Chl1 (cell adhesion molecule L1-like) - Rat Genome Database

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Gene: Chl1 (cell adhesion molecule L1-like) Rattus norvegicus
Analyze
Symbol: Chl1
Name: cell adhesion molecule L1-like
RGD ID: 620122
Description: Predicted to enable protease binding activity. Involved in axon regeneration. Predicted to be located in apical part of cell and dendrite. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human CHL1 (cell adhesion molecule L1 like); INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Call; cell adhesion molecule with homology to L1CAM; cell adhesion molecule with homology to L1CAM (close homologue of L1); LOC108350698; uncharacterized LOC108350698
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84137,847,648 - 138,062,077 (+)NCBIGRCr8
mRatBN7.24136,291,504 - 136,505,830 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4136,291,463 - 136,503,265 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0470,269,414 - 70,331,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,252,366 - 70,330,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04134,915,211 - 135,121,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4125,052,335 - 125,267,922 (+)NCBICelera
Cytogenetic Map4q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Expression of regeneration-related molecules in injured and regenerating striatal and nigral neurons. Chaisuksunt V, etal., J Neurocytol 2003 Feb;32(2):161-83.
2. Axonal regeneration from CNS neurons in the cerebellum and brainstem of adult rats: correlation with the patterns of expression and distribution of messenger RNAs for L1, CHL1, c-jun and growth-associated protein-43. Chaisuksunt V, etal., Neuroscience 2000;100(1):87-108.
3. The close homologue of the neural adhesion molecule L1 (CHL1): patterns of expression and promotion of neurite outgrowth by heterophilic interactions. Hillenbrand R, etal., Eur J Neurosci 1999 Mar;11(3):813-26.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. An association between a missense polymorphism in the close homologue of L1 (CHL1, CALL) gene and schizophrenia. Sakurai K, etal., Mol Psychiatry 2002;7(4):412-5.
8. Increased expression of the close homolog of the adhesion molecule L1 in different cell types over time after rat spinal cord contusion. Wu J, etal., J Neurosci Res. 2011 May;89(5):628-38. doi: 10.1002/jnr.22598. Epub 2011 Feb 17.
9. Increase of close homolog of cell adhesion molecule L1 in primary afferent by nerve injury and the contribution to neuropathic pain. Yamanaka H, etal., J Comp Neurol. 2011 Jun 1;519(8):1597-615. doi: 10.1002/cne.22588.
Additional References at PubMed
PMID:12391163   PMID:14659567   PMID:14761956   PMID:15504324   PMID:15880726   PMID:21873635   PMID:23533145  


Genomics

Comparative Map Data
Chl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84137,847,648 - 138,062,077 (+)NCBIGRCr8
mRatBN7.24136,291,504 - 136,505,830 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4136,291,463 - 136,503,265 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0470,269,414 - 70,331,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,252,366 - 70,330,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04134,915,211 - 135,121,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4125,052,335 - 125,267,922 (+)NCBICelera
Cytogenetic Map4q41NCBI
CHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,763 - 409,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,763 - 409,417 (+)EnsemblGRCh38hg38GRCh38
GRCh373238,446 - 451,100 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363213,650 - 426,098 (+)NCBINCBI36Build 36hg18NCBI36
Build 343213,649 - 426,098NCBI
Celera3184,048 - 396,327 (+)NCBICelera
Cytogenetic Map3p26.3NCBI
HuRef3183,830 - 396,668 (+)NCBIHuRef
CHM1_13181,916 - 401,107 (+)NCBICHM1_1
T2T-CHM13v2.03188,582 - 401,277 (+)NCBIT2T-CHM13v2.0
Chl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396103,487,372 - 103,709,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6103,487,547 - 103,727,172 (+)EnsemblGRCm39 Ensembl
GRCm386103,510,584 - 103,733,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6103,510,586 - 103,750,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv376103,460,870 - 103,683,029 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366103,476,776 - 103,695,601 (+)NCBIMGSCv36mm8
Celera6105,381,168 - 105,594,453 (+)NCBICelera
Cytogenetic Map6E1NCBI
cM Map647.97NCBI
Chl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542112,763,287 - 12,958,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542112,763,432 - 12,957,852 (-)NCBIChiLan1.0ChiLan1.0
CHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22199,839 - 409,103 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13204,913 - 413,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03146,514 - 354,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13262,725 - 469,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3262,717 - 469,715 (+)Ensemblpanpan1.1panPan2
CHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12016,789,697 - 17,065,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12016,507,712 - 16,702,265 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02016,912,922 - 17,107,895 (-)NCBIUU_Cfam_GSD_1.0
Chl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049427,516,539 - 7,592,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936577474,143 - 544,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936577471,766 - 547,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1356,804,555 - 57,034,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11356,804,309 - 57,034,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21362,802,031 - 62,985,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12236,299,841 - 36,512,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2236,300,474 - 36,512,417 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041130,224,602 - 130,441,764 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477310,262,714 - 10,342,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477310,142,515 - 10,342,280 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chl1
1567 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:39
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000072372, ENSRNOT00000073039
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat

