Mir21 (microRNA 21) - Rat Genome Database

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Gene: Mir21 (microRNA 21) Rattus norvegicus
Analyze
Symbol: Mir21
Name: microRNA 21
RGD ID: 2325598
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Involved in several processes, including cellular response to mechanical stimulus; negative regulation of programmed cell death; and positive regulation of intracellular signal transduction. Located in extracellular vesicle. Used to study glioblastoma; status epilepticus; and thyroid cancer. Biomarker of several diseases, including cerebral infarction; diabetic retinopathy; pulmonary hypertension; sciatic neuropathy; and status epilepticus. Orthologous to human MIR21 (microRNA 21); INTERACTS WITH (R)-lipoic acid; 17beta-estradiol; 2,5-hexanedione.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-21; rno-mir-21
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81071,902,600 - 71,902,691 (-)NCBIGRCr8
mRatBN7.21071,405,257 - 71,405,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,405,257 - 71,405,348 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,026,707 - 76,026,798 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01075,531,582 - 75,531,673 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01070,996,132 - 70,996,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01073,902,210 - 73,902,301 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,902,210 - 73,902,301 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01076,197,081 - 76,197,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1070,326,375 - 70,326,466 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Mir21RatAcute Lung Injury  IEP 41410885RNA:increased expression:lungRGD 
Mir21Ratacute myocardial infarction  ISORGD:134926521081515miRNA:increased expression:peripheral blood mononuclear cell, plasmaRGD 
Mir21Ratacute myocardial infarction  ISORGD:1349265401851053RNA:decreased expression:serumRGD 
Mir21Ratalcohol use disorder sexual_dimorphism ISORGD:1608349598099545miRNA:decreased expression: cerebral cortex (mouse)RGD 
Mir21RatAlcoholic Intoxication sexual_dimorphism ISORGD:1349265598099545miRNA:decreased expression:blood plasma (human, female)RGD 
Mir21Ratallergic contact dermatitis treatmentIEP 41404666 RGD 
Mir21Ratanaplastic thyroid carcinoma  ISORGD:134926541404697RNA:increased expression:thyroid gland:RGD 
Mir21RatAngina Pectoris  ISORGD:134926521081515miRNA:increased expression:peripheral blood mononuclear cell, plasmaRGD 
Mir21Ratatherosclerosis severityISORGD:134926521081515miRNA:increased expression:peripheral blood mononuclear cell, plasmaRGD 
Mir21RatAtrial Remodeling treatmentIEP 41404716 RGD 
Mir21Ratautoimmune uveitis amelioratesISORGD:160834941404699 RGD 
Mir21Ratbrain glioma  ISORGD:1349265152998875human cells in mouse model; RNA:increased expression:brain (human)RGD 
Mir21Ratbreast cancer  IEP 152025189RNA:increased expression:thoracic lymph nodeRGD 
Mir21Ratbreast cancer severityISORGD:13492659068941miRNA:increased expression:breast (human)RGDPMID:18812439|REF_RGD_ID:152998878
Mir21Ratbreast cancer  ISORGD:1349265152998900RNA:increased expression:blood serum (human)RGD 
Mir21Ratbreast cancer  ISORGD:1349265153297766RNA:increased expression:peripheral blood mononuclear cell (human)RGD 
Mir21RatBurkitt lymphoma treatmentISORGD:134926541404643 RGD 
Mir21RatCardio-Renal Syndrome amelioratesIMP 41410821 RGD 
Mir21RatCardiomegaly  ISORGD:160834941404711RNA:increased expression:heart:RGD 
Mir21Ratcerebral infarction  IEP 41410884RNA:increased expression:brainRGD 
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Mir21RatJoubert syndrome 1  ISORGD:13492658554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:28492532
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Mir21RatCardiomegaly  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:17525252
Mir21RatChemical and Drug Induced Liver Injury  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:28545106
