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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - ClinVar | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| High Myopia | ISO | RGD:731607 | 8554872 | ClinVar Annotator: match by term: Severe Myopia | ClinVar | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| pleomorphic xanthoastrocytoma | ISO | RGD:731607 | 8554872 | ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma | ClinVar | PMID:28299358 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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References - curated| 1. | Carmichael ST, etal., Exp Neurol. 2005 Jun;193(2):291-311. |
| 2. | Davies JE, etal., Eur J Neurosci. 2004 Mar;19(5):1226-42. |
| 3. | Deepa SS, etal., J Biol Chem. 2006 Jun 30;281(26):17789-800. Epub 2006 Apr 27. |
| 4. | Engel M, etal., J Comp Neurol 1996 Feb 26;366(1):34-43. |
| 5. | Forostyak S, etal., Stem Cells. 2014 Aug 11. doi: 10.1002/stem.1812. |
| 6. | Fujikawa A, etal., J Biochem. 2007 Sep;142(3):343-50. Epub 2007 Jul 23. |
| 7. | Fujikawa A, etal., J Biol Chem. 2011 Oct 28;286(43):37137-46. doi: 10.1074/jbc.M111.270140. Epub 2011 Sep 2. |
| 8. | Fukada M, etal., FEBS Lett. 2006 Jul 24;580(17):4051-6. Epub 2006 Jun 27. |
| 9. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 10. | GOA data from the GO Consortium |
| 11. | Grumet M, etal., J Biol Chem 1994 Apr 22;269(16):12142-6. |
| 12. | Hayashi N, etal., Brain Res. 2005 Jul 19;1050(1-2):163-9. |
| 13. | Hayashi N, etal., Mol Cell Neurosci. 2005 Nov;30(3):364-77. Epub 2005 Sep 16. |
| 14. | Hayashi N, etal., Neuroscience. 2005;131(2):331-48. |
| 15. | Inatani M, etal., Invest Ophthalmol Vis Sci. 2001 Jul;42(8):1930-8. |
| 16. | Jones LL, etal., Exp Neurol. 2003 Aug;182(2):399-411. |
| 17. | Katoh-Semba R, etal., Neurosci Res. 1998 Aug;31(4):273-82. |
| 18. | Kawachi H, etal., Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6593-8. Epub 2001 May 29. |
| 19. | Kurazono S, etal., Brain Res. 2001 Apr 13;898(1):36-48. |
| 20. | Kurazono S, etal., Neurosci Lett. 2001 May 25;304(3):169-72. |
| 21. | Li J, etal., Brain Res Mol Brain Res. 1998 Sep 18;60(1):77-88. |
| 22. | Maeda N and Noda M, Development. 1996 Feb;122(2):647-58. |
| 23. | Maeda N and Noda M, J Cell Biol. 1998 Jul 13;142(1):203-16. |
| 24. | Maeda N, etal., J Biol Chem. 1996 Aug 30;271(35):21446-52. |
| 25. | Maeda N, etal., J Biol Chem. 1999 Apr 30;274(18):12474-9. |
| 26. | Matsui F, etal., J Neurosci Res. 2005 Sep 15;81(6):837-45. |
| 27. | Matsui F, etal., Neuroscience 2002;112(4):773-81. |
| 28. | Maurel P, etal., Proc Natl Acad Sci U S A 1994 Mar 29;91(7):2512-6. |
| 29. | Meyer-Puttlitz B, etal., J Comp Neurol 1996 Feb 26;366(1):44-54. |
| 30. | MGD data from the GO Consortium |
| 31. | Milev P, etal., J Biol Chem 1995 Oct 20;270(42):24650-3. |
| 32. | Milev P, etal., J Biol Chem. 1998 Aug 21;273(34):21439-42. |
| 33. | Milev P, etal., J Cell Biol 1994 Dec;127(6 Pt 1):1703-15. |
| 34. | Muramatsu H, etal., J Cell Sci. 2004 Oct 15;117(Pt 22):5405-15. doi: 10.1242/jcs.01423. Epub 2004 Oct 5. |
| 35. | Naffah-Mazzacoratti MG, etal., Brain Res Bull. 1999 Nov 1;50(4):229-39. |
| 36. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 37. | Nishiwaki T, etal., J Biochem. 1998 Mar;123(3):458-67. |
| 38. | Okamoto M, etal., Cell Tissue Res. 2001 Nov;306(2):217-29. |
| 39. | Okamoto M, etal., Exp Neurol. 2003 Nov;184(1):179-95. |
| 40. | OMIM Disease Annotation Pipeline |
