Epha7 (Eph receptor A7) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Epha7 (Eph receptor A7) Mus musculus
Analyze
Symbol: Epha7
Name: Eph receptor A7
RGD ID: 732960
MGI Page MGI
Description: Enables chemorepellent activity; growth factor binding activity; and transmembrane signaling receptor activity. Involved in several processes, including ephrin receptor signaling pathway; negative regulation of nervous system development; and regulation of protein phosphorylation. Acts upstream of or within nephric duct morphogenesis; nervous system development; and positive regulation of neuron apoptotic process. Is active in glutamatergic synapse. Is expressed in several structures, including alimentary system; brain; foot bone; genitourinary system; and sensory organ. Orthologous to human EPHA7 (EPH receptor A7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cek11; developmental kinase 1; Ebk; EHK-3; Ehk3; embryonic brain kinase; EPH homology kinase 3; ephrin type-A receptor 7; Hek11; mDK-1; Mdk1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39428,811,840 - 28,969,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl428,813,131 - 28,967,499 (+)EnsemblGRCm39 Ensembl
GRCm38428,813,066 - 28,967,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl428,813,131 - 28,967,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv37428,740,295 - 28,894,649 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36428,981,940 - 29,133,870 (+)NCBIMGSCv36mm8
Celera428,584,324 - 28,738,712 (+)NCBICelera
Cytogenetic Map4A4NCBI
cM Map412.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (EXP)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
clozapine  (EXP)
cocaine  (ISO)
dexamethasone  (ISO)
diethyl malate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenvalerate  (ISO)
folic acid  (EXP)
fonofos  (ISO)
genistein  (ISO)
gentamycin  (ISO)
GW 4064  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
ponatinib  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
testosterone  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)
warfarin  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Inhibition of EphA7 up-regulation after spinal cord injury reduces apoptosis and promotes locomotor recovery. Figueroa JD, etal., J Neurosci Res. 2006 Nov 15;84(7):1438-51.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7824284   PMID:8302608   PMID:8541219   PMID:8750872   PMID:8806819   PMID:9010230   PMID:9267020   PMID:9368721   PMID:9883724   PMID:9883737   PMID:10191100   PMID:10349636  
PMID:10395784   PMID:10436162   PMID:10495276   PMID:10559410   PMID:10640695   PMID:10640696   PMID:10774725   PMID:10932185   PMID:11042159   PMID:11076861   PMID:11089974   PMID:11114734  
PMID:11172053   PMID:11217851   PMID:11222144   PMID:11356033   PMID:11403717   PMID:11439183   PMID:11684655   PMID:12124402   PMID:12196586   PMID:12217323   PMID:12421703   PMID:12477932  
PMID:12528186   PMID:12642494   PMID:12684176   PMID:12895420   PMID:14681479   PMID:14691545   PMID:15226265   PMID:15517401   PMID:15713841   PMID:15902206   PMID:15996548   PMID:16141072  
PMID:16141073   PMID:16301174   PMID:16314414   PMID:16446123   PMID:16491080   PMID:16547242   PMID:16602821   PMID:16902088   PMID:17039519   PMID:17145500   PMID:17260020   PMID:17304517  
PMID:17470284   PMID:17698011   PMID:18287559   PMID:18753373   PMID:18957218   PMID:19036963   PMID:19111533   PMID:19247962   PMID:19369400   PMID:19402755   PMID:19521500   PMID:19521566  
PMID:19542359   PMID:19759535   PMID:19769959   PMID:19877281   PMID:20112066   PMID:20589882   PMID:21060110   PMID:21060113   PMID:21156168   PMID:21267068   PMID:21345310   PMID:21465626  
PMID:21677750   PMID:21873635   PMID:21940705   PMID:21947380   PMID:22022520   PMID:22036564   PMID:22065784   PMID:22121026   PMID:22490549   PMID:22568954   PMID:22821544   PMID:22923088  
PMID:23425387   PMID:23623550   PMID:23657875   PMID:23658181   PMID:23831966   PMID:24036135   PMID:24038871   PMID:24574009   PMID:24707048   PMID:24909897   PMID:24952961   PMID:25073978  
PMID:25139858   PMID:25367067   PMID:25480914   PMID:25710467   PMID:25971728   PMID:26178595   PMID:26243870   PMID:26345456   PMID:26441306   PMID:26587807   PMID:26644518   PMID:26830346  
PMID:26941654   PMID:26989192   PMID:27100196   PMID:27307230   PMID:27533460   PMID:28197551   PMID:30084950   PMID:31220272   PMID:31351040   PMID:31597102   PMID:31685980   PMID:32047912  
PMID:32314958   PMID:33523829   PMID:34235739   PMID:34546353   PMID:35112312   PMID:35294885   PMID:35364055   PMID:37700636   PMID:38429579   PMID:38636517  


Genomics

Comparative Map Data
Epha7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39428,811,840 - 28,969,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl428,813,131 - 28,967,499 (+)EnsemblGRCm39 Ensembl
GRCm38428,813,066 - 28,967,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl428,813,131 - 28,967,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv37428,740,295 - 28,894,649 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36428,981,940 - 29,133,870 (+)NCBIMGSCv36mm8
Celera428,584,324 - 28,738,712 (+)NCBICelera
Cytogenetic Map4A4NCBI
cM Map412.42NCBI
EPHA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38693,240,020 - 93,419,559 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl693,240,020 - 93,419,687 (-)EnsemblGRCh38hg38GRCh38
