Mcs15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mcs15 (Mammary carcinoma susceptibility QTL 15) Rattus norvegicus

Symbol: Mcs15
Name: Mammary carcinoma susceptibility QTL 15
RGD ID: 1600367
Previously known as: Mcs7
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 4.5
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81072,724,423 - 107,713,808RGD_MAPPER_PIPELINE
mRatBN7.21085,565,469 - 103,884,409RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01088,544,136 - 107,545,372RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01088,338,460 - 107,179,398RGDRnor5.0
RGSC_v3.41089,575,059 - 108,822,775RGDRGSC3.4
RGSC_v3.11089,589,430 - 108,837,146RGD
Cross Type: Not Available
Strains Crossed: WF.WKY-(D10Got124-D10Rat187)/Uwm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Brca1 is a candidate Gene for Mcs15

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. The Mcs7 quantitative trait locus is associated with an increased susceptibility to mammary cancer in congenic rats and an allele-specific imbalance. Cotroneo MS, etal., Oncogene. 2006 Aug 17;25(36):5011-7. Epub 2006 Mar 27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1563442Zfp385czinc finger protein 385C108556200385618100Rat
41241036LOC120095415small nucleolar RNA SNORA44108556625885566369Rat
21076281C10h17orf113-ps1similar to human chromosome 17 open reading frame 113, pseudogene 1108557383985576654Rat
41077213LOC120095293uncharacterized LOC120095293108557555485580104Rat
1310093Dhx58DEXH-box helicase 58108562035285631776Rat
1307242Kat2alysine acetyltransferase 2A108563221685640561Rat
1309122Hspb9heat shock protein family B (small) member 9108564128485641929Rat
1307095Rab5cRAB5C, member RAS oncogene family108564255385666142Rat
621415Kcnh4potassium voltage-gated channel subfamily H member 4108566833285688166Rat
11462129LOC108352136uncharacterized LOC108352136108568722485689434Rat
2786Hcrthypocretin neuropeptide precursor108568997985691214Rat
1308881GhdcGH3 domain containing108569361285697833Rat
3774Stat5bsignal transducer and activator of transcription 5B108570484185775856Rat
3773Stat5asignal transducer and activator of transcription 5A108578553785809869Rat
3772Stat3signal transducer and activator of transcription 3108581120685863057Rat
41019588LOC120095484U2 spliceosomal RNA108587276985872905Rat
1307685Cavin1caveolae associated protein 1108588410085896136Rat
41107818LOC120095498U6 spliceosomal RNA108591800185918107Rat
68405Atp6v0a1ATPase H+ transporting V0 subunit a1108593580285989901Rat
1564228NagluN-acetyl-alpha-glucosaminidase108600154586009049Rat
2836Hsd17b1hydroxysteroid (17-beta) dehydrogenase 1108600972886011928Rat
1549767CoasyCoenzyme A synthase108601456686018849Rat
1308590MlxMAX dimerization protein MLX108601921686024326Rat
621885Psmc3ipPSMC3 interacting protein108602428186027928Rat
1561189Retreg3reticulophagy regulator family member 3108602876786052575Rat
628606Tubg1tubulin, gamma 1108605284586059436Rat
1585798Tubg2tubulin, gamma 2108609120586108053Rat
1304854Plekhh3pleckstrin homology, MyTH4 and FERM domain containing H3108609846186106931Rat
1310716Ccr10C-C motif chemokine receptor 10108610855186110988Rat
70902Cntnap1contactin associated protein 1108610985086125612Rat
1305028Ezh1enhancer of zeste 1 polycomb repressive complex 2 subunit108612602386162001Rat
41376271LOC120095184uncharacterized LOC120095184108616721586169964Rat