| 41. | Qi M, etal., J Biol Chem. 2001 May 11;276(19):15868-75. |
| 42. | Ranjan M and Hudson LD, Mol Cell Neurosci. 1996 May;7(5):404-18. |
| 43. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 44. | RGD automated import pipeline for gene-chemical interactions |
| 45. | Robles Y, etal., Neurobiol Learn Mem. 2003 Jul;80(1):80-95. |
| 46. | Sango K, etal., Exp Neurol. 2003 Jul;182(1):1-11. |
| 47. | Tanaka M, etal., J Neurosci. 2003 Apr 1;23(7):2804-14. |
| 48. | Tanga N, etal., Glia. 2019 May;67(5):967-984. doi: 10.1002/glia.23583. Epub 2019 Jan 22. |
| 49. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
| 50. | Thomaidou D, etal., J Neurochem. 2001 Aug;78(4):767-78. |
| 51. | Vitellaro-Zuccarello L, etal., Neuroscience. 2008 Jan 24;151(2):452-66. Epub 2007 Nov 7. |
| 52. | Wilson MT and Snow DM, J Comp Neurol. 2000 Aug 28;424(3):532-46. |
References - uncurated| PubMed | 7579589 7628014 8889548 9118959 9182584 10234020 10706604 10769382 10793198 12573468 12700241 12840014 16452087 16513268 17368428 18055543 18713734 19141078 19141530 19751804 21969550 24029230 25519047 26615567 26857455 27374750 27445335 28717188 |
Comparative Map Data| Ptprz1 (Rattus norvegicus - Norway rat) |
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| PTPRZ1 (Homo sapiens - human) |
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| Ptprz1 (Mus musculus - house mouse) |
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| Ptprz1 (Chinchilla lanigera - long-tailed chinchilla) |
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| PTPRZ1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| PTPRZ1 (Canis lupus familiaris - dog) |
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| Ptprz1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PTPRZ1 (Sus scrofa - pig) |
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| PTPRZ1 (Chlorocebus sabaeus - African green monkey) |
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| Ptprz1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| RH144069 |
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| BF386063 |
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| RH137971 |
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| AW521233 |
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| UniSTS:498441 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 74 | ||||||||||||
| Low | 2 | 6 | 32 | 16 | 8 | 16 | 3 | 3 | 23 | 33 | 11 | 3 | |
| Below cutoff | 1 | 37 | 20 | 20 | 11 | 20 | 5 | 7 | 12 | 6 | 5 |
Nucleotide Sequences| RefSeq Transcripts | NM_001170685 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_013080 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236137 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236138 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236139 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07060019 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07060020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07060021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07060022 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029031 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029032 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029033 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029034 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029035 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029036 