GRCh37693,949,738 - 94,129,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36694,007,860 - 94,185,993 (-)NCBINCBI36Build 36hg18NCBI36
Build 34694,007,859 - 94,185,993NCBI
Celera694,370,456 - 94,550,043 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef691,169,863 - 91,349,539 (-)NCBIHuRef
CHM1_1694,047,125 - 94,226,695 (-)NCBICHM1_1
T2T-CHM13v2.0694,452,021 - 94,631,561 (-)NCBIT2T-CHM13v2.0
Epha7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8547,771,776 - 47,925,189 (+)NCBIGRCr8
mRatBN7.2542,975,353 - 43,128,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl542,975,405 - 43,127,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx545,088,903 - 45,248,749 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0546,688,133 - 46,847,992 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0546,637,329 - 46,797,189 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0543,602,744 - 43,761,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl543,603,043 - 43,757,549 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0548,229,993 - 48,390,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4544,728,037 - 44,878,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1544,728,215 - 44,878,511 (+)NCBI
Celera541,793,958 - 41,943,704 (+)NCBICelera
Cytogenetic Map5q21NCBI
Epha7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541119,650,515 - 19,815,512 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541119,652,146 - 19,815,418 (-)NCBIChiLan1.0ChiLan1.0
EPHA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25113,349,035 - 113,527,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16111,243,468 - 111,422,053 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0691,143,240 - 91,322,040 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1694,392,353 - 94,563,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl694,392,353 - 94,566,716 (-)Ensemblpanpan1.1panPan2
EPHA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11252,134,775 - 52,305,163 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1252,137,605 - 52,305,162 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1251,943,814 - 52,113,431 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01252,942,277 - 53,113,070 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1252,945,000 - 53,113,162 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11252,278,827 - 52,448,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01252,154,143 - 52,325,433 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01252,347,435 - 52,517,393 (-)NCBIUU_Cfam_GSD_1.0
Epha7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494686,997,992 - 87,164,862 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936812698,533 - 865,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936812698,548 - 865,589 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl160,771,572 - 60,944,038 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1160,771,567 - 60,944,092 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2168,252,819 - 68,430,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11318,097,051 - 18,283,664 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1318,099,005 - 18,281,415 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040194,422,647 - 194,601,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624799560,432 - 754,132 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624799560,441 - 753,509 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epha7
5453 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2923
Count of miRNA genes:712
Interacting mature miRNAs:935
Transcripts:ENSMUST00000029964, ENSMUST00000080934, ENSMUST00000108191, ENSMUST00000108194, ENSMUST00000129029, ENSMUST00000129912, ENSMUST00000136827, ENSMUST00000149030
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse

Markers in Region
Epha7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,948,636 - 28,948,741UniSTSGRCm38
MGSCv37428,891,561 - 28,891,769UniSTSGRCm37
MGSCv37428,891,176 - 28,891,316UniSTSGRCm37
Celera428,719,844 - 28,719,949UniSTS
Cytogenetic Map4A4UniSTS
cM Map41.9UniSTS
cM Map41.9UniSTS
UniSTS:224532  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,964,915 - 28,965,073UniSTSGRCm38
MGSCv37428,892,065 - 28,892,223UniSTSGRCm37
Celera428,736,128 - 28,736,286UniSTS
Cytogenetic Map4A4UniSTS
cM Map41.9UniSTS
UniSTS:224539  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,946,658 - 28,946,854UniSTSGRCm38
MGSCv37428,873,808 - 28,874,004UniSTSGRCm37
Celera428,717,866 - 28,718,062UniSTS
Cytogenetic Map4A4UniSTS
cM Map41.9UniSTS
UniSTS:224549  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,966,660 - 28,966,815UniSTSGRCm38
MGSCv37428,893,810 - 28,893,965UniSTSGRCm37
Celera428,737,873 - 28,738,028UniSTS
Cytogenetic Map4A4UniSTS
cM Map41.9UniSTS
Epha7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,964,411 - 28,964,619UniSTSGRCm38
MGSCv37428,891,561 - 28,891,769UniSTSGRCm37
Celera428,735,624 - 28,735,832UniSTS
Cytogenetic Map4A4UniSTS
cM Map41.9UniSTS
Epha7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A4UniSTS
Epha7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A4UniSTS
Epha7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38428,964,026 - 28,964,166UniSTSGRCm38
