Scl47 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl47 (Serum cholesterol level QTL 47) Rattus norvegicus

Symbol: Scl47
Name: Serum cholesterol level QTL 47
RGD ID: 1549846
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 3.6
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81051,071,897 - 96,071,897RGD_MAPPER_PIPELINE
mRatBN7.21050,574,707 - 95,574,707RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01053,104,718 - 98,104,718RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01052,002,683 - 97,002,683RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41054,091,148 - 99,091,148RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.11054,105,518 - 99,105,518RGD
Cross Type: Not Available
Strains Crossed: ExHC/Seac BN/Seac 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47RatHypercholesterolemia  IAGP 1547851 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47Ratincreased circulating cholesterol level  IAGP 1547851 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47Ratserum total cholesterol level  IDA 1547851 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47Ratcontrol condition  IDA 1547851 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47Ratserum total cholesterol measurement test  IDA 1547851 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47RatBN/Seac  IEA 1547851 RGD 
Scl47RatExHC/Seac  IEA 1547851 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scl47Ratblood cholesterol amount  IDA 1547851 RGD 


#
Reference Title
Reference Citation
1. Genetic analysis of diet-induced hypercholesterolemia in exogenously hypercholesterolemic (ExHC) rats. Asahina M, et al., J Lipid Res 46(10):2289-2294, 2005.


1 to 20 of 1289 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
621799Dnah9dynein, axonemal, heavy chain 9105049617450864909Rat
40931177LOC120095122uncharacterized LOC120095122105086476351013804Rat
1564618Shisa6shisa family member 6105089774051192111Rat
7554930LOC102554448glyceraldehyde-3-phosphate dehydrogenase-like105123287851233686Rat
1587327Rps2-ps29ribosomal protein S2, pseudogene 29105126154451262251Rat
1561050Eno1-ps14enolase 1, pseudogene 14105129963251300633Rat
6499408Rpl15-ps7ribosomal protein L15, pseudogene 7105144754451448165Rat
1563963Pgam1-ps11phosphoglycerate mutase 1, pseudogene 11105144914151480570Rat
41236741LOC120095342histidine triad nucleotide-binding protein 1-like105158249551582818Rat
41127486LOC120095442small nucleolar RNA SNORA48105159446451594601Rat
7616564LOC102554726uncharacterized LOC102554726105160857151614414Rat
1565284Pirtphosphoinositide-interacting regulator of transient receptor potential channels105161320251628108Rat
40983152LOC120095123uncharacterized LOC120095123105162571051701636Rat
7617190Tmem238ltransmembrane protein 238 like105164787151662206Rat
1309576Tmem220transmembrane protein 220105171977751728792Rat
1309906AdprmADP-ribose/CDP-alcohol diphosphatase, manganese-dependent105173207351744635Rat
1559538Sco1synthesis of cytochrome C oxidase 1105174465651757246Rat
3138Myh3myosin heavy chain 3105177017751793994Rat
9197903LOC103693350uncharacterized LOC103693350105180120951831435Rat
620354Myh2myosin heavy chain 2105185673851883236Rat

1 to 20 of 1289 rows
1 to 20 of 1799 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10062D10Wox19230108541268585412915Ratregion
10141D10Wox15254106322103763221291Ratregion
10142D10Arb9129106322109463221223Ratregion
10195D10Wox14158105477580754775965Ratregion
10196D10Mgh22270105477574554776015Ratregion
10662D10Wox23258108097644580976703Ratregion
10664D10Uwm1158105467188954672047Ratregion
10926D10Wox21130108913584589135975Ratregion
10949D10Wox11150105178628251786432Ratregion
10980D10Wox16125108051612580516250Ratregion
10981D10Arb21199108051614780516346Ratregion
10982D10Mit13165108051613480516299Ratregion
10995D10Wox24138106381361463813752Ratregion
11137D10Wox17153108705512187055282Ratregion
11169D10Mgh21140108853913988539279Ratregion
33846D10Mit2188106364253963642727Ratregion
34176D10Mgh24122105259574452595866Ratregion
34274D10Mgh5223108256485682565079Ratregion
34320D10Mgh7215105409867454098889Ratregion
34445D10Mgh6137106134527661345413Ratregion
1 to 20 of 1799 rows

Peak: (D10Rat25)
Rat AssemblyChrPosition (strand)Source
GRCr81073,571,838 - 73,571,957 (+)Marker Load Pipeline
mRatBN7.21073,074,648 - 73,074,767 (+)MAPPER
Rnor_6.01075,604,659 - 75,604,777NCBI
Rnor_5.01074,502,624 - 74,502,742UniSTS
RGSC_v3.41076,591,089 - 76,591,208RGD
RGSC_v3.41076,591,090 - 76,591,208UniSTS
RGSC_v3.11076,605,459 - 76,605,578RGD
Celera1071,983,654 - 71,983,772UniSTS
RH 2.0 Map10752.5RGD
SHRSP x BN Map1050.9999RGD
FHH x ACI Map1059.2399RGD


1 to 10 of 183 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631565Hcuc4Hepatic copper content QTL 44.15liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)106694181373452992Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat

1 to 10 of 183 rows


Note Type Note Reference
qtl_statistics_details analyses were carried out using the interval-mapping method with Map Manager QTX 1547851