Cast (calpastatin) - Rat Genome Database

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Gene: Cast (calpastatin) Rattus norvegicus
Analyze
Symbol: Cast
Name: calpastatin
RGD ID: 2278
Description: Enables calcium-dependent cysteine-type endopeptidase inhibitor activity and protease binding activity. Involved in several processes, including animal organ development; egg activation; and myoblast fusion. Located in several cellular components, including cytoplasm; nucleus; and postsynaptic density. Used to study brain ischemia. Human ortholog(s) of this gene implicated in Parkinson's disease; autoimmune disease (multiple); congenital myasthenic syndrome 1A; and vasculitis. Orthologous to human CAST (calpastatin); PARTICIPATES IN the proteolytic pathway involving calcium-dependent proteases; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: calpain inhibitor; Calpastatin (probably multiple splicing products); MGC108997
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.223,973,112 - 4,082,658 (-)NCBI
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.021,452,111 - 1,561,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.021,422,022 - 1,530,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,495,048 - 1,608,477 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.121,497,323 - 1,558,604 (-)NCBI
Celera2468,414 - 578,127 (-)NCBICelera
Cytogenetic Map2q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
bucladesine  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
celastrol  (ISO)
cisplatin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diallyl disulfide  (ISO)
Diallyl sulfide  (ISO)
dichlorine  (EXP)
dihydroartemisinin  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
finasteride  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
gamma-hexachlorocyclohexane  (EXP)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
L-ascorbic acid  (EXP)
lipopolysaccharide  (EXP)
medroxyprogesterone acetate  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulindac  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA)
cytosol  (ISO)
endoplasmic reticulum  (ISO)
membrane  (IDA,ISO)
nucleus  (IDA)
postsynaptic density  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Allen AS and Satten GA, Am J Med Genet B Neuropsychiatr Genet. 2010 Jun 5;153B(4):973-9.
