Psmb6 (proteasome subunit beta 6)

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Gene: Psmb6 (proteasome subunit beta 6) Rattus norvegicus

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Symbol:

Psmb6

Name:

proteasome subunit beta 6

Description:

ENCODES a protein that exhibits threonine-type endopeptidase activity (inferred); PARTICIPATES IN ubiquitin/proteasome degradation pathway; FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome complex (ortholog); INTERACTS WITH 1,2,4-trimethylbenzene; 1,3-dinitrobenzene; ammonium chloride

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

macropain delta chain; multicatalytic endopeptidase complex delta chain; proteasome (prosome, macropain) subunit, beta type 6; proteasome beta 6 subunit; proteasome chain 5; proteasome delta chain; proteasome subunit beta type 6-like; proteasome subunit beta type-6; proteasome subunit Y; Psmb6l

Orthologs:

Homo sapiens (human) : PSMB6 (proteasome subunit beta 6) HGNC Alliance
Mus musculus (house mouse) : Psmb6 (proteasome (prosome, macropain) subunit, beta type 6) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Psmb6 (proteasome subunit beta 6)
Pan paniscus (bonobo/pygmy chimpanzee) : PSMB6 (proteasome subunit beta 6)
Canis lupus familiaris (dog) : PSMB6 (proteasome subunit beta 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Psmb6 (proteasome subunit beta 6)
Sus scrofa (pig) : PSMB6 (proteasome subunit beta 6)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSMB6 (proteasome subunit beta 6)	RGD	RGD
Mus musculus (house mouse):	Psmb6 (proteasome (prosome, macropain) subunit, beta type 6)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Psmb6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Psmb6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSMB6 (proteasome subunit beta 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Psmb6 (proteasome (prosome, macropain) subunit, beta type 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Homo sapiens (human):	PSMB6 (proteasome subunit beta 6)	Alliance	DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	psmb6 (proteasome subunit beta 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, OMA, OrthoFinder, PANTHER, PhylomeDB, TreeFam)
Saccharomyces cerevisiae (baker's yeast):	PRE3 (null)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Drosophila melanogaster (fruit fly):	Prosbeta1 (null)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Caenorhabditis elegans (roundworm):	pbs-1 (null)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	57,131,339 - 57,133,685 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	56,888,972 - 56,891,279 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	57,370,397 - 57,372,704 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	57,384,019 - 57,386,327 (+)	NCBI
Celera	10	54,385,536 - 54,387,843 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

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References - curated

References - uncurated

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Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

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Strain Variation

Strain Sequence Variants (Rnor 5.0)

Damaging Variants

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on Psmb6
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	61881
Created:	2001-04-11
Species:	Rattus norvegicus
Last Modified:	2019-01-30
Status:	ACTIVE

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Imported Annotations - KEGG (archival)