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029037 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029038 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029039 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01029040 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BE104455 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ213280 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U04998 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| U09357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000008719 ⟹ ENSRNOP00000008719 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001170685 ⟹ NP_001164156 | ||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
CCTAGACCCTGGCCAGTCACCGGCGTCCCCTGTCTCGGTGTTCCCACTCTCTGCACCCTAAGCThide sequence |
| RefSeq Acc Id: | NM_013080 ⟹ NP_037212 | ||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CCTAGACCCTGGCCAGTCACCGGCGTCCCCTGTCTCGGTGTTCCCACTCTCTGCACCCTAAGCThide sequence |
| RefSeq Acc Id: | XM_006236137 ⟹ XP_006236199 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CGCGCTGCGCGTGCCCAGCCCGGAGCGCGTCCCCGCAATCCCGCGCCGCTGTGCTGCCAGCGCThide sequence |
| RefSeq Acc Id: | XM_006236138 ⟹ XP_006236200 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GCTGCGCGTGCCCAGCCCGGAGCGCGTCCCCGCAATCCCGCGCCGCTGTGCTGCCAGCGCTCAGhide sequence |
| RefSeq Acc Id: | XM_006236139 ⟹ XP_006236201 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GCTGCGCGTGCCCAGCCCGGAGCGCGTCCCCGCAATCCCGCGCCGCTGTGCTGCCAGCGCTCAGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001164156 | (Get FASTA) | NCBI Sequence Viewer |
| NP_037212 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236199 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236200 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236201 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAC52207 | (Get FASTA) | NCBI Sequence Viewer |
| AAC52383 | (Get FASTA) | NCBI Sequence Viewer | |
| Q62656 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_037212 ⟸ NM_013080 |
| - Peptide Label: | isoform 1 precursor |
| - UniProtKB: | Q62656 (UniProtKB/Swiss-Prot), F1LMY3 (UniProtKB/TrEMBL) |
| - Sequence: |
MRILQSFLACVQLLCVCRLDWAYGYYRQQRKLVEEIGWSYTGALNQKNWGKKYPICNSPKQSPIhide sequence |
| RefSeq Acc Id: | NP_001164156 ⟸ NM_001170685 |
| - Peptide Label: | isoform 2 precursor |
| - UniProtKB: | Q62656 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MRILQSFLACVQLLCVCRLDWAYGYYRQQRKLVEEIGWSYTGALNQKNWGKKYPICNSPKQSPIhide sequence |
| RefSeq Acc Id: | XP_006236200 ⟸ XM_006236138 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MRILQSFLACVQLLCVCRLDWAYGYYRQQRKLVEEIGWSYTGALNQKNWGKKYPICNSPKQSPIhide sequence |
| RefSeq Acc Id: | XP_006236201 ⟸ XM_006236139 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MRILQSFLACVQLLCVCRLDWAYGYYRQQRKLVEEIGWSYTGALNQKNWGKKYPICNSPKQSPIhide sequence |
| RefSeq Acc Id: | XP_006236199 ⟸ XM_006236137 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MRILQSFLACVQLLCVCRLDWAYGYYRQQRKLVEEIGWSYTGALNQKNWGKKYPICNSPKQSPIhide sequence |
| RefSeq Acc Id: | ENSRNOP00000008719 ⟸ ENSRNOT00000008719 |
TranscriptomeStrain Sequence Variants (Rnor 6.0)
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Damaging Variants| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 4 | 49861114 | 49861115 | A | T | snv | SDLEF7/Barth (UDEL), MNS/Gib (KNAW), LE/Stm (SOLiD) (KNAW), SBN/Ygl (KNAW), LE/Stm (KyushuU), LE/Stm (Illumina) (KNAW), HTX/Kyo (KyushuU), MHS/Gib (KNAW), SBN/Ygl (MCW) |