61872Ramp2receptor activity modifying protein 2108618736686190692Rat
1584685Vps25vacuolar protein sorting 25 homolog108619606286201606Rat
631401Wnk4WNK lysine deficient protein kinase 4108620255286219655Rat
9203006Atp5mk-ps2ATP synthase membrane subunit K, pseudogene 2108620859086208921Rat
1564337Coa3cytochrome C oxidase assembly factor 3108622019286221173Rat
1564542Cntd1cyclin N-terminal domain containing 1108622143086231812Rat
620190Becn1beclin 1108623138786246742Rat
1306996Psme3proteasome activator subunit 3108625767286265458Rat
727941Aoc2-ps1amine oxidase, copper containing 2, pseudogene 1108626700786268473Rat
62058Aoc3amine oxidase, copper containing 3108627275786280702Rat
40950062LOC120095407U1 spliceosomal RNA108629847386298636Rat
2644G6pc1glucose-6-phosphatase catalytic subunit 1108630740086318766Rat
1561650Aarsd1alanyl-tRNA synthetase domain containing 1108634062586353732Rat
9413039Ptges3lprostaglandin E synthase 3 like108635401986361318Rat
1307490Rundc1RUN domain containing 1108636163586375446Rat
621192Rpl27ribosomal protein L27108637551186379210Rat
1304553Ifi35interferon-induced protein 35108638102386389279Rat
1308943Vat1vesicle amine transport 1108638954986397167Rat
1306172Rnd2Rho family GTPase 2108639915186402750Rat
2218Brca1BRCA1, DNA repair associated108641744186477762Rat
69195Nbr1NBR1, autophagy cargo receptor108647777586506418Rat
1309043Tmem106atransmembrane protein 106A108650690886515915Rat
7612562Ccdc200coiled-coil domain containing 200108651770486523106Rat
1596776Bax-ps2BCL2-associated X protein, pseudogene 2108652465886533056Rat
41356502LOC120095476U2 spliceosomal RNA108653422586534415Rat
11429765LOC108352174leucine-rich repeat-containing protein 37A3-like108654249386545769Rat
41089112LOC120095477U2 spliceosomal RNA108656210386562293Rat
1310432Rdm1RAD52 motif containing 1108656287186573034Rat
41023768LOC120095478U2 spliceosomal RNA108658078086580970Rat
40930232LOC120095479U2 spliceosomal RNA108658452586584715Rat
1306875Arl4dARF like GTPase 4D108659205486602843Rat
40934802LOC120095480U2 spliceosomal RNA108659278386592973Rat
1561590Sap18-ps1Sin3A associated protein 18, pseudogene 1108665735086657976Rat
1310723Dhx8DEAH-box helicase 8108666764186704198Rat
7610492Polr2l-ps3RNA polymerase II, I and III subunit L, pseudogene 3108669637186697618Rat
1306524Etv4ETS variant transcription factor 4108670674986721974Rat
1596730Ndufv3-ps2NADH:ubiquinone oxidoreductase subunit V3, pseudogene 2108674437886751105Rat
7527654LOC102546527uncharacterized LOC102546527108678355786788279Rat
7664110LOC102546446uncharacterized LOC102546446108679466486801737Rat
1308911Meox1mesenchyme homeobox 1108681845086837563Rat
69358Sostsclerostin108691251786915561Rat
1560049Dusp3dual specificity phosphatase 3108692001486933739Rat
1565533Cfap97d1CFAP97 domain containing 1108693358586944566Rat
620015Mpp3MAGUK p55 scaffold protein 3108694570586975261Rat
1584376Cd300lgCd300 molecule-like family member G108699188687009248Rat
620014Mpp2MAGUK p55 scaffold protein 2108701143487043883Rat
3385Ppypancreatic polypeptide108705474787056044Rat
1593289Pyypeptide YY108706115587062278Rat
41281133LOC120095294uncharacterized LOC120095294108708067987083716Rat
1565783NagsN-acetylglutamate synthase108709833087102465Rat
1306490Tmem101transmembrane protein 101108710511587108868Rat
1309441Lsm12LSM12 homolog108711833487140395Rat
727875G6pc3glucose 6 phosphatase catalytic subunit 3108714698787151223Rat
619980Hdac5histone deacetylase 5108715297887187921Rat