2. Arredondo J, etal., Am J Pathol. 2005 Dec;167(6):1531-44.
3. Barnoy S and Kosower NS, FEBS Lett 2003 Jul 10;546(2-3):213-7.
4. Barnoy S and Kosower NS, Int J Biochem Cell Biol. 2007;39(1):253-61. Epub 2006 Aug 30.
5. Blomgren K, etal., J Biol Chem. 1999 May 14;274(20):14046-52.
6. Chen JS, etal., Blood. 2001 Apr 1;97(7):2115-20.
7. De Tullio R, etal., FEBS Lett 1998 Jan 23;422(1):113-7.
8. Despres N, etal., J Clin Invest. 1995 Apr;95(4):1891-6.
9. Enns D, etal., Mol Cell Biochem. 2002 Dec;241(1-2):29-35.
10. Enns DL, etal., Eur J Appl Physiol. 2007 Jul;100(4):445-55. Epub 2007 Apr 12.
11. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
12. Groshong JS, etal., J Clin Invest. 2007 Oct;117(10):2903-12.
13. Haim K, etal., Reproduction. 2006 Jan;131(1):35-43.
14. Han F, etal., J Pharmacol Exp Ther. 2006 May;317(2):529-36. Epub 2006 Feb 8.
15. Hanna RA, etal., FEBS Lett. 2007 Jun 26;581(16):2894-8. Epub 2007 May 25.
16. Hanna RA, etal., Nature. 2008 Nov 20;456(7220):409-12. doi: 10.1038/nature07451.
17. Lee WJ, etal., Biochim Biophys Acta 1992 Jan 6;1129(2):251-3.
18. Li Y, etal., Exp Neurol. 2009 Dec;220(2):316-9. Epub 2009 Sep 12.
19. Liang B, etal., J Biol Chem. 2010 Sep 3;285(36):27737-44. Epub 2010 Jul 1.
20. Limaye PB, etal., Hepatology. 2006 Aug;44(2):379-88.
21. Matsushita Y, etal., Clin Exp Immunol. 2005 Feb;139(2):355-62.
22. Medana IM, etal., Neuropathol Appl Neurobiol. 2007 Apr;33(2):179-92.
23. Mochida S, etal., Cell Rep. 2016 Sep 13;16(11):2901-2913. doi: 10.1016/j.celrep.2016.08.020.
24. Moldoveanu T, etal., Nature. 2008 Nov 20;456(7220):404-8.
25. Mouatt-Prigent A, etal., J Comp Neurol. 2000 Apr 3;419(2):175-92.
26. NCBI rat LocusLink and RefSeq merged data July 26, 2002
27. OMIM Disease Annotation Pipeline
28. Rao MV, etal., J Neurosci. 2008 Nov 19;28(47):12241-54.
29. RGD automated data pipeline
30. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
31. RGD automated import pipeline for gene-chemical interactions
32. Ringger NC, etal., J Neurotrauma. 2004 Jul;21(7):829-41.
33. Sakamoto YR, etal., Curr Eye Res. 2000 Jul;21(1):571-80.
34. Salle V, etal., Lupus. 2004;13(10):800-4.
35. Saulot V, etal., J Autoimmun. 2002 Aug-Sep;19(1-2):55-61.
36. Shukla M, etal., Neurochem Int. 2006 Jan;48(2):108-13. Epub 2005 Oct 19.
37. Singh RB and Dhalla NS, Can J Physiol Pharmacol. 2010 Mar;88(3):388-97.
38. Stifanese R, etal., Arch Biochem Biophys. 2008 Nov 15;479(2):145-52. Epub 2008 Sep 13.
39. Sun M, etal., Neurochem Int. 2010 Mar;56(4):634-41. Epub 2010 Jan 29.
40. Surendran S, etal., Neurochem Int. 2005 Jun;46(8):595-9. Epub 2005 Apr 7.
41. Wei W, etal., Am J Physiol Regul Integr Comp Physiol. 2005 Mar;288(3):R580-90. Epub 2004 Nov 24.
42. Wingrave JM, etal., J Neurotrauma. 2004 Sep;21(9):1240-54.
43. Yasuoka H, etal., Ryumachi. 1997 Jun;37(3):458-66.
Additional References at PubMed
PMID:2015306   PMID:2407243   PMID:11090425   PMID:11673859   PMID:12477932   PMID:14559243   PMID:15044459   PMID:15132950   PMID:15543935   PMID:15904894   PMID:16641100   PMID:17570336  
PMID:17712625   PMID:18544539   PMID:18599308   PMID:19318376   PMID:21849499   PMID:22658674   PMID:25468996  


Genomics

Comparative Map Data
Cast
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.223,973,112 - 4,082,658 (-)NCBI
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.021,452,111 - 1,561,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.021,422,022 - 1,530,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.421,495,048 - 1,608,477 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.121,497,323 - 1,558,604 (-)NCBI
Celera2468,414 - 578,127 (-)NCBICelera
Cytogenetic Map2q11NCBI
CAST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl596,525,267 - 96,779,595 (+)EnsemblGRCh38hg38GRCh38
GRCh38596,662,037 - 96,774,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37595,997,741 - 96,110,387 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36596,023,697 - 96,136,143 (+)NCBINCBI36hg18NCBI36
Build 34596,089,768 - 96,134,279NCBI
Celera591,882,129 - 91,994,809 (+)NCBI