Mir21Ratcongestive heart failure  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:36071497
Mir21RatDisease Progression  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:27816459
Mir21Ratendometriosis  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:21063030
Mir21RatEsophageal Neoplasms  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:21248297
Mir21RatFibrosis  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:23469132
Mir21Ratheart disease  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:29355689
Mir21RatInflammation  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:29355689
Mir21Ratkidney disease  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:23469132
Mir21RatLung Neoplasms  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:27323401
Mir21RatMicrosatellite Instability  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:25701956
Mir21RatMyocardial Reperfusion Injury  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:22050707
Mir21RatNeoplasm Invasiveness  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:26101800|PMID:29501572
Mir21RatNeoplasm Metastasis  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:26101800
Mir21RatNeoplastic Cell Transformation  ISORGD:134926511554173CTD Direct Evidence: marker/mechanism|therapeuticCTDPMID:26101800|PMID:27323401|PMID:27344173|PMID:28881718|PMID:29501572
Mir21Ratobesity  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:23954404
Mir21RatProstatic Neoplasms  ISORGD:134926511554173CTD Direct Evidence: marker/mechanismCTDPMID:23272133
Mir21RatWeight Gain  ISORGD:160834911554173CTD Direct Evidence: therapeuticCTDPMID:26996129
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Original Reference(s)
Mir21Rat(-)-Arctigenin decreases expressionISORGD:13492656480464arctigenin results in decreased expression of MIR21 mRNACTDPMID:25380086
Mir21Rat(-)-Arctigenin multiple interactionsISORGD:13492656480464arctigenin inhibits the reaction [Quercetin results in increased expression of MIR21 mRNA]CTDPMID:25380086
Mir21Rat(R)-lipoic acid multiple interactionsEXP 6480464Cyclosporine inhibits the reaction [Thioctic Acid promotes the reaction [Acetic Acid results in increased expression more ...CTDPMID:26276312
Mir21Rat1,2-dichloroethane increases expressionISORGD:16083496480464ethylene dichloride results in increased expression of MIR21A mRNACTDPMID:28960355
Mir21Rat17beta-estradiol multiple interactionsISORGD:13492656480464afimoxifene inhibits the reaction [Estradiol results in decreased expression of MIR21 mRNA]; Cycloheximide inhibits the more ...CTDPMID:19264808|PMID:20302909|PMID:22403704|PMID:23052036|PMID:24758408
Mir21Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of MIR21 mRNACTDPMID:26945725
Mir21Rat17beta-estradiol decreases expressionISORGD:13492656480464Estradiol results in decreased expression of MIR21 mRNACTDPMID:19264808|PMID:20302909|PMID:22403704|PMID:23052036|PMID:24758408|PMID:24877718
Mir21Rat17beta-hydroxy-5alpha-androstan-3-one multiple interactionsISORGD:13492656480464bicalutamide inhibits the reaction [Dihydrotestosterone results in increased expression of MIR21 mRNA]; Cycloheximide inhibits the more ...CTDPMID:23052036
Mir21Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISORGD:13492656480464Dihydrotestosterone results in increased expression of MIR21 mRNACTDPMID:23052036|PMID:29581250
Mir21Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:16083496480464Tetrachlorodibenzodioxin results in increased expression of MIR21A mRNACTDPMID:37318321
Mir21Rat2,3-bis(4-hydroxyphenyl)propionitrile decreases expressionISORGD:134926564804642,3-bis(4-hydroxyphenyl)-propionitrile results in decreased expression of MIR21 mRNACTDPMID:19264808
Mir21Rat2,5-hexanedione decreases expressionEXP 64804642,5-hexanedione results in decreased expression of MIR21 mRNACTDPMID:31760062
Mir21Rat2,5-hexanedione increases expressionEXP 64804642,5-hexanedione results in increased expression of MIR21 mRNACTDPMID:31760062
Mir21Rat2-acetamidofluorene increases expressionEXP 64804642-Acetylaminofluorene results in increased expression of MIR21 mRNACTDPMID:19167416
