Lgals9 (galectin 9) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Lgals9 (galectin 9) Rattus norvegicus
Analyze
Symbol: Lgals9
Name: galectin 9
RGD ID: 3005
Description: Predicted to enable several functions, including disaccharide binding activity; galactoside binding activity; and protein serine/threonine kinase activator activity. Involved in toll-like receptor 3 signaling pathway. Predicted to be located in cytoplasm and extracellular space. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including LGALS9 (galectin 9); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 36 kDa beta-galactoside-binding lectin; gal-9; galectin-9; Lectin galactose binding soluble 9 (Galectin-9); lectin, galactose binding, soluble 9; Lectin, galactose binding, soluble 9 (Galectin-9); lectin, galactoside-binding, soluble, 9; UAT; urate transporter/channel
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81064,405,044 - 64,428,249 (-)NCBIGRCr8
mRatBN7.21063,907,018 - 63,930,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,907,018 - 63,930,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,537,217 - 68,560,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01068,042,557 - 68,065,583 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,511,790 - 63,534,653 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,737,022 - 64,760,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,737,022 - 64,760,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,863,438 - 66,886,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41065,129,006 - 65,152,052 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11065,142,629 - 65,165,675 (-)NCBI
Celera1062,879,287 - 62,902,249 (-)NCBICelera
Cytogenetic Map10q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-azaorotic acid  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buspirone  (EXP)
butyric acid  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dioxygen  (EXP)
ethanol  (EXP)
fenthion  (ISO)
fluoranthene  (ISO)
flurbiprofen  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fructose  (EXP)
gefitinib  (ISO)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
hydroquinone  (ISO)
inulin  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
naphthalene  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nitrofen  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
potassium cyanide  (ISO)
quercetin  (EXP)
rutin  (EXP)
SCH 23390  (EXP)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sotorasib  (ISO)
succimer  (ISO)
tamibarotene  (ISO)
tauroursodeoxycholic acid  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
trametinib  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
vancomycin  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to type II interferon  (ISO)
cellular response to virus  (ISO)
ERK1 and ERK2 cascade  (ISO)
female pregnancy  (ISO)
inflammatory response  (ISO)
maintenance of protein location  (ISO)
maternal process involved in female pregnancy  (ISO)
mature conventional dendritic cell differentiation  (ISO)
monoatomic ion transport  (IEA)
natural killer cell tolerance induction  (ISO)
negative regulation of activated T cell proliferation  (ISO)
negative regulation of CD4-positive, alpha-beta T cell proliferation  (IBA,ISO)
negative regulation of chemokine production  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of inflammatory response  (ISO)
negative regulation of mast cell degranulation  (ISO)
negative regulation of natural killer cell activation  (ISO)
negative regulation of natural killer cell degranulation  (ISO)
negative regulation of natural killer cell mediated cytotoxicity  (ISO)
negative regulation of tumor necrosis factor production  (ISO)
negative regulation of type II interferon production  (IBA,ISO)
p38MAPK cascade  (ISO)
positive regulation of activated T cell autonomous cell death  (ISO)
positive regulation of canonical NF-kappaB signal transduction  (ISO)
positive regulation of CD4-positive, alpha-beta T cell proliferation  (ISO)
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response  (ISO)
positive regulation of chemokine production  (ISO)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway  (ISO)
positive regulation of cytokine production  (ISO)
positive regulation of defense response to bacterium  (ISO)
positive regulation of dendritic cell apoptotic process  (ISO)
positive regulation of dendritic cell chemotaxis  (ISO)
positive regulation of dendritic cell differentiation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of gene expression  (IBA,ISO)
positive regulation of innate immune response  (ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-1 production  (ISO)
positive regulation of interleukin-10 production  (ISO)
positive regulation of interleukin-12 production  (ISO)
positive regulation of interleukin-13 production  (ISO)