Cytogenetic Map5q15NCBI
HuRef591,188,220 - 91,300,638 (+)NCBIHuRef
CHM1_1595,430,442 - 95,543,106 (+)NCBICHM1_1
Cast
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,840,485 - 74,956,993 (-)NCBIGRCm39mm39
GRCm39 Ensembl1374,840,487 - 74,956,929 (-)Ensembl
GRCm381374,692,366 - 74,808,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,692,368 - 74,808,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,831,734 - 74,945,369 (-)NCBIGRCm37mm9NCBIm37
MGSCv361375,160,288 - 75,273,923 (-)NCBImm8
Celera1377,024,381 - 77,127,605 (-)NCBICelera
Cytogenetic Map13C1NCBI
Cast
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541815,862,729 - 15,916,169 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541815,859,951 - 15,974,141 (-)NCBIChiLan1.0ChiLan1.0
CAST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1597,526,828 - 97,639,645 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl597,527,071 - 97,636,650 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0591,972,572 - 92,084,657 (+)NCBIMhudiblu_PPA_v0panPan3
CAST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1312,920,514 - 13,031,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl312,922,453 - 13,031,959 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha314,260,972 - 14,372,507 (-)NCBI
ROS_Cfam_1.0312,802,911 - 12,914,616 (-)NCBI
UMICH_Zoey_3.1312,764,153 - 12,875,875 (-)NCBI
UNSW_CanFamBas_1.0312,760,328 - 12,871,469 (-)NCBI
UU_Cfam_GSD_1.0312,958,745 - 13,070,416 (-)NCBI
Cast
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213168,504,231 - 168,612,822 (-)NCBI
SpeTri2.0NW_0049365236,688,153 - 6,798,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2103,255,630 - 103,378,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12103,255,738 - 103,378,623 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22106,934,106 - 107,044,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.22107,095,361 - 107,128,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap2q2.1-q2.4NCBI
CAST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1490,496,867 - 90,607,019 (+)NCBI
ChlSab1.1 Ensembl490,497,754 - 90,605,481 (+)Ensembl
Vero_WHO_p1.0NW_02366604939,150,544 - 39,263,306 (+)NCBI
Cast
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474315,265,930 - 15,405,904 (+)NCBI

Position Markers
D2Got364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.224,076,761 - 4,077,019 (+)MAPPER
Rnor_6.021,555,761 - 1,556,018NCBIRnor6.0
Rnor_5.021,525,015 - 1,525,272UniSTSRnor5.0
RGSC_v3.421,602,774 - 1,603,031UniSTSRGSC3.4
Celera2572,424 - 572,681UniSTS
Cytogenetic Map2q11UniSTS
AU049142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.224,037,398 - 4,037,645 (+)MAPPER
Rnor_6.021,516,399 - 1,516,647NCBIRnor6.0
Rnor_5.021,485,699 - 1,485,947UniSTSRnor5.0
RGSC_v3.421,563,412 - 1,563,660UniSTSRGSC3.4
Celera2533,573 - 533,821UniSTS
Cytogenetic Map2q11UniSTS
RH127627  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24151,592,226 - 151,592,428 (+)MAPPER
mRatBN7.223,973,381 - 3,973,584 (+)MAPPER
Rnor_6.021,452,381 - 1,452,583NCBIRnor6.0
Rnor_6.04150,468,883 - 150,469,084NCBIRnor6.0
Rnor_5.04216,392,744 - 216,392,945UniSTSRnor5.0
Rnor_5.021,422,292 - 1,422,494UniSTSRnor5.0
RGSC_v3.44154,722,124 - 154,722,325UniSTSRGSC3.4
RGSC_v3.421,495,318 - 1,495,520UniSTSRGSC3.4
Celera2468,684 - 468,886UniSTS
Celera4140,461,933 - 140,462,134UniSTS
Cytogenetic Map4q42UniSTS
Cytogenetic Map2q11UniSTS
RH138573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.223,982,392 - 3,982,625 (+)MAPPER
Rnor_6.021,461,392 - 1,461,624NCBIRnor6.0
Rnor_5.021,431,303 - 1,431,535UniSTSRnor5.0
RGSC_v3.421,504,329 - 1,504,561UniSTSRGSC3.4
Celera2478,525 - 478,757UniSTS
Cytogenetic Map2q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135167060Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141179397Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2786
Count of miRNA genes:310
Interacting mature miRNAs:399
Transcripts:ENSRNOT00000014709, ENSRNOT00000062052, ENSRNOT00000062054, ENSRNOT00000062055