Mir21Rat2-hydroxypropanoic acid increases expressionISORGD:13492656480464Lactic Acid results in increased expression of MIR21 mRNACTDPMID:30851411
Mir21Rat3,7-dihydropurine-6-thione increases expressionEXP 6480464Mercaptopurine results in increased expression of MIR21 mRNACTDPMID:23358152
Mir21Rat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin results in decreased expression of MIR21 mRNACTDPMID:34461274
Mir21Rat4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one increases expressionISORGD:134926564804644-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in increased expression of MIR21 mRNACTDPMID:32326378
Mir21Rat4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one multiple interactionsISORGD:13492656480464MIR21 mRNA affects the reaction [4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in decreased expression of MSH2 protein]CTDPMID:32326378
Mir21Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of MIR21 mRNACTDPMID:39441382

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Biological Process
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Original Reference(s)
Mir21RatBMP signaling pathway involved_inISORGD:13492651624291 PMID:18548003RGDPMID:18548003
Mir21Ratcellular response to angiotensin  IEP 41404711 RGD 
Mir21Ratcellular response to decreased oxygen levels acts_upstream_of_or_withinISORGD:16083491624291 PMID:19147652RGDPMID:19147652
Mir21Ratcellular response to dexamethasone stimulus acts_upstream_of_or_withinISORGD:16083491624291 PMID:24391219RGDPMID:24391219
Mir21Ratcellular response to gamma radiation involved_inISORGD:13492651624291 PMID:19826040RGDPMID:19826040
Mir21Ratcellular response to glucose stimulus  IEP 41410820 RGD 
Mir21Ratcellular response to granulocyte macrophage colony-stimulating factor stimulus acts_upstream_of_or_withinISORGD:16083491624291 PMID:24391219RGDPMID:24391219
Mir21Ratcellular response to hydrogen peroxide  IEP 41404719 RGD 
Mir21Ratcellular response to interleukin-6 acts_upstream_of_or_withinISORGD:16083491624291 PMID:24391219RGDPMID:24391219
Mir21Ratcellular response to ionizing radiation involved_inISORGD:13492651624291 PMID:22836756RGDPMID:22836756
Mir21Ratcellular response to leukemia inhibitory factor acts_upstream_of_or_withinISORGD:16083491624291 PMID:20439489RGDPMID:20439489
Mir21Ratcellular response to lipopolysaccharide  IEP 41410885 RGD 
Mir21Ratcellular response to lipopolysaccharide involved_inISORGD:13492651624291 PMID:19946272, PMID:29039542RGDPMID:19946272|PMID:29039542
Mir21Ratcellular response to mechanical stimulus  IEP 41404703 RGD 
Mir21Ratcellular response to reactive oxygen species  IMP 152025267 RGD 
Mir21Ratcellular response to transforming growth factor beta stimulus acts_upstream_of_or_withinISORGD:16083491624291 PMID:24391219RGDPMID:24391219
Mir21Ratendothelial tube morphogenesis involved_inISORGD:13492651624291 PMID:21347332RGDPMID:21347332
Mir21Ratepithelial to mesenchymal transition involved in cardiac fibroblast development involved_inISORGD:13492651624291 PMID:23441172RGDPMID:23441172
Mir21Ratfemale pregnancy acts_upstream_of_or_withinISORGD:16083491624291 PMID:18556655RGDPMID:18556655
Mir21Ratinflammatory response to antigenic stimulus acts_upstream_of_or_withinISORGD:16083491624291 PMID:22517757RGDPMID:22517757
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Cellular Component

  
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Original Reference(s)
Mir21Ratcytoplasm located_inISORGD:13492651624291 PMID:23657402RGDPMID:23657402
Mir21Ratextracellular exosome located_inISORGD:13492651624291 PMID:28159509, PMID:31926946RGDPMID:28159509|PMID:31926946
Mir21Ratextracellular space located_inISORGD:13492651624291 PMID:26646931RGDPMID:26646931
Mir21Ratextracellular vesicle  IDA 41410823MMO:0000110RGD 
Mir21RatRISC complex part_ofISORGD:16083491624291 PMID:22503104, PMID:23185045RGDPMID:22503104|PMID:23185045

Molecular Function

  
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Original Reference(s)