positive regulation of interleukin-4 production  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of interleukin-8 production  (ISO)
positive regulation of macrophage activation  (ISO)
positive regulation of monocyte chemotactic protein-1 production  (ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (ISO)
positive regulation of oxidoreductase activity  (ISO)
positive regulation of regulatory T cell differentiation  (ISO)
positive regulation of SMAD protein signal transduction  (ISO)
positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell  (ISO)
positive regulation of T cell migration  (ISO)
positive regulation of transforming growth factor beta production  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
positive regulation of type II interferon production  (ISO)
positive regulation of viral entry into host cell  (ISO)
receptor clustering  (ISO)
regulation of interleukin-4 production  (ISO)
regulation of interleukin-5 production  (ISO)
regulation of natural killer cell differentiation  (ISO)
regulation of p38MAPK cascade  (ISO)
regulation of T cell chemotaxis  (ISO)
regulation of T cell differentiation in thymus  (ISO)
regulation of T-helper 17 type immune response  (ISO)
response to interleukin-1  (ISO)
response to lipopolysaccharide  (ISO)
toll-like receptor 2 signaling pathway  (ISO)
toll-like receptor 3 signaling pathway  (IMP)
toll-like receptor 4 signaling pathway  (ISO)
transforming growth factor beta receptor signaling pathway  (ISO)

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
extracellular space  (ISO)
nucleus  (IBA,ISO)
plasma membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Gene and protein expression of galectin-3 and galectin-9 in experimental pneumococcal meningitis. Bellac CL, etal., Neurobiol Dis. 2007 Nov;28(2):175-83. Epub 2007 Jul 10.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Molecular cloning and functional reconstitution of a urate transporter/channel. Leal-Pinto E, etal., J Biol Chem 1997 Jan 3;272(1):617-25.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Astrocyte galectin-9 potentiates microglial TNF secretion. Steelman AJ and Li J, J Neuroinflammation. 2014 Aug 27;11:144. doi: 10.1186/s12974-014-0144-0.
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9038233   PMID:12761501   PMID:16116184   PMID:16740401   PMID:18977853   PMID:19776007   PMID:20209097   PMID:20937702   PMID:21670307   PMID:22855528   PMID:23242525   PMID:23376485  
PMID:23408620   PMID:23817958   PMID:23836896   PMID:24465902   PMID:24508263   PMID:25065622   PMID:25218666   PMID:25264706   PMID:25578313   PMID:25754930   PMID:32865657   PMID:38527407  


Genomics

Comparative Map Data
Lgals9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81064,405,044 - 64,428,249 (-)NCBIGRCr8
mRatBN7.21063,907,018 - 63,930,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,907,018 - 63,930,045 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,537,217 - 68,560,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01068,042,557 - 68,065,583 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,511,790 - 63,534,653 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01064,737,022 - 64,760,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,737,022 - 64,760,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,863,438 - 66,886,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41065,129,006 - 65,152,052 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11065,142,629 - 65,165,675 (-)NCBI
Celera1062,879,287 - 62,902,249 (-)NCBICelera
Cytogenetic Map10q25NCBI
LGALS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381727,631,188 - 27,649,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1727,629,798 - 27,649,560 (+)EnsemblGRCh38hg38GRCh38
GRCh371725,958,214 - 25,976,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361722,982,301 - 23,000,713 (+)NCBINCBI36Build 36hg18NCBI36
Build 341722,982,362 - 23,000,707NCBI
Celera1722,819,983 - 22,838,398 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,165,323 - 22,183,730 (+)NCBIHuRef
CHM1_11726,020,900 - 26,039,300 (+)NCBICHM1_1
T2T-CHM13v2.01728,572,662 - 28,591,030 (+)NCBIT2T-CHM13v2.0
Lgals9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,853,805 - 78,875,750 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,853,800 - 78,875,772 (-)EnsemblGRCm39 Ensembl
GRCm381178,962,979 - 78,984,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,962,974 - 78,984,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,776,481 - 78,798,426 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,779,590 - 78,801,026 (-)NCBIMGSCv36mm8
Celera1188,596,004 - 88,617,949 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Lgals9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554815,234,125 - 5,249,564 (-)NCBIChiLan1.0ChiLan1.0
LOC100977210