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 54 35 41 11 8
Low 1 20
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001033716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF346597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF346598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ186629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ287975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014709   ⟹   ENSRNOP00000014709
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl21,454,389 - 1,511,591 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000062052   ⟹   ENSRNOP00000058756
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000062054   ⟹   ENSRNOP00000058758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000062055   ⟹   ENSRNOP00000058759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl21,452,116 - 1,561,464 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087906   ⟹   ENSRNOP00000073017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl21,454,387 - 1,511,591 (-)Ensembl
RefSeq Acc Id: NM_001033715   ⟹   NP_001028887
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,465 (-)NCBI
Rnor_6.021,452,111 - 1,561,464 (-)NCBI
Rnor_5.021,422,022 - 1,530,917 (-)NCBI
RGSC_v3.421,495,048 - 1,608,477 (-)RGD
Celera2468,414 - 578,127 (-)RGD
Sequence:
RefSeq Acc Id: NM_001033716   ⟹   NP_001028888
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,465 (-)NCBI
Rnor_6.021,452,111 - 1,561,464 (-)NCBI
Rnor_5.021,422,022 - 1,530,917 (-)NCBI
RGSC_v3.421,495,048 - 1,608,477 (-)RGD
Celera2468,414 - 578,127 (-)RGD
Sequence:
RefSeq Acc Id: NM_053295   ⟹   NP_445747
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,465 (-)NCBI
Rnor_6.021,452,111 - 1,561,464 (-)NCBI
Rnor_5.021,422,022 - 1,530,917 (-)NCBI
RGSC_v3.421,495,048 - 1,608,477 (-)RGD
Celera2468,414 - 578,127 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231698   ⟹   XP_006231760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,081,773 (-)NCBI
Rnor_6.021,452,111 - 1,561,216 (-)NCBI
Rnor_5.021,422,022 - 1,530,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231699   ⟹   XP_006231761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,658 (-)NCBI
Rnor_6.021,452,111 - 1,561,669 (-)NCBI
Rnor_5.021,422,022 - 1,530,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590647   ⟹   XP_017446136
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,017,354 (-)NCBI
Rnor_6.021,452,111 - 1,497,340 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101791   ⟹   XP_038957719
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,658 (-)NCBI
RefSeq Acc Id: XM_039101792   ⟹   XP_038957720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,657 (-)NCBI
RefSeq Acc Id: XM_039101793   ⟹   XP_038957721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.223,973,112 - 4,082,658 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001028887 (Get FASTA)   NCBI Sequence Viewer  
  NP_001028888 (Get FASTA)   NCBI Sequence Viewer  
  NP_445747 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231760 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231761 (Get FASTA)   NCBI Sequence Viewer  
  XP_017446136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957719 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957720 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957721 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91239 (Get FASTA)   NCBI Sequence Viewer  
  AAK29411 (Get FASTA)   NCBI Sequence Viewer  
  AAK29412 (Get FASTA)   NCBI Sequence Viewer  
  ABA86879 (Get FASTA)   NCBI Sequence Viewer  
  ABA86880 (Get FASTA)   NCBI Sequence Viewer  
  ABA86881 (Get FASTA)   NCBI Sequence Viewer  
  ABA86882 (Get FASTA)   NCBI Sequence Viewer  
  ABA86883 (Get FASTA)   NCBI Sequence Viewer  
  ABA86884 (Get FASTA)   NCBI Sequence Viewer  
  ABB90254 (Get FASTA)   NCBI Sequence Viewer  
  CAA73915 (Get FASTA)   NCBI Sequence Viewer  
  CAA73916 (Get FASTA)   NCBI Sequence Viewer  
  CAA73917 (Get FASTA)   NCBI Sequence Viewer  
  CAA73918 (Get FASTA)   NCBI Sequence Viewer  