Mir21RatmRNA 3'-UTR binding enablesISORGD:13492651624291 PMID:19578724, PMID:21376256, PMID:21562928, PMID:31611175RGDPMID:19578724|PMID:21376256|PMID:21562928|PMID:31611175
Mir21RatmRNA 3'-UTR binding enablesISORGD:16083491624291 PMID:25504627RGDPMID:25504627
Mir21RatmRNA base-pairing post-transcriptional repressor activity enablesISORGD:13492651624291 PMID:16762633, PMID:17363372, PMID:17968323, PMID:18270520, PMID:18372920, PMID:18384814, PMID:18591254, PMID:18829576, PMID:19013014, PMID:19253296, PMID:19302977, PMID:19546886, PMID:19559015, more ...RGDPMID:16762633|PMID:17363372|PMID:17968323|PMID:18270520|PMID:18372920|PMID:18384814|PMID:18591254|PMID:18829576|PMID:19013014|PMID:19253296|PMID:19302977|PMID:19546886|PMID:19559015|PMID:19578724|PMID:19816956|PMID:19826040|PMID:20371612|PMID:20460403|PMID:20483747|PMID:20533548|PMID:20693317|PMID:20826792|PMID:21078976|PMID:21131358|PMID:21170291|PMID:21219636|PMID:21317927|PMID:21328460|PMID:21347332|PMID:21562928|PMID:21636785|PMID:21817107|PMID:21820586|PMID:22001440|PMID:22034194|PMID:22158624|PMID:22286305|PMID:22316494|PMID:22387553|PMID:22573493|PMID:22618231|PMID:22836756|PMID:22879939|PMID:23239100|PMID:23442323|PMID:23496142|PMID:23633945|PMID:23657402|PMID:24012640|PMID:24098708|PMID:24112539|PMID:24155920|PMID:24237305|PMID:24327270|PMID:24577233|PMID:24699315|PMID:24895913|PMID:25107449|PMID:25118289|PMID:25327529|PMID:27571873|PMID:27708252|PMID:27895788|PMID:28798470|PMID:29039542|PMID:29696468|PMID:30106099|PMID:31611175


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Reference Title
Reference Citation
1. Two-stage genome-wide methylation profiling in childhood-onset Crohn's Disease implicates epigenetic alterations at the VMP1/MIR21 and HLA loci. Adams AT, etal., Inflamm Bowel Dis. 2014 Oct;20(10):1784-93. doi: 10.1097/MIB.0000000000000179.
2. Anti-inflammatory effects of miR-21 in the macrophage response to peritonitis. Barnett RE, etal., J Leukoc Biol. 2016 Feb;99(2):361-71. doi: 10.1189/jlb.4A1014-489R. Epub 2015 Sep 17.
3. MicroRNA-21 protects neurons from ischemic death. Buller B, etal., FEBS J. 2010 Oct;277(20):4299-307. doi: 10.1111/j.1742-4658.2010.07818.x. Epub 2010 Sep 14.
4. Up-Regulation of miR-21 Is Associated with Cervicitis and Human Papillomavirus Infection in Cervical Tissues. Bumrungthai S, etal., PLoS One. 2015 May 26;10(5):e0127109. doi: 10.1371/journal.pone.0127109. eCollection 2015.
5. Dual Role of MiR-21-Mediated Signaling in HUVECs and Rat Surgical Flap under Normoxia and Hypoxia Condition. Chang CH, etal., Int J Mol Sci. 2017 Sep 7;18(9). pii: ijms18091917. doi: 10.3390/ijms18091917.
6. MiR-320a contributes to atherogenesis by augmenting multiple risk factors and down-regulating SRF. Chen C, etal., J Cell Mol Med. 2015 May;19(5):970-85. doi: 10.1111/jcmm.12483. Epub 2015 Feb 27.
7. Overexpression of IL-9 induced by STAT3 phosphorylation is mediated by miR-155 and miR-21 in chronic lymphocytic leukemia. Chen N, etal., Oncol Rep. 2018 Jun;39(6):3064-3072. doi: 10.3892/or.2018.6367. Epub 2018 Apr 12.
8. MicroRNA-21 protects against the H(2)O(2)-induced injury on cardiac myocytes via its target gene PDCD4. Cheng Y, etal., J Mol Cell Cardiol. 2009 Jul;47(1):5-14. doi: 10.1016/j.yjmcc.2009.01.008. Epub 2009 Jan 27.
9. MicroRNA-21 regulates peroxisome proliferator-activated receptor alpha, a molecular mechanism of cardiac pathology in Cardiorenal Syndrome Type 4. Chuppa S, etal., Kidney Int. 2018 Feb;93(2):375-389. doi: 10.1016/j.kint.2017.05.014. Epub 2017 Jul 29.
10. Activation of the oncogenic miR-21-5p promotes HCV replication and steatosis induced by the viral core 3a protein. Clément S, etal., Liver Int. 2019 Jul;39(7):1226-1236. doi: 10.1111/liv.14112. Epub 2019 Apr 16.
11. Circulating Plasma Levels of MicroRNA-21 and MicroRNA-221 Are Potential Diagnostic Markers for Primary Intrahepatic Cholangiocarcinoma. Correa-Gallego C, etal., PLoS One. 2016 Sep 29;11(9):e0163699. doi: 10.1371/journal.pone.0163699. eCollection 2016.