MGSCv37428,891,176 - 28,891,316UniSTSGRCm37
Celera428,735,239 - 28,735,379UniSTS
Cytogenetic Map4A4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK030480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX000989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF729611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN702163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X79082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X79083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X79084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029964   ⟹   ENSMUSP00000029964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,813,131 - 28,967,499 (+)Ensembl
GRCm38.p6 Ensembl428,813,131 - 28,967,499 (+)Ensembl
Ensembl Acc Id: ENSMUST00000080934   ⟹   ENSMUSP00000079735
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,813,131 - 28,947,047 (+)Ensembl
GRCm38.p6 Ensembl428,813,131 - 28,947,047 (+)Ensembl
Ensembl Acc Id: ENSMUST00000108191   ⟹   ENSMUSP00000103826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,813,250 - 28,967,499 (+)Ensembl
GRCm38.p6 Ensembl428,813,250 - 28,967,499 (+)Ensembl
Ensembl Acc Id: ENSMUST00000108194   ⟹   ENSMUSP00000103829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,813,152 - 28,966,815 (+)Ensembl
GRCm38.p6 Ensembl428,813,152 - 28,966,815 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,871,841 - 28,943,500 (+)Ensembl
GRCm38.p6 Ensembl428,871,841 - 28,943,500 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,871,924 - 28,946,334 (+)Ensembl
GRCm38.p6 Ensembl428,871,924 - 28,946,334 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,815,429 - 28,821,199 (+)Ensembl
GRCm38.p6 Ensembl428,815,429 - 28,821,199 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl428,813,326 - 28,873,801 (+)Ensembl
GRCm38.p6 Ensembl428,813,326 - 28,873,801 (+)Ensembl
RefSeq Acc Id: NM_001122889   ⟹   NP_001116361
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,947,047 (+)NCBI
GRCm38428,813,145 - 28,947,453 (+)NCBI
MGSCv37428,740,295 - 28,894,649 (+)RGD
Celera428,584,310 - 28,738,716 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290434   ⟹   NP_001277363
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,967,511 (+)NCBI
GRCm38428,813,131 - 28,967,503 (+)NCBI
Celera428,584,310 - 28,738,716 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001420912   ⟹   NP_001407841
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,947,047 (+)NCBI
RefSeq Acc Id: NM_001420913   ⟹   NP_001407842
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,967,511 (+)NCBI
RefSeq Acc Id: NM_001420914   ⟹   NP_001407843
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,967,511 (+)NCBI
RefSeq Acc Id: NM_010141   ⟹   NP_034271
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,163 - 28,967,511 (+)NCBI
GRCm38428,813,131 - 28,967,503 (+)NCBI
MGSCv37428,740,295 - 28,894,649 (+)RGD
Celera428,584,310 - 28,738,716 (+)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537607   ⟹   XP_006537670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,811,840 - 28,966,727 (+)NCBI
GRCm38428,813,066 - 28,966,727 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163649   ⟹   XP_036019542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,633 - 28,969,391 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163650   ⟹   XP_036019543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,633 - 28,964,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163651   ⟹   XP_036019544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,632 - 28,964,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163652   ⟹   XP_036019545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,632 - 28,964,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163654   ⟹   XP_036019547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,729 - 28,964,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163655   ⟹   XP_036019548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,815,727 - 28,964,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163656   ⟹   XP_036019549
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,633 - 28,947,049 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941806
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,813,634 - 28,967,511 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941807
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,811,840 - 28,967,511 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941808
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39428,815,397 - 28,967,506 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116361 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277363 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407841 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407842 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407843 (Get FASTA)   NCBI Sequence Viewer  
  NP_034271 (Get FASTA)   NCBI Sequence Viewer  
  XP_006537670 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019542 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019543 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019544 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019545 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019547 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019548 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019549 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH26153 (Get FASTA)   NCBI Sequence Viewer  