1305385Hrobhomologous recombination factor with OB-fold108720601787222483Rat
1563878Asb16ankyrin repeat and SOCS box-containing 16108722597687233078Rat
1304758Tmub2transmembrane and ubiquitin-like domain containing 2108723854387242968Rat
1311493Atxn7l3ataxin 7-like 3108724284387250186Rat
3927Ubtfupstream binding transcription factor108725821787274291Rat
3710Slc4a1solute carrier family 4 member 1 (Diego blood group)108730686587323132Rat
1590900Pno1-ps1partner of NOB1 homolog (S. cerevisiae), pseudogene 1108734603987347309Rat
735057Rundc3aRUN domain containing 3A108735262487361767Rat
1306193Slc25a39solute carrier family 25, member 39108736249487367358Rat
61983Grngranulin precursor108738767287393777Rat
1307966Fam171a2family with sequence similarity 171, member A2108739388887404051Rat
1596428Itga2bintegrin subunit alpha 2b108740853287426055Rat
1596463Gpatch8G patch domain containing 8108743202087512594Rat
11482925LOC10835213960S ribosomal protein L36 pseudogene108752776687528169Rat
7648353LOC102550111uncharacterized LOC102550111108753824387552344Rat
71012Fzd2frizzled class receptor 2108756186687563776Rat
1591208Atp6v0c-ps1ATPase H+ transporting V0 subunit C, pseudogene 1108757454487584265Rat
1563746Meiocmeiosis specific with coiled-coil domain108762880787646485Rat
1311929Ccdc43coiled-coil domain containing 43108765055487662788Rat
9450974LOC103693436uncharacterized LOC103693436108769411187694518Rat
41276998LOC120095185uncharacterized LOC120095185108770161987724858Rat
7649594Dbf4bDBF4B-CDC7 kinase regulatory subunit108771380587719197Rat
1307515Adam11ADAM metallopeptidase domain 11108772411587742773Rat
628889Gjc1gap junction protein, gamma 1108775819287785443Rat
1306907Higd1bHIG1 hypoxia inducible domain family, member 1B108779886487804459Rat
1560116Eftud2elongation factor Tu GTP binding domain containing 2108780489387852181Rat
1562370Dnaaf19dynein axonemal assembly factor 19108784632787849959Rat
1307851Fam187afamily with sequence similarity 187, member A108785086187852332Rat
2679Gfapglial fibrillary acidic protein108785289187861631Rat
1310360Kif18bkinesin family member 18B108787042487889895Rat
9420753Rpl22l4ribosomal protein L22 like 4108789394887894538Rat
1306039C1ql1complement C1q like 1108790212587909556Rat
1359211Dcakddephospho-CoA kinase domain containing108795773887989002Rat
628642Nmt1N-myristoyltransferase 1108798882688025405Rat
1310903Plcd3phospholipase C, delta 3108802670788048080Rat
1308404Acbd4acyl-CoA binding domain containing 4108804805888062612Rat
1559851Hexim1HEXIM P-TEFb complex subunit 1108806280888064920Rat
1311635Hexim2HEXIM P-TEFb complex subunit 2108807787088084776Rat
1311042Fmnl1formin-like 1108811587688143342Rat
2319718Efcab15EF-hand calcium binding domain 15108814338288153693Rat
1359156Spata32spermatogenesis associated 32108815324088164389Rat
41262638LOC120095296uncharacterized LOC120095296108815384988184195Rat
1310487Map3k14mitogen-activated protein kinase kinase kinase 14108816534988215558Rat
41159998LOC120095297uncharacterized LOC120095297108821375888225854Rat
735202Arhgap27Rho GTPase activating protein 27108828047088313225Rat
1308010Plekhm1pleckstrin homology and RUN domain containing M1108831383788366182Rat
1559753Lrrc37aleucine rich repeat containing 37A108839583788433519Rat
735046Prp2l1proline rich protein 2-like 1108846226288540642Rat
9180709LOC103693460uncharacterized LOC103693460108854067888551970Rat