12. Upregulation of miR-21 by Ras in vivo and its role in tumor growth. Frezzetti D, etal., Oncogene. 2011 Jan 20;30(3):275-86. doi: 10.1038/onc.2010.416. Epub 2010 Oct 18.
13. miR-21 Expression Determines the Early Vaccine Immunity Induced by LdCen-/- Immunization. Gannavaram S, etal., Front Immunol. 2019 Sep 24;10:2273. doi: 10.3389/fimmu.2019.02273. eCollection 2019.
14. MicroRNA-21 contributes to high glucose-induced fibrosis in peritoneal mesothelial cells in rat models by activation of the Ras-MAPK signaling pathway via Sprouty-1. Gao Q, etal., J Cell Physiol. 2019 May;234(5):5915-5925. doi: 10.1002/jcp.26941. Epub 2018 Dec 4.
15. CCL20 Displays Antimicrobial Activity Against Cryptosporidium parvum, but Its Expression Is Reduced During Infection in the Intestine of Neonatal Mice. Guesdon W, etal., J Infect Dis. 2015 Oct 15;212(8):1332-40. doi: 10.1093/infdis/jiv206. Epub 2015 Apr 2.
16. MiR-21 confers resistance against CVB3-induced myocarditis by inhibiting PDCD4-mediated apoptosis. He J, etal., Clin Invest Med. 2013 Apr 1;36(2):E103-11. doi: 10.25011/cim.v36i2.19573.
17. Methyl helicterte ameliorates liver fibrosis by regulating miR-21-mediated ERK and TGF-β1/Smads pathways. Huang Q, etal., Int Immunopharmacol. 2019 Jan;66:41-51. doi: 10.1016/j.intimp.2018.11.006. Epub 2018 Nov 9.
18. Circulating MicroRNAs in Extracellular Vesicles as Potential Biomarkers of Alcohol-Induced Neuroinflammation in Adolescence: Gender Differences. Ibáñez F, etal., Int J Mol Sci. 2020 Sep 14;21(18):6730. doi: 10.3390/ijms21186730.
19. Prognostic Significance of MicroRNA-21 Expression in Patients with Unresectable Metastatic Colon Cancer. Iseki Y, etal., Anticancer Res. 2016 Oct;36(10):5145-5151. doi: 10.21873/anticanres.11084.
20. MicroRNA-21 Is Required for Local and Remote Ischemic Preconditioning in Multiple Organ Protection Against Sepsis. Jia P, etal., Crit Care Med. 2017 Jul;45(7):e703-e710. doi: 10.1097/CCM.0000000000002363.
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PMID:14691248   PMID:16381832   PMID:16766679   PMID:17604727   PMID:17805466   PMID:18556655   PMID:18723672   PMID:18850008   PMID:19147652   PMID:20086200   PMID:20219857   PMID:20403161  
PMID:20439489   PMID:20498256   PMID:21162128   PMID:21698002   PMID:21704009   PMID:21852586   PMID:21853131   PMID:22022489   PMID:22503104   PMID:22517757   PMID:22790595   PMID:22907769  
PMID:23097335   PMID:23154340   PMID:23185045   PMID:23473787   PMID:23647386   PMID:23665014   PMID:23902531   PMID:23978520   PMID:24161401   PMID:24205035   PMID:24237305   PMID:24388835  
PMID:24391219   PMID:24492999   PMID:24556821   PMID:24562307   PMID:24676391   PMID:24743145   PMID:24903275   PMID:24913635   PMID:24951588   PMID:25106556   PMID:25108037   PMID:25156787  
PMID:25483877   PMID:25504627   PMID:25536091   PMID:25598202   PMID:25633833   PMID:25704671   PMID:25840830   PMID:25879024   PMID:25973032   PMID:26302266   PMID:26323253   PMID:26380976  
PMID:26415649   PMID:26621219   PMID:26830133   PMID:26862785   PMID:27053343   PMID:27075111   PMID:27152763   PMID:27226339   PMID:27336721   PMID:27429986   PMID:27634014   PMID:27680680  
PMID:27708252   PMID:27803763   PMID:27979484   PMID:27999792   PMID:28214900   PMID:28335740   PMID:28347692   PMID:28374893   PMID:28402262   PMID:28473352   PMID:28656242   PMID:28731181  
PMID:28807003   PMID:28939387   PMID:28971796   PMID:29028768   PMID:29115610   PMID:29248491   PMID:29355689   PMID:29436647   PMID:29444190   PMID:29461599   PMID:29627835   PMID:29696468  
PMID:29709341   PMID:29795410   PMID:29925839   PMID:29968904   PMID:30089893   PMID:30132829   PMID:30256395   PMID:30463111   PMID:30504734   PMID:30536340   PMID:30657727   PMID:30830529  
