Psmb6 (proteasome subunit beta 6)

Gene: Psmb6 (proteasome subunit beta 6) Rattus norvegicus

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Symbol:

Psmb6

Name:

proteasome subunit beta 6

Description:

Predicted to have endopeptidase activity. Predicted to be involved in proteasomal ubiquitin-independent protein catabolic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to localize to the cytosol; nucleoplasm; and proteasome core complex, beta-subunit complex. Orthologous to human PSMB6 (proteasome subunit beta 6); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 1,3-dinitrobenzene; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

macropain delta chain; multicatalytic endopeptidase complex delta chain; proteasome (prosome, macropain) subunit, beta type 6; proteasome beta 6 subunit; proteasome chain 5; proteasome delta chain; proteasome subunit beta type 6-like; proteasome subunit beta type-6; proteasome subunit Y; Psmb6l

Orthologs:

Homo sapiens (human) : PSMB6 (proteasome subunit beta 6) HGNC Alliance
Mus musculus (house mouse) : Psmb6 (proteasome (prosome, macropain) subunit, beta type 6) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Psmb6 (proteasome subunit beta 6)
Pan paniscus (bonobo/pygmy chimpanzee) : PSMB6 (proteasome subunit beta 6)
Canis lupus familiaris (dog) : PSMB6 (proteasome subunit beta 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Psmb6 (proteasome subunit beta 6)
Sus scrofa (pig) : PSMB6 (proteasome subunit beta 6)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSMB6 (proteasome subunit beta 6)	RGD	RGD
Mus musculus (house mouse):	Psmb6 (proteasome (prosome, macropain) subunit, beta type 6)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Psmb6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psmb6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Psmb6 (proteasome (prosome, macropain) subunit, beta type 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Homo sapiens (human):	PSMB6 (proteasome subunit beta 6)	Alliance	DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	psmb6 (proteasome subunit beta 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, OMA, OrthoFinder, PANTHER, PhylomeDB, TreeFam)
Saccharomyces cerevisiae (baker's yeast):	PRE3	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Drosophila melanogaster (fruit fly):	Prosbeta1	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Caenorhabditis elegans (roundworm):	pbs-1	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	57,131,339 - 57,133,685 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	56,888,972 - 56,891,279 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	57,370,397 - 57,372,704 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	57,384,019 - 57,386,327 (+)	NCBI
Celera	10	54,385,536 - 54,387,843 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

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Model

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Molecular Pathway Annotations

References - curated

References - uncurated

RGD Disease Portals

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Damaging Variants

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on Psmb6
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	61881
Created:	2001-04-11
Species:	Rattus norvegicus
Last Modified:	2019-04-23
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable
Gene Enrichment

Imported Annotations - KEGG (archival)