  BAC26982 (Get FASTA)   NCBI Sequence Viewer  
  BAC28203 (Get FASTA)   NCBI Sequence Viewer  
  BAC28509 (Get FASTA)   NCBI Sequence Viewer  
  BAE43283 (Get FASTA)   NCBI Sequence Viewer  
  CAA55687 (Get FASTA)   NCBI Sequence Viewer  
  CAA55688 (Get FASTA)   NCBI Sequence Viewer  
  CAA55689 (Get FASTA)   NCBI Sequence Viewer  
  CAA57224 (Get FASTA)   NCBI Sequence Viewer  
  EDL05515 (Get FASTA)   NCBI Sequence Viewer  
  EDL05516 (Get FASTA)   NCBI Sequence Viewer  
  EDL05517 (Get FASTA)   NCBI Sequence Viewer  
  EDL05518 (Get FASTA)   NCBI Sequence Viewer  
  EDL05519 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000029964
  ENSMUSP00000029964.6
  ENSMUSP00000079735
  ENSMUSP00000079735.5
  ENSMUSP00000103826
  ENSMUSP00000103826.2
  ENSMUSP00000103829
  ENSMUSP00000103829.3
GenBank Protein Q61772 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034271   ⟸   NM_010141
- Peptide Label: isoform 1 precursor
- UniProtKB: Q61774 (UniProtKB/Swiss-Prot),   Q61773 (UniProtKB/Swiss-Prot),   Q61505 (UniProtKB/Swiss-Prot),   Q8BSU8 (UniProtKB/Swiss-Prot),   Q61772 (UniProtKB/Swiss-Prot),   Q8R381 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116361   ⟸   NM_001122889
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8CC52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537670   ⟸   XM_006537607
- Peptide Label: isoform X9
- UniProtKB: Q61772 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277363   ⟸   NM_001290434
- Peptide Label: isoform 3 precursor
- UniProtKB: A2BDQ4 (UniProtKB/TrEMBL),   Q8R381 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000029964   ⟸   ENSMUST00000029964
Ensembl Acc Id: ENSMUSP00000103826   ⟸   ENSMUST00000108191
Ensembl Acc Id: ENSMUSP00000103829   ⟸   ENSMUST00000108194
Ensembl Acc Id: ENSMUSP00000079735   ⟸   ENSMUST00000080934
RefSeq Acc Id: XP_036019544   ⟸   XM_036163651
- Peptide Label: isoform X3
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019545   ⟸   XM_036163652
- Peptide Label: isoform X4
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019542   ⟸   XM_036163649
- Peptide Label: isoform X1
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019543   ⟸   XM_036163650
- Peptide Label: isoform X2
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019549   ⟸   XM_036163656
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036019547   ⟸   XM_036163654
- Peptide Label: isoform X1
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019548   ⟸   XM_036163655
- Peptide Label: isoform X1
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407842   ⟸   NM_001420913
- Peptide Label: isoform 5 precursor
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407843   ⟸   NM_001420914
- Peptide Label: isoform 6 precursor
- UniProtKB: Q8R381 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407841   ⟸   NM_001420912
- Peptide Label: isoform 4 precursor
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61772-F1-model_v2 AlphaFold Q61772 1-998 view protein structure

Promoters
RGD ID:6835272
Promoter ID:MM_KWN:36922
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000108191,   OTTMUST00000010868,   OTTMUST00000010880,   OTTMUST00000010881,   UC008SEL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36428,739,959 - 28,740,459 (+)MPROMDB
RGD ID:6835302
Promoter ID:MM_KWN:36923
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000010884,   OTTMUST00000010887
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36428,741,986 - 28,742,486 (+)MPROMDB
RGD ID:6882954
Promoter ID:EPDNEW_M4928
Type:multiple initiation site
Name:Epha7_1
Description:Mus musculus Eph receptor A7 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38428,813,165 - 28,813,225EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95276 AgrOrtholog
Ensembl Genes ENSMUSG00000028289 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029964 ENTREZGENE
  ENSMUST00000029964.12 UniProtKB/Swiss-Prot
  ENSMUST00000080934 ENTREZGENE
  ENSMUST00000080934.11 UniProtKB/Swiss-Prot
  ENSMUST00000108191 ENTREZGENE
  ENSMUST00000108191.2 UniProtKB/TrEMBL
  ENSMUST00000108194 ENTREZGENE
  ENSMUST00000108194.9 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EphA7_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rcpt_TKs UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13841 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95276 ENTREZGENE
NCBI Gene 13841 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPHRIN TYPE-A RECEPTOR 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epha7 PhenoGen
PIRSF TyrPK_ephrin_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/Swiss-Prot
  EPH_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57184 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2BDQ4 ENTREZGENE, UniProtKB/TrEMBL
  EPHA7_MOUSE UniProtKB/Swiss-Prot
  Q3V3T7_MOUSE UniProtKB/TrEMBL
  Q61505 ENTREZGENE
  Q61772 ENTREZGENE
  Q61773 ENTREZGENE
  Q61774 ENTREZGENE
  Q8BSU8 ENTREZGENE
  Q8CC52 ENTREZGENE, UniProtKB/TrEMBL
  Q8CCF9_MOUSE UniProtKB/TrEMBL
  Q8R381 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q61505 UniProtKB/Swiss-Prot
  Q61773 UniProtKB/Swiss-Prot
  Q61774 UniProtKB/Swiss-Prot
  Q8BSU8 UniProtKB/Swiss-Prot