PMID:30861181   PMID:30871773   PMID:30915769   PMID:31002122   PMID:31115556   PMID:31161659   PMID:31210327   PMID:31223614   PMID:31362482   PMID:31389569   PMID:31389580   PMID:31389582  
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Mir21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81071,902,600 - 71,902,691 (-)NCBIGRCr8
mRatBN7.21071,405,257 - 71,405,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,405,257 - 71,405,348 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,026,707 - 76,026,798 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01075,531,582 - 75,531,673 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01070,996,132 - 70,996,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01073,902,210 - 73,902,301 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1073,902,210 - 73,902,301 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01076,197,081 - 76,197,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1070,326,375 - 70,326,466 (-)NCBICelera
Cytogenetic Map10q26NCBI
MIR21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,841,266 - 59,841,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,841,266 - 59,841,337 (+)EnsemblGRCh38hg38GRCh38
GRCh371757,918,627 - 57,918,698 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361755,273,408 - 55,273,479 (+)NCBINCBI36Build 36hg18NCBI36
Celera1754,382,140 - 54,382,211 (+)NCBICelera
Cytogenetic Map17q23.1NCBI
HuRef1753,291,116 - 53,291,187 (+)NCBIHuRef
CHM1_11757,982,648 - 57,982,719 (+)NCBICHM1_1
T2T-CHM13v2.01760,710,020 - 60,710,091 (+)NCBIT2T-CHM13v2.0
Mir21a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391186,474,893 - 86,474,984 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1186,474,893 - 86,474,984 (-)EnsemblGRCm39 Ensembl
GRCm381186,584,067 - 86,584,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1186,584,067 - 86,584,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,397,569 - 86,397,660 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1196,199,974 - 96,200,065 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.82NCBI
MIR21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1934,340,550 - 34,340,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl934,340,533 - 34,340,624 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha933,572,293 - 33,572,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0935,150,885 - 35,150,944 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl935,150,868 - 35,150,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,934,637 - 33,934,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0934,220,122 - 34,220,181 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0934,306,261 - 34,306,320 (+)NCBIUU_Cfam_GSD_1.0
MIR21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,065,267 - 36,065,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,065,267 - 36,065,358 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21237,340,385 - 37,340,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3

.

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Pdcd4rno-miR-21-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI19158092
Pdcd4rno-miR-21-5pMirtarbaseexternal_infoWestern blot//qRT-PCR//GFP reporter assay//LuciferFunctional MTI19336275
Pdcd4rno-miR-21-5pMirtarbaseexternal_infoWestern blotFunctional MTI19167416
Pdcd4rno-miR-21-5pMirtarbaseexternal_infoqRT-PCR//Western blotFunctional MTI21154462
Pdcd4rno-miR-21-5pMirtarbaseexternal_infoImmunocytochemistry//Immunofluorescence//LuciferasFunctional MTI22565856
Tpm1rno-miR-21-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Ptenrno-miR-21-5pMirtarbaseexternal_infoMicroarray//qRT-PCR//Western blotFunctional MTI17478730
Faslgrno-miR-21-5pMirtarbaseexternal_infoImmunofluorescence//In situ hybridization//LuciferFunctional MTI20840605
Elavl4rno-miR-21-5pMirtarbaseexternal_infoqRT-PCRFunctional MTI (Weak)20584986

Predicted Targets