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,806,560 - 36,824,924 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11738,690,067 - 38,708,285 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01729,125,460 - 29,145,028 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11729,623,398 - 29,642,959 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1729,623,398 - 29,642,959 (-)Ensemblpanpan1.1panPan2
LGALS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,154,613 - 42,170,423 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,154,702 - 42,170,391 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,311,855 - 41,327,548 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0942,972,410 - 42,988,232 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl942,972,477 - 42,988,200 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1941,753,711 - 41,769,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,048,540 - 42,064,220 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,125,818 - 42,141,545 (+)NCBIUU_Cfam_GSD_1.0
Lgals9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,156,490 - 41,172,295 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365384,034,467 - 4,050,240 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LGALS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11244,155,079 - 44,173,634 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,002,236 - 46,021,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242599
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11621,421,034 - 21,439,583 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660758,702,594 - 8,721,093 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lgals9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624786478,048 - 491,086 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lgals9
459 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:384
Count of miRNA genes:129
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000017042, ENSRNOT00000017071
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106124830367785171Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106134541366743655Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
RH130652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21063,907,149 - 63,907,345 (-)MAPPERmRatBN7.2
mRatBN7.21063,854,063 - 63,854,260 (-)MAPPERmRatBN7.2
mRatBN7.22120,683,421 - 120,683,618 (-)MAPPERmRatBN7.2
Rnor_6.01064,759,874 - 64,760,069NCBIRnor6.0
Rnor_5.01066,863,564 - 66,863,759UniSTSRnor5.0
RGSC_v3.41065,129,132 - 65,129,327UniSTSRGSC3.4
Celera1062,879,413 - 62,879,608UniSTS
Cytogenetic Map10q25UniSTS
D11Bhm84  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21063,911,839 - 63,912,024 (-)MAPPERmRatBN7.2
Rnor_6.01064,755,195 - 64,755,379NCBIRnor6.0
Rnor_5.01066,868,254 - 66,868,438UniSTSRnor5.0
RGSC_v3.41065,133,821 - 65,134,005UniSTSRGSC3.4
Celera1062,884,102 - 62,884,286UniSTS
Cytogenetic Map10q25UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 57 164 109 66 109 55 32 45 53
Low 84 63 38 3 38 26 45 195 83 100 24
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000017042   ⟹   ENSRNOP00000017042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,024 - 63,930,045 (-)Ensembl
Rnor_6.0 Ensembl1064,737,088 - 64,759,787 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000017071   ⟹   ENSRNOP00000017071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,018 - 63,930,045 (-)Ensembl
Rnor_6.0 Ensembl1064,737,022 - 64,760,201 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093232   ⟹   ENSRNOP00000076199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,024 - 63,930,045 (-)Ensembl
Rnor_6.0 Ensembl1064,737,052 - 64,757,515 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093244   ⟹   ENSRNOP00000076231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,018 - 63,930,045 (-)Ensembl
Rnor_6.0 Ensembl1064,737,090 - 64,757,525 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093276   ⟹   ENSRNOP00000076200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1064,751,649 - 64,752,124 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093529   ⟹   ENSRNOP00000076090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,024 - 63,930,045 (-)Ensembl
Rnor_6.0 Ensembl1064,737,110 - 64,757,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1064,755,742 - 64,757,568 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107069   ⟹   ENSRNOP00000079075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1063,907,018 - 63,910,420 (-)Ensembl
RefSeq Acc Id: NM_001388499   ⟹   NP_001375428
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,050 - 64,428,070 (-)NCBI
mRatBN7.21063,907,024 - 63,930,045 (-)NCBI
RefSeq Acc Id: NM_001388500   ⟹   NP_001375429
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,050 - 64,428,070 (-)NCBI
mRatBN7.21063,907,024 - 63,930,045 (-)NCBI