Markers in Region
RH143748  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24136,501,892 - 136,502,041 (+)MAPPERmRatBN7.2
Rnor_6.0470,330,596 - 70,330,744NCBIRnor6.0
Rnor_5.04135,120,343 - 135,120,491UniSTSRnor5.0
Celera4125,264,001 - 125,264,149UniSTS
RH 3.4 Map4836.23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 66 2 8 3
Low 3 22 24 8 15 8 8 8 6 15 27 7 8
Below cutoff 19 10 10 4 10 2 12 6 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF069775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000073039   ⟹   ENSRNOP00000067122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4136,291,562 - 136,503,265 (+)Ensembl
Rnor_6.0 Ensembl470,252,366 - 70,330,803 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107051   ⟹   ENSRNOP00000089187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4136,291,770 - 136,503,265 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116427   ⟹   ENSRNOP00000076353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4136,291,463 - 136,503,265 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117499   ⟹   ENSRNOP00000077702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4136,291,463 - 136,503,265 (+)Ensembl
RefSeq Acc Id: NM_001427108   ⟹   NP_001414037
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,895 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_039108773   ⟹   XP_038964701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,700 - 138,062,077 (+)NCBI
mRatBN7.24136,291,504 - 136,505,830 (+)NCBI
RefSeq Acc Id: XM_039108774   ⟹   XP_038964702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,753 - 138,062,077 (+)NCBI
mRatBN7.24136,292,076 - 136,505,830 (+)NCBI
RefSeq Acc Id: XM_039108775   ⟹   XP_038964703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,849,179 - 138,062,077 (+)NCBI
mRatBN7.24136,292,924 - 136,505,830 (+)NCBI
RefSeq Acc Id: XM_039108777   ⟹   XP_038964705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,700 - 138,062,077 (+)NCBI
mRatBN7.24136,291,506 - 136,505,830 (+)NCBI
RefSeq Acc Id: XM_063286786   ⟹   XP_063142856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,754 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_063286787   ⟹   XP_063142857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,848,976 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_063286788   ⟹   XP_063142858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,755 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_063286789   ⟹   XP_063142859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,848,934 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_063286790   ⟹   XP_063142860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,648 - 138,062,077 (+)NCBI
RefSeq Acc Id: XM_063286791   ⟹   XP_063142861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84137,847,756 - 138,062,077 (+)NCBI
RefSeq Acc Id: ENSRNOP00000067122   ⟸   ENSRNOT00000073039
RefSeq Acc Id: XP_038964701   ⟸   XM_039108773
- Peptide Label: isoform X1
- UniProtKB: M0RC17 (UniProtKB/TrEMBL),   A0A8I5Y8T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964705   ⟸   XM_039108777
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9A6 (UniProtKB/TrEMBL),   A0A8I5Y8T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964702   ⟸   XM_039108774
- Peptide Label: isoform X1
- UniProtKB: M0RC17 (UniProtKB/TrEMBL),   A0A8I5Y8T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964703   ⟸   XM_039108775
- Peptide Label: isoform X1
- UniProtKB: M0RC17 (UniProtKB/TrEMBL),   A0A8I5Y8T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076353   ⟸   ENSRNOT00000116427
RefSeq Acc Id: ENSRNOP00000077702   ⟸   ENSRNOT00000117499
RefSeq Acc Id: ENSRNOP00000089187   ⟸   ENSRNOT00000107051
RefSeq Acc Id: XP_063142860   ⟸   XM_063286790
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142856   ⟸   XM_063286786
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142858   ⟸   XM_063286788
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063142861   ⟸   XM_063286791
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001414037   ⟸   NM_001427108
- Peptide Label: precursor
- UniProtKB: A0A8I5Y8T8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142859   ⟸   XM_063286789
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063142857   ⟸   XM_063286787
- Peptide Label: isoform X2
Protein Domains
Fibronectin type-III   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RC17-F1-model_v2 AlphaFold M0RC17 1-1210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620122 AgrOrtholog
BioCyc Gene G2FUF-43500 BioCyc
Ensembl Genes ENSRNOG00000045771 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073039.4 UniProtKB/TrEMBL
  ENSRNOT00000107051.1 UniProtKB/TrEMBL
  ENSRNOT00000116427.1 UniProtKB/TrEMBL
  ENSRNOT00000117499.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Basigin-like UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Neurofascin/L1/NrCAM_C UniProtKB/TrEMBL
NCBI Gene 89828 ENTREZGENE
PANTHER BASIGIN, ISOFORM G UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
  PROTEIN TYROSINE KINASE 7 (INACTIVE) UniProtKB/TrEMBL
  PTHR10075 UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PhenoGen Chl1 PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045771 RatGTEx
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8I5Y8T8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCG7_RAT UniProtKB/TrEMBL
  A0A8I6A9A6 ENTREZGENE, UniProtKB/TrEMBL
  M0RC17 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Chl1  cell adhesion molecule L1-like  LOC108350698  uncharacterized LOC108350698  Data merged from RGD:11408653 737654 PROVISIONAL
2016-08-02 LOC108350698  uncharacterized LOC108350698      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-08-01 Chl1  cell adhesion molecule L1-like  Chl1  cell adhesion molecule with homology to L1CAM  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Chl1  cell adhesion molecule with homology to L1CAM    cell adhesion molecule with homology to L1CAM (close homologue of L1)  Name updated 1299863 APPROVED
2002-08-07 Chl1  cell adhesion molecule with homology to L1CAM (close homologue of L1)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process may be directly involved with neuronal regeneration 1303346