,731 - 40,446,995UniSTS
RGSC_v3.4536,386,126 - 36,386,391RGD
RGSC_v3.4536,386,127 - 36,386,391UniSTS
RGSC_v3.1536,386,305 - 36,386,570RGD
Celera534,206,778 - 34,207,042UniSTS
RH 3.4 Map5165.4RGD
RH 3.4 Map5165.4UniSTS
RH 2.0 Map5211.5RGD
SHRSP x BN Map520.3999RGD
Cytogenetic Map5q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: after alcohol administration, animals were placed on their back and the time at when they no longer right themselves was recorded; the lapse time at which they could right themselves was taken as loss of righting reflex (LORR) 1334439
qtl_general number of animals used: 70 days old 413 F2 rats inducing agent: intraperitoneal administration of alcohol 3.5 g/kg 1334439
qtl_general software package used: Map Manager QTX 1334439
qtl_general males scored approximetely twice in the loss of righting reflex test than females, region specific for males 1334439
qtl_statistics Likelihood Ratio: 12.9, for males Likelihood Ratio: 12.4, for females Likelihood Ratio: 6.1 1334439