Or1e23 (olfactory receptor family 1 subfamily E member 23) - Rat Genome Database

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Gene: Or1e23 (olfactory receptor family 1 subfamily E member 23) Rattus norvegicus
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Symbol: Or1e23
Name: olfactory receptor family 1 subfamily E member 23
RGD ID: 1333644
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to be active in plasma membrane. Orthologous to human OR1E1 (olfactory receptor family 1 subfamily E member 1); OR1E2 (olfactory receptor family 1 subfamily E member 2); and OR1E3 (olfactory receptor family 1 subfamily E member 3 (gene/pseudogene)).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1485; olfactory receptor gene Olr1485; olfactory receptor Olr1485; Olr1485
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,803,814 - 58,814,300 (-)NCBIGRCr8
mRatBN7.21058,305,321 - 58,315,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1058,314,520 - 58,318,662 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,943,969 - 62,944,907 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,432,437 - 62,433,375 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,931,624 - 57,932,562 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01060,266,797 - 60,275,768 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01060,003,939 - 60,012,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,675,614 - 60,676,552 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11060,689,236 - 60,690,175 (-)NCBI
Celera1057,383,003 - 57,383,941 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1e23Ratdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or1e23Ratdetection of chemical stimulus involved in sensory perception of smell  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or1e23RatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or1e23RatG protein-coupled receptor signaling pathway  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or1e23RatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or1e23Ratsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or1e23Ratsignal transduction involved_inIBAPANTHER:PTN001239850 and UniProtKB:P349821600115GO_REF:0000033GO_CentralGO_REF:0000033
Or1e23Ratsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1e23Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or1e23Ratmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Or1e23Ratplasma membrane is_active_inIBAPANTHER:PTN001239850 and UniProtKB:A6NND41600115GO_REF:0000033GO_CentralGO_REF:0000033
Or1e23Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Or1e23Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1e23RatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or1e23RatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or1e23Ratolfactory receptor activity enablesIBAMGI:1333746 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Or1e23Ratolfactory receptor activity  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or1e23Ratolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1e23Rattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:21873635  



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Variants in Or1e23
111 total Variants

Predicted Target Of
Summary Value
Count of predictions:315
Count of miRNA genes:162
Interacting mature miRNAs:182
Transcripts:ENSRNOT00000026857, ENSRNOT00000052183, ENSRNOT00000065541, ENSRNOT00000072913
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 79 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104698969968663659Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat

1 to 10 of 79 rows





RefSeq Transcripts NM_001000028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000114779   ⟹   ENSRNOP00000086522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1058,314,520 - 58,318,662 (-)Ensembl
RefSeq Acc Id: NM_001000028   ⟹   NP_001000028
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81058,813,362 - 58,814,300 (-)NCBI
mRatBN7.21058,314,869 - 58,315,807 (-)NCBI
Rnor_6.01060,274,830 - 60,275,768 (-)NCBI
Rnor_5.01060,003,939 - 60,012,910 (-)NCBI
RGSC_v3.41060,675,614 - 60,676,552 (-)RGD
Celera1057,383,003 - 57,383,941 (-)RGD
Sequence:
RefSeq Acc Id: XM_017597113   ⟹   XP_017452602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81058,803,814 - 58,814,300 (-)NCBI
mRatBN7.21058,305,321 - 58,315,807 (-)NCBI
Rnor_6.01060,266,797 - 60,275,768 (-)NCBI
Sequence:
Protein RefSeqs NP_001000028 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452602 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086522.1
  ENSRNOP00000101591
RefSeq Acc Id: NP_001000028   ⟸   NM_001000028
- UniProtKB: A0A8I6A2D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452602   ⟸   XM_017597113
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000086522   ⟸   ENSRNOT00000114779
G-protein coupled receptors family 1 profile


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-24307 BioCyc
Ensembl Genes ENSRNOG00000066160 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000076494 ENTREZGENE
Ensembl Transcript ENSRNOT00000114779.1 UniProtKB/TrEMBL
  ENSRNOT00000145280 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:287489 UniProtKB/TrEMBL
NCBI Gene 287489 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or1e23 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000066160 RatGTEx
  ENSRNOG00000076494 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A2D8 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or1e23  olfactory receptor family 1 subfamily E member 23  Olr1485  olfactory receptor 1485  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1485  olfactory receptor 1485   Olr1485_predicted  olfactory receptor 1485 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1485_predicted  olfactory receptor 1485 (predicted)      Symbol and Name status set to approved 70820 APPROVED