| 4 | 49873073 | 49873074 | C | T | snv | ACI/EurMcwi (MCW), WKY/NHsd (KNAW), FHL/EurMcwi (KNAW), F344/DuCrlCrlj (KyushuU), FHH/EurMcwi (MCW), MR/N (KNAW), DA/BklArbNsi (KNAW), WN/N (KNAW), LE/OrlBarth (UDEL), F344/Stm (KyushuU), KFRS3B/Kyo (KyushuU), SBH/Ygl (MCW), ACI/EurMcwi (KNAW), WKY/N (KNAW), F344/NRrrc (SOLiD) (KNAW), LEW/Crl (KNAW), Crl:SD (UDEL), NIG-III/Hok (KyushuU), F344/NSlc (KyushuU), SS/Jr (KNAW), SBH/Ygl (KNAW), F344/NRrrc (Illumina) (KNAW), BUF/MNa (KyushuU), COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), WAG/Rij (KNAW), WKY/NCrl (KNAW), FHH/EurMcwi (KNAW), SDLEF7/Barth (UDEL), RCS/Kyo (KyushuU), LEW/NCrl (KNAW), F344/NHsd (KNAW), F344/NCrl (KNAW), ZF (KyushuU), F344/Jcl (KyushuU), BBDP/WorN (KNAW), ACI/N (KNAW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (KNAW) |
| 4 | 49874382 | 49874383 | T | C | snv | ACI/EurMcwi (MCW), SBH/Ygl (MCW), LE/Stm (Illumina) (KNAW), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), FHL/EurMcwi (MCW), ACI/N (KNAW), SDLEF7/Barth (UDEL), KFRS3B/Kyo (KyushuU), SBH/Ygl (KNAW), F344/NCrl (KNAW), NIG-III/Hok (KyushuU), F344/Stm (KyushuU), WKY/NHsd (KNAW), FHH/EurMcwi (KNAW), LE/Stm (SOLiD) (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), RCS/Kyo (KyushuU), ZF (KyushuU), FHH/EurMcwi (MCW), MHS/Gib (KNAW), SS/JrHsdMcwi (KNAW), BBDP/WorN (KNAW), FHL/EurMcwi (KNAW), LE/OrlBarth (UDEL), HTX/Kyo (KyushuU), COP/CrCrl (MCW & UW), MR/N (KNAW), ACI/EurMcwi (KNAW), F344/NRrrc (SOLiD) (KNAW), Crl:SD (UDEL), F344/Jcl (KyushuU), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), WAG/Rij (KNAW), SBN/Ygl (KNAW), DA/BklArbNsi (KNAW), LEW/Crl (KNAW), WN/N (KNAW), LE/Stm (KyushuU), SS/Jr (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), F344/NHsd (KNAW), F344/NSlc (KyushuU) |
| 4 | 49874858 | 49874859 | G | A | snv | FHH/EurMcwi (MCW), SS/JrHsdMcwi (MCW), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), DA/BklArbNsi (KNAW), MHS/Gib (KNAW), KFRS3B/Kyo (KyushuU), F344/Stm (KyushuU), LE/Stm (KyushuU), MNS/Gib (KNAW), ACI/N (KNAW), LEW/Crl (KNAW), FHH/EurMcwi (KNAW), F344/NHsd (KNAW), F344/NRrrc (Illumina) (KNAW), LEW/NCrl (KNAW), LE/OrlBarth (UDEL), COP/CrCrl (MCW & UW), SS/JrHsdMcwi (KNAW), WKY/N (KNAW), LE/Stm (Illumina) (KNAW), SBH/Ygl (MCW), FHL/EurMcwi (MCW), SBN/Ygl (KNAW), WKY/NHsd (KNAW), LE/Stm (SOLiD) (KNAW), WN/N (KNAW), BUF/MNa (KyushuU), F344/Jcl (KyushuU), MR/N (KNAW), SS/Jr (KNAW), F344/NCrl (KNAW), FHL/EurMcwi (KNAW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), ACI/EurMcwi (MCW), ZF (KyushuU), WAG/Rij (KNAW), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), RCS/Kyo (KyushuU), SBN/Ygl (MCW), ACI/EurMcwi (KNAW), BBDP/WorN (KNAW), SBH/Ygl (KNAW), WKY/NCrl (KNAW), F344/NRrrc (SOLiD) (KNAW) |
| 4 | 49875113 | 49875114 | A | G | snv | MHS/Gib (KNAW), LE/Stm (KyushuU), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), LE/Stm (SOLiD) (KNAW), SBN/Ygl (KNAW), LE/Stm (Illumina) (KNAW), MNS/Gib (KNAW) |
| 4 | 49889742 | 49889743 | T | C | snv | SDLEF7/Barth (UDEL), MHS/Gib (KNAW), SBN/Ygl (KNAW), SBN/Ygl (MCW), MNS/Gib (KNAW) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 4 | 50074483 | 50074484 | A | T | snv | MNS/Gib (RGD), SBN/Ygl (MCW), SBN/Ygl (RGD), MHS/Gib (RGD), LE/Stm (RGD) |