1306968Lyzl6lysozyme-like 6108854434288549177Rat
1589060Rprmlreprimo-like108856024888561252Rat
62079Gosr2golgi SNAP receptor complex member 2108858529188605642Rat
1564452Magmas-ps1mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction, pseudogene 1108860237988602899Rat
41172258LOC120095298uncharacterized LOC120095298108860571288613782Rat
1309574Wnt9bWnt family member 9B108863533088657035Rat
3972Wnt3Wnt family member 3108868019888724170Rat
621594NsfN-ethylmaleimide sensitive factor, vesicle fusing ATPase108872791288857375Rat
621271Arf2ADP-ribosylation factor 2108886783688889654Rat
61276Crhr1corticotropin releasing hormone receptor 1108904018689083481Rat
1560562Sppl2csignal peptide peptidase like 2C108909527989097487Rat
69329Maptmicrotubule-associated protein tau108913864489236137Rat
6486111LOC100912629uncharacterized LOC100912629108914812389152191Rat
1311429Kansl1KAT8 regulatory NSL complex subunit 1108923766789368735Rat
41075489LOC120095423small nucleolar RNA SNORA21108926699089267117Rat
1304921Cdc27cell division cycle 27108940072089449816Rat
1591197Myl4myosin, light chain 4108944945689485365Rat
1591196Gstp1-ps2glutathione S-transferase pi 1, pseudogene 2108949816989499906Rat
628868Itgb3integrin subunit beta 3108950991789564679Rat
1305423Efcab3EF-hand calcium binding domain 3108958352690077260Rat
11381204LOC108352141uncharacterized LOC108352141108988662589887932Rat
41249496LOC120095378U6 spliceosomal RNA109003343690033542Rat
1310240Mettl2methyltransferase like 2109009552790109354Rat
1590899Cactin-ps2cactin, spliceosome C complex subunit, pseudogene 2109014221190155347Rat
1310907Tlk2tousled-like kinase 2109015444990248562Rat
41034882LOC120095467U6atac minor spliceosomal RNA109022333990223431Rat
41101625Cycs-ps6cytochrome c, somatic, pseudogene 6109022735690227705Rat
1559436Mrc2mannose receptor, C type 2109026198690323187Rat
41318785LOC120095186uncharacterized LOC120095186109026236690267267Rat
41334181LOC120095187uncharacterized LOC120095187109028417790289455Rat
1311692Marchf10membrane associated ring-CH-type finger 10109033278390423109Rat
40927017LOC120095189uncharacterized LOC120095189109034159690366478Rat
11389364LOC108352144uncharacterized LOC108352144109042062290461890Rat
40973775Trnav-aac25transfer RNA valine (anticodon AAC) 25109054823190548311Rat
1309285Tanc2tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2109055312490873477Rat
41337284LOC120095493U4 spliceosomal RNA109056480690564957Rat
41292971LOC120095191uncharacterized LOC120095191109065984090687446Rat
41135105LOC120095351U6 spliceosomal RNA109074981890749924Rat
9215295Snupn-ps1snurportin 1, pseudogene 1109081068190821759Rat
1310987Cyb561cytochrome b-561109087805290888734Rat
2493Aceangiotensin I converting enzyme109091031690930437Rat
41378188LOC120095193uncharacterized LOC120095193109091905390920018Rat
1561299Ace3angiotensin I converting enzyme (peptidyl-dipeptidase A) 3109093335990949035Rat
620304Kcnh6potassium voltage-gated channel subfamily H member 6109094924090970746Rat
1305140Dcaf7DDB1 and CUL4 associated factor 7109097409590996275Rat
1306784Taco1translational activator of cytochrome c oxidase I109100259091010494Rat
1304575Map3k3mitogen activated protein kinase kinase kinase 3109102017491088852Rat
1309967Limd2LIM domain containing 2109109027991092772Rat
727905StradaSTE20 related adaptor alpha109109484991123890Rat
1308813Ccdc47coiled-coil domain containing 47109113030391148829Rat