  CAA73919 (Get FASTA)   NCBI Sequence Viewer  
  EDM09898 (Get FASTA)   NCBI Sequence Viewer  
  EDM09899 (Get FASTA)   NCBI Sequence Viewer  
  EDM09900 (Get FASTA)   NCBI Sequence Viewer  
  EDM09901 (Get FASTA)   NCBI Sequence Viewer  
  EDM09902 (Get FASTA)   NCBI Sequence Viewer  
  EDM09903 (Get FASTA)   NCBI Sequence Viewer  
  EDM09904 (Get FASTA)   NCBI Sequence Viewer  
  P27321 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_445747   ⟸   NM_053295
- Peptide Label: isoform a
- UniProtKB: P27321 (UniProtKB/Swiss-Prot),   F1LPH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001028887   ⟸   NM_001033715
- Peptide Label: isoform b
- UniProtKB: P27321 (UniProtKB/Swiss-Prot),   A0A0G2JSY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001028888   ⟸   NM_001033716
- Peptide Label: isoform c
- UniProtKB: P27321 (UniProtKB/Swiss-Prot),   D3ZL24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231761   ⟸   XM_006231699
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006231760   ⟸   XM_006231698
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017446136   ⟸   XM_017590647
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000014709   ⟸   ENSRNOT00000014709
RefSeq Acc Id: ENSRNOP00000073017   ⟸   ENSRNOT00000087906
RefSeq Acc Id: ENSRNOP00000058759   ⟸   ENSRNOT00000062055
RefSeq Acc Id: ENSRNOP00000058758   ⟸   ENSRNOT00000062054
RefSeq Acc Id: ENSRNOP00000058756   ⟸   ENSRNOT00000062052
RefSeq Acc Id: XP_038957721   ⟸   XM_039101793
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038957719   ⟸   XM_039101791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038957720   ⟸   XM_039101792
- Peptide Label: isoform X4

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691031
Promoter ID:EPDNEW_R1555
Type:initiation region
Name:Cast_1
Description:calpastatin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.021,561,419 - 1,561,479EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2278 AgrOrtholog
Ensembl Genes ENSRNOG00000010286 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014709 UniProtKB/TrEMBL
  ENSRNOP00000058756 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000058758 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000058759 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073017 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014709 UniProtKB/TrEMBL
  ENSRNOT00000062052 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000062054 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000062055 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000087906 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7097131 IMAGE-MGC_LOAD
  IMAGE:7324026 IMAGE-MGC_LOAD
InterPro Calpastatin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_inh_calpain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108997 IMAGE-MGC_LOAD
  MGC:91597 IMAGE-MGC_LOAD
NCBI Gene 25403 ENTREZGENE
PANTHER PTHR10077 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calpain_inhib UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cast PhenoGen
UniProt A0A0G2JSY2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZL24 ENTREZGENE, UniProtKB/TrEMBL
  D4A129_RAT UniProtKB/TrEMBL
  F1LPH1 ENTREZGENE, UniProtKB/TrEMBL
  ICAL_RAT UniProtKB/Swiss-Prot
  O55154_RAT UniProtKB/TrEMBL
  O55155_RAT UniProtKB/TrEMBL
  P27321 ENTREZGENE
UniProt Secondary A5GXY4 UniProtKB/Swiss-Prot
  A5GXY5 UniProtKB/Swiss-Prot
  A5GXY6 UniProtKB/Swiss-Prot
  A5GXY7 UniProtKB/Swiss-Prot
  A5GXY8 UniProtKB/Swiss-Prot
  A5GXY9 UniProtKB/Swiss-Prot
  A5GXZ7 UniProtKB/Swiss-Prot
  O55151 UniProtKB/Swiss-Prot
  O55152 UniProtKB/Swiss-Prot
  O55153 UniProtKB/Swiss-Prot
  Q5BK19 UniProtKB/Swiss-Prot
  Q99MG1 UniProtKB/Swiss-Prot
  Q99MG2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Cast  Calpastatin      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process degradation is required for myoblast fusion during differentiation 1298731
gene_transcript multiple isoforms exist in brain due to alternative transcript processing 1298730