| 4 | 50086442 | 50086443 | C | T | snv | ACI/EurMcwi (MCW), WN/N (MCW), F344/NCrl (RGD), LEW/Crl (RGD), SBH/Ygl (MCW), WKY/N (MCW), SS/JrHsdMcwi (RGD), COP/CrCrl (MCW & UW), LEW/NCrlBR (RGD), SBH/Ygl (RGD), WAG/Rij (RGD), ACI/N (MCW), WKY/NCrl (RGD), FHH/EurMcwi (MCW), F344/NRrrc (MCW), MR/N (MCW), FHL/EurMcwi (MCW), FHL/EurMcwi (RGD), BBDP/Wor (RGD), WKY/NHsd (RGD), SS/JrHsdMcwi (MCW), CDS, FHH/EurMcwi (RGD), SS/Jr (RGD) |
| 4 | 50087751 | 50087752 | T | C | snv | BBDP/Wor (RGD), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), WKY/NCrl (RGD), MNS/Gib (RGD), ACI/N (MCW), F344/NCrl (RGD), F344/NRrrc (MCW), CDS, SS/Jr (RGD), FHH/EurMcwi (RGD), FHH/EurMcwi (MCW), ACI/EurMcwi (RGD), WKY/NHsd (RGD), WAG/Rij (RGD), ACI/EurMcwi (MCW), MHS/Gib (RGD), LEW/Crl (RGD), SS/JrHsdMcwi (RGD), SS/JrHsdMcwi (MCW), LEW/NCrlBR (RGD), LE/Stm (RGD), SBN/Ygl (RGD), WN/N (MCW), MR/N (MCW), SBN/Ygl (MCW), SBH/Ygl (RGD), SBH/Ygl (MCW), FHL/EurMcwi (RGD), WKY/N (MCW) |
| 4 | 50088227 | 50088228 | G | A | snv | SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), WN/N (MCW), WKY/N (MCW), ACI/N (MCW), CDS, ACI/EurMcwi (MCW), SS/JrHsdMcwi (RGD), LEW/Crl (RGD), LE/Stm (RGD), F344/NCrl (RGD), ACI/EurMcwi (RGD), SBN/Ygl (RGD), MNS/Gib (RGD), LEW/NCrlBR (RGD), COP/CrCrl (MCW & UW), SBH/Ygl (RGD), MHS/Gib (RGD), SS/Jr (RGD), FHH/EurMcwi (RGD), BBDP/Wor (RGD), WAG/Rij (RGD), F344/NRrrc (MCW), SBN/Ygl (MCW), FHL/EurMcwi (RGD), MR/N (MCW), FHH/EurMcwi (MCW), WKY/NCrl (RGD) |
| 4 | 50088482 | 50088483 | A | G | snv | SBN/Ygl (RGD), LE/Stm (RGD), MNS/Gib (RGD), SBN/Ygl (MCW), MHS/Gib (RGD) |
| 4 | 50103111 | 50103112 | T | C | snv | MHS/Gib (RGD), MNS/Gib (RGD), SBN/Ygl (MCW), SBN/Ygl (RGD) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 4 | 49402608 | 49402609 | A | T | snv | LE/Stm (ICL), MHS/Gib (ICL), LE/Stm (KNAW), MNS/Gib (ICL), SBN/Ygl (ICL) |
| 4 | 49414568 | 49414569 | C | T | snv | ACI/N (KNAW), FHH/EurMcwi (MCW), LCR/2Mco (UMich), DA/BklArbNsi (ICAHN), WKY/N (KNAW), ACI/EurMcwi (ICL), F344/NCrl (ICL), SBH/Ygl (ICL), MR/N (KNAW), FHL/EurMcwi (MCW), BBDP/WorN (ICL), LEW/NCrl (ICL), SS/JrHsdMcwi (ICL), LCR/1Mco (UMich), WAG/Rij (ICL), HCR/1Mco (UMich), F344/NRrrc (KNAW), WN/N (KNAW), ACI/EurMcwi (MCW), LEW/Crl (ICL), WKY/NCrl (ICL), F344/NHsd (ICAHN), SS/JrHsdMcwi (MDC), SS/JrHsdMcwi (MCW), FHL/EurMcwi (ICL), COP/CrCrl (MCW & UW), HCR/2Mco (UMich), WKY/NHsd (ICL), SS/Jr (ICL), FHH/EurMcwi (MDC), FHH/EurMcwi (ICL) |
| 4 | 49415877 | 49415878 | T | C | snv | F344/NRrrc (KNAW), BBDP/WorN (ICL), LCR/2Mco (UMich), FHH/EurMcwi (MCW), WKY/NHsd (ICL), ACI/EurMcwi (MCW), LEW/NCrl (ICL), SBN/Ygl (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WAG/Rij (ICL), DA/BklArbNsi (ICAHN), SS/JrHsdMcwi (MDC), FHL/EurMcwi (MCW), LEW/Crl (ICL), MNS/Gib (ICL), LE/Stm (KNAW), LE/Stm (ICL), MHS/Gib (ICL), WKY/NCrl (ICL), WN/N (KNAW), COP/CrCrl (MCW & UW), F344/NCrl (ICL), SBH/Ygl (ICL), F344/NHsd (ICAHN), MR/N (KNAW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (ICL), FHL/EurMcwi (ICL), HCR/2Mco (UMich), FHH/EurMcwi (MDC), ACI/N (KNAW), WKY/N (KNAW), ACI/EurMcwi (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich) |
| 4 | 49416353 | 49416354 | G | A | snv | SS/JrHsdMcwi (MDC), LCR/2Mco (UMich), MHS/Gib (ICL), SS/JrHsdMcwi (MCW), WKY/NHsd (ICL), SS/JrHsdMcwi (ICL), MNS/Gib (ICL), LEW/Crl (ICL), F344/NCrl (ICL), BBDP/WorN (ICL), F344/NHsd (ICAHN), LCR/1Mco (UMich), MR/N (KNAW), SBH/Ygl (ICL), SBN/Ygl (ICL), HCR/2Mco (UMich), ACI/N (KNAW), WAG/Rij (ICL), WKY/NCrl (ICL), HCR/1Mco (UMich), FHH/EurMcwi (MDC), COP/CrCrl (MCW & UW), FHL/EurMcwi (ICL), F344/NRrrc (KNAW), ACI/EurMcwi (MCW), LE/Stm (ICL), FHH/EurMcwi (ICL), LEW/NCrl (ICL), LE/Stm (KNAW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), DA/BklArbNsi (ICAHN), WKY/N (KNAW), WN/N (KNAW), ACI/EurMcwi (ICL), SS/Jr (ICL) |