1304909Ddx42DEAD-box helicase 42109114892691180940Rat
1307110Ftsj3FtsJ RNA 2'-O-methyltransferase 3109118094591187389Rat
708376Psmc5proteasome 26S subunit, ATPase 5109118776391193697Rat
41071609LOC120095430small nucleolar RNA SNORA51109119022791190352Rat
69289Smarcd2SWI/SNF related BAF chromatin remodeling complex subunit D2109119375291202817Rat
69435Tcam1testicular cell adhesion molecule 1109120847091220484Rat
2686Gh1growth hormone 1109122810291230079Rat
620012Cd79bCD79b molecule109123935491242500Rat
3636Scn4asodium voltage-gated channel alpha subunit 4109124693691296670Rat
11498743LOC108352146uncharacterized LOC108352146109126843491276253Rat
1307288Prr29proline rich 29109130582091320661Rat
1359660Icam2intercellular adhesion molecule 2109130860891319536Rat
1559716Ern1endoplasmic reticulum to nucleus signaling 1109132688991421201Rat
41285482Rps10-ps6ribosomal protein S10, pseudogene 6109140280291403291Rat
7650056LOC102546698uncharacterized LOC102546698109143517591435535Rat
41075578Snord104small nucleolar RNA, C/D box 104109143531391435382Rat
41231368Snora50csmall nucleolar RNA, H/ACA box 50C109143557091435702Rat
1305112Tex2testis expressed 2109143662991546240Rat
41384166Trnap-agg83transfer RNA proline (anticodon AGG) 83109145255691452636Rat
61927Pecam1platelet and endothelial cell adhesion molecule 1109159052191652279Rat
620488Milr1mast cell immunoglobulin-like receptor 1109168428891705284Rat
1305128Polg2DNA polymerase gamma 2, accessory subunit109171258691723008Rat
619906Ddx5DEAD-box helicase 5109172350891732210Rat
9685093Mir3064microRNA 3064109172580091725866Rat
1309655Cep95centrosomal protein 95109173211191760095Rat
1310067Smurf2SMAD specific E3 ubiquitin protein ligase 2109176179891862485Rat
41360186Trnaa-agc91transfer RNA alanine (anticodon AGC) 91109178763191787711Rat
41351506LOC120095301survival of motor neuron-related-splicing factor 30-like109187048191872151Rat
11437264LOC108352149uncharacterized LOC108352149109190004691902191Rat
621419Kpna2karyopherin subunit alpha 2109193395191946115Rat
11508819Trnar-ccg2transfer RNA arginine (anticodon CCG) 2109195840491958476Rat
1565033C10h17orf58similar to human chromosome 17 open reading frame 58109197293891977606Rat
1307039Bptfbromodomain PHD finger transcription factor109198027992082731Rat
41304974LOC120095194uncharacterized LOC120095194109205226592054945Rat
41291495LOC120095432U11 spliceosomal RNA109209115592091288Rat
1584081Nol11nucleolar protein 11109211900092141688Rat
1562577Actb-ps10actin, beta, pseudogene 10109214217692143796Rat
1597047Pitpnc1phosphatidylinositol transfer protein, cytoplasmic 1109216355892428971Rat
41017670Snora80dsmall nucleolar RNA, H/ACA box 80D109218865792188789Rat
7727987Mea1-ps1male-enhanced antigen 1, pseudogene 1109223205792232595Rat
41186811LOC120095410small nucleolar RNA SNORA8109231467392314811Rat
1359290Rpl17-ps16ribosomal protein L17, pseudogene 16109237373592374368Rat
1582971Rps23-ps9ribosomal protein S23, pseudogene 9109243427492434789Rat
1359305Psmd12proteasome 26S subunit, non-ATPase 12109243822392457323Rat
1307049Helzhelicase with zinc finger109247940392645234Rat
2249Cacng1calcium voltage-gated channel auxiliary subunit gamma 1109265292492665612Rat
41352320LOC120095197uncharacterized LOC120095197109266150292683626Rat
628804Cacng4calcium voltage-gated channel auxiliary subunit gamma 4109268377892745842Rat
11397811LOC108352150uncharacterized LOC108352150109271883292732169Rat