Summary Value
Count of predictions:6874
Count of gene targets:4588
Count of transcripts:4943
Interacting mature miRNAs:rno-miR-21-3p, rno-miR-21-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 91 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631565Hcuc4Hepatic copper content QTL 44.15liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)106694181373452992Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
12903245Cm110Cardiac mass QTL 1100.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)107111521772606468Rat
12903246Cm111Cardiac mass QTL 1110.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)107111521772606468Rat

1 to 10 of 91 rows
AI787464  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21071,406,200 - 71,406,306 (+)MAPPERmRatBN7.2
mRatBN7.21195,875,222 - 195,875,328 (+)MAPPERmRatBN7.2
Rnor_6.01213,546,690 - 213,546,795NCBIRnor6.0
Rnor_6.01073,903,154 - 73,903,259NCBIRnor6.0
Rnor_5.01076,196,123 - 76,196,228UniSTSRnor5.0
Rnor_5.01220,441,627 - 220,441,732UniSTSRnor5.0
RGSC_v3.41200,953,414 - 200,953,519UniSTSRGSC3.4
RGSC_v3.41074,865,444 - 74,865,549UniSTSRGSC3.4
Celera1070,327,319 - 70,327,424UniSTS
Celera1193,519,273 - 193,519,378UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map10q26UniSTS
RH133657  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22182,788,905 - 182,789,088 (+)MAPPERmRatBN7.2
mRatBN7.21071,405,085 - 71,405,261 (+)MAPPERmRatBN7.2
mRatBN7.21071,405,078 - 71,405,261 (+)MAPPERmRatBN7.2
mRatBN7.22182,788,912 - 182,789,088 (+)MAPPERmRatBN7.2
Rnor_6.02196,386,053 - 196,386,235NCBIRnor6.0
Rnor_6.01073,902,032 - 73,902,214NCBIRnor6.0
Rnor_5.01076,197,168 - 76,197,350UniSTSRnor5.0
Rnor_5.02215,882,523 - 215,882,705UniSTSRnor5.0
RGSC_v3.42190,121,004 - 190,121,186UniSTSRGSC3.4
RGSC_v3.41074,864,322 - 74,864,504UniSTSRGSC3.4
Celera1070,326,197 - 70,326,379UniSTS
Celera2175,322,649 - 175,322,831UniSTS
AA859070  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21195,875,497 - 195,875,652 (+)MAPPERmRatBN7.2
mRatBN7.21071,405,948 - 71,406,103 (+)MAPPERmRatBN7.2
Rnor_6.01073,902,902 - 73,903,056NCBIRnor6.0
Rnor_6.01213,546,965 - 213,547,119NCBIRnor6.0
Rnor_5.01076,196,326 - 76,196,480UniSTSRnor5.0
Rnor_5.01220,441,902 - 220,442,056UniSTSRnor5.0
RGSC_v3.41200,953,689 - 200,953,843UniSTSRGSC3.4
RGSC_v3.41074,865,192 - 74,865,346UniSTSRGSC3.4
Celera1070,327,067 - 70,327,221UniSTS
Celera1193,519,550 - 193,519,704UniSTS
Cytogenetic Map10q26UniSTS
RH137097  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21071,405,555 - 71,405,714 (+)MAPPERmRatBN7.2
Rnor_6.01073,902,509 - 73,902,667NCBIRnor6.0
Rnor_5.01076,196,715 - 76,196,873UniSTSRnor5.0
RGSC_v3.41074,864,799 - 74,864,957UniSTSRGSC3.4
Celera1070,326,674 - 70,326,832UniSTS
Cytogenetic Map10q26UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 9 40 93 60 59 29 24 29 6 156 84 73 27 44 30


RefSeq Transcripts NR_031823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1071,405,257 - 71,405,348 (-)Ensembl
Rnor_6.0 Ensembl1073,902,210 - 73,902,301 (-)Ensembl
RefSeq Acc Id: NR_031823
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81071,902,600 - 71,902,691 (-)NCBI
mRatBN7.21071,405,257 - 71,405,348 (-)NCBI
Rnor_6.01073,902,210 - 73,902,301 (-)NCBI
Rnor_5.01076,197,081 - 76,197,172 (+)NCBI
Celera1070,326,375 - 70,326,466 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23796 BioCyc
Ensembl Genes ENSRNOG00000035480 Ensembl
miRBase MI0000850 ENTREZGENE
NCBI Gene 100314000 ENTREZGENE
PhenoGen Mir21 PhenoGen
RatGTEx ENSRNOG00000035480 RatGTEx
RNAcentral URS0000013967 RNACentral
  URS000015930E RNACentral
  URS000039ED8D RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir21  microRNA 21  Mir21  microRNA mir-21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir21  microRNA mir-21      Symbol and Name status set to provisional 70820 PROVISIONAL