| 4 | 49416608 | 49416609 | A | G | snv | LE/Stm (ICL), MHS/Gib (ICL), LE/Stm (KNAW), MNS/Gib (ICL), SBN/Ygl (ICL) |
| 4 | 49431238 | 49431239 | T | C | snv | SBN/Ygl (ICL), MNS/Gib (ICL), MHS/Gib (ICL) |
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:3455 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000006030 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000008719 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000008719 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/Swiss-Prot |
| 3.10.200.10 | UniProtKB/Swiss-Prot | |
| 3.90.190.10 | UniProtKB/Swiss-Prot | |
| InterPro | alpha_CARP_receptor-type | UniProtKB/Swiss-Prot |
| CA_dom | UniProtKB/Swiss-Prot | |
| CA_dom_sf | UniProtKB/Swiss-Prot | |
| FN3_dom | UniProtKB/Swiss-Prot | |
| FN3_sf | UniProtKB/Swiss-Prot | |
| Ig-like_fold | UniProtKB/Swiss-Prot | |
| Prot-tyrosine_phosphatase-like | UniProtKB/Swiss-Prot | |
| PTPase_domain | UniProtKB/Swiss-Prot | |
| Tyr_Pase_AS | UniProtKB/Swiss-Prot | |
| Tyr_Pase_cat | UniProtKB/Swiss-Prot | |
| TYR_PHOSPHATASE_dom | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:25613 | UniProtKB/Swiss-Prot |
| NCBI Gene | 25613 | ENTREZGENE |
| Pfam | Carb_anhydrase | UniProtKB/Swiss-Prot |
| fn3 | UniProtKB/Swiss-Prot | |
| Y_phosphatase | UniProtKB/Swiss-Prot | |
| PhenoGen | Ptprz1 | PhenoGen |
| PRINTS | PRTYPHPHTASE | UniProtKB/Swiss-Prot |
| PROSITE | ALPHA_CA_2 | UniProtKB/Swiss-Prot |
| FN3 | UniProtKB/Swiss-Prot | |
| TYR_PHOSPHATASE_1 | UniProtKB/Swiss-Prot | |
| TYR_PHOSPHATASE_2 | UniProtKB/Swiss-Prot | |
| TYR_PHOSPHATASE_PTP | UniProtKB/Swiss-Prot | |
| SMART | Carb_anhydrase | UniProtKB/Swiss-Prot |
| FN3 | UniProtKB/Swiss-Prot | |
| PTPc | UniProtKB/Swiss-Prot | |
| PTPc_motif | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | SSF49265 | UniProtKB/Swiss-Prot |
| SSF51069 | UniProtKB/Swiss-Prot | |
| SSF52799 | UniProtKB/Swiss-Prot | |
| TIGR | TC218471 | |
| UniGene | Rn.10088 | ENTREZGENE |
| UniProt | F1LMY3 | ENTREZGENE, UniProtKB/TrEMBL |
| PTPRZ_RAT | UniProtKB/Swiss-Prot, ENTREZGENE | |
| UniProt Secondary | Q62621 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-01-13 | Ptprz1 | protein tyrosine phosphatase, receptor type Z1 | Ptprz1 | protein tyrosine phosphatase, receptor-type, Z polypeptide 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2003-04-09 | Ptprz1 | protein tyrosine phosphatase, receptor-type, Z polypeptide 1 | Protein tyrosine phosphatase, receptor-type, zeta polypeptide | Name updated | 629478 | APPROVED | |
| 2002-06-10 | Ptprz1 | Protein tyrosine phosphatase, receptor-type, zeta polypeptide | Symbol and Name status set to approved | 70586 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_physical_interaction | alternative splicing product phosphocan binds neural cell adhesion molecules, binding is mediated by phosphocan asparagine-linnked oligosaccharides | 729925 |
| gene_transcript | phosphocan is a product of alternative splicing that contains the Ptprz1 extracellular domain | 729925 |
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| More on Ptprz1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 3455 |
| Created: | 2000-05-25 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