11411384LOC108352151uncharacterized LOC108352151109278403392784721Rat
628805Cacng5calcium voltage-gated channel auxiliary subunit gamma 5109282744192869632Rat
3395Prkcaprotein kinase C, alpha109288939093288013Rat
1310625Apohapolipoprotein H109334243593356334Rat
1564168Cep112centrosomal protein 112109336605993833133Rat
40973555LOC120095198uncharacterized LOC120095198109382537593830198Rat
41189455LOC120095199uncharacterized LOC120095199109386833193886407Rat
69259Axin2axin 2109389383093927042Rat
11444070LOC108352227uncharacterized LOC108352227109393581193938379Rat
40994897LOC120095200uncharacterized LOC120095200109398628694022344Rat
7698326LOC102550112uncharacterized LOC102550112109401627294038653Rat
7529341LOC102550334uncharacterized LOC102550334109404316194103566Rat
41387346LOC120095201uncharacterized LOC120095201109410493294119320Rat
41147803LOC120095202uncharacterized LOC120095202109413667794144071Rat
7551922LOC102550454uncharacterized LOC102550454109416157394170717Rat
1597401Rpl10a-ps5ribosomal protein L10A, pseudogene 5109417369994175006Rat
1565459Mifl4macrophage migration inhibitory factor like 4109419199894192520Rat
3572Rgs9regulator of G-protein signaling 9109419526594270892Rat
7579672LOC102550782uncharacterized LOC102550782109424150994246052Rat
41120726LOC120095203uncharacterized LOC120095203109428954194296979Rat
7625474LOC102550846uncharacterized LOC102550846109431685794318116Rat
1310221Gna13G protein subunit alpha 13109433793994370774Rat
1304846Amz2archaelysin family metallopeptidase 2109440154694412116Rat
1306571Arsgarylsulfatase G109441226194551224Rat
735117Slc16a6solute carrier family 16, member 6109442437794447482Rat
1307754Wipi1WD repeat domain, phosphoinositide interacting 1109454294694580174Rat
6488368LOC100912202uncharacterized LOC100912202109461743494621315Rat
3391Prkar1aprotein kinase cAMP-dependent type I regulatory subunit alpha109462104294639534Rat
1306364Fam20aFAM20A, golgi associated secretory pathway pseudokinase109463883694697814Rat
15595781700012B07RiklRIKEN cDNA 1700012B07 gene like109477147194804839Rat
7651542Rpl23a-ps1ribosomal protein L23a, pseudogene 1109491637594916960Rat
1307069Abca8ATP binding cassette subfamily A member 8109491752094991199Rat
1307333Abca8aATP-binding cassette, subfamily A (ABC1), member 8a109500233495072315Rat
1305931Abca9ATP binding cassette subfamily A member 9109507761595137751Rat
1308998Abca6ATP binding cassette subfamily A member 6109514280595212087Rat
628661Abca5ATP binding cassette subfamily A member 5109524015995309195Rat
620666Map2k6mitogen-activated protein kinase kinase 6109537330495490406Rat
7693387LOC102551705uncharacterized LOC102551705109551345495528950Rat
11381410LOC108352228uncharacterized LOC108352228109576427695778029Rat
61824Kcnj16potassium inwardly-rectifying channel, subfamily J, member 16109599000996021356Rat
41147005LOC120095205uncharacterized LOC120095205109600747396018517Rat
40991355LOC120095206uncharacterized LOC120095206109605691996060698Rat
61968Kcnj2potassium inwardly-rectifying channel, subfamily J, member 2109606083496071397Rat
11396194LOC108352153uncharacterized LOC108352153109631197996366541Rat
11358786LOC108352154uncharacterized LOC108352154109636815996380190Rat
2323140Fcf1-ps2Fcf1 rRNA-processing protein, pseudogene 2109670907896709724Rat
1565086Ube2c-ps1ubiquitin-conjugating enzyme E2C, pseudogene 1109707829097079160Rat
41145218LOC120095207uncharacterized LOC120