RefSeq Acc Id: NM_012977   ⟹   NP_037109
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,044 - 64,428,070 (-)NCBI
mRatBN7.21063,907,018 - 63,930,045 (-)NCBI
Rnor_6.01064,737,022 - 64,760,195 (+)NCBI
Rnor_5.01066,863,438 - 66,886,611 (-)NCBI
RGSC_v3.41065,129,006 - 65,152,052 (-)RGD
Celera1062,879,287 - 62,902,249 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085280   ⟹   XP_038941208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,048 - 64,428,249 (-)NCBI
mRatBN7.21063,907,020 - 63,930,224 (-)NCBI
RefSeq Acc Id: XM_039085281   ⟹   XP_038941209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,048 - 64,428,249 (-)NCBI
mRatBN7.21063,907,020 - 63,930,224 (-)NCBI
RefSeq Acc Id: XM_039085282   ⟹   XP_038941210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81064,405,048 - 64,428,249 (-)NCBI
mRatBN7.21063,907,020 - 63,930,224 (-)NCBI
RefSeq Acc Id: NP_037109   ⟸   NM_012977
- Peptide Label: isoform 2
- UniProtKB: Q6P7Q6 (UniProtKB/TrEMBL),   A6HH78 (UniProtKB/TrEMBL),   A0A1W2Q608 (UniProtKB/TrEMBL),   F7ETI8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017071   ⟸   ENSRNOT00000017071
Ensembl Acc Id: ENSRNOP00000017042   ⟸   ENSRNOT00000017042
Ensembl Acc Id: ENSRNOP00000076090   ⟸   ENSRNOT00000093529
Ensembl Acc Id: ENSRNOP00000076200   ⟸   ENSRNOT00000093276
Ensembl Acc Id: ENSRNOP00000076231   ⟸   ENSRNOT00000093244
Ensembl Acc Id: ENSRNOP00000076199   ⟸   ENSRNOT00000093232
RefSeq Acc Id: XP_038941210   ⟸   XM_039085282
- Peptide Label: isoform X3
- UniProtKB: A0A1W2Q6B5 (UniProtKB/TrEMBL),   A0A1W2Q608 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941209   ⟸   XM_039085281
- Peptide Label: isoform X2
- UniProtKB: Q6P7Q6 (UniProtKB/TrEMBL),   A6HH78 (UniProtKB/TrEMBL),   A0A1W2Q608 (UniProtKB/TrEMBL),   F7ETI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941208   ⟸   XM_039085280
- Peptide Label: isoform X1
- UniProtKB: P97840 (UniProtKB/Swiss-Prot),   O35866 (UniProtKB/Swiss-Prot),   O08588 (UniProtKB/Swiss-Prot),   G3V7N8 (UniProtKB/TrEMBL),   A6HH79 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001375429   ⟸   NM_001388500
- Peptide Label: isoform 3
- UniProtKB: A0A1W2Q6B5 (UniProtKB/TrEMBL),   A0A1W2Q608 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001375428   ⟸   NM_001388499
- Peptide Label: isoform 1
- UniProtKB: P97840 (UniProtKB/Swiss-Prot),   O35866 (UniProtKB/Swiss-Prot),   O08588 (UniProtKB/Swiss-Prot),   G3V7N8 (UniProtKB/TrEMBL),   A6HH79 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079075   ⟸   ENSRNOT00000107069
Protein Domains
Galectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97840-F1-model_v2 AlphaFold P97840 1-354 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697457
Promoter ID:EPDNEW_R7981
Type:initiation region
Name:Lgals9_1
Description:galectin 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01064,737,044 - 64,737,104EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3005 AgrOrtholog
BioCyc Gene G2FUF-24031 BioCyc
Ensembl Genes ENSRNOG00000012681 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017042.9 UniProtKB/TrEMBL
  ENSRNOT00000017071.8 UniProtKB/TrEMBL
  ENSRNOT00000093232.2 UniProtKB/TrEMBL
  ENSRNOT00000093244.2 UniProtKB/TrEMBL
  ENSRNOT00000093529.2 UniProtKB/TrEMBL
  ENSRNOT00000107069.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921383 IMAGE-MGC_LOAD
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25476 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72913 IMAGE-MGC_LOAD
NCBI Gene 25476 ENTREZGENE
PANTHER GALECTIN-9C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11346 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lgals9 PhenoGen
PROSITE GALECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012681 RatGTEx
SMART Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC229670
UniProt A0A1W2Q608 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q6B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q6D2_RAT UniProtKB/TrEMBL
  A0A8I6G4S4_RAT UniProtKB/TrEMBL
  A6HH78 ENTREZGENE, UniProtKB/TrEMBL
  A6HH79 ENTREZGENE, UniProtKB/TrEMBL
  F7ETI8 ENTREZGENE, UniProtKB/TrEMBL
  G3V7N8 ENTREZGENE, UniProtKB/TrEMBL
  LEG9_RAT UniProtKB/Swiss-Prot
  O08588 ENTREZGENE
  O35866 ENTREZGENE
  P97840 ENTREZGENE
  Q6P7Q6 ENTREZGENE
UniProt Secondary O08588 UniProtKB/Swiss-Prot
  O35866 UniProtKB/Swiss-Prot
  Q6P7Q6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-18 Lgals9  galectin 9  Lgals9  lectin, galactoside-binding, soluble, 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Lgals9  lectin, galactoside-binding, soluble, 9  Lgals9  lectin, galactose binding, soluble 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Lgals9  Lectin, galactose binding, soluble 9 (Galectin-9)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to the cell membrane 729068
gene_process involved in urate flux across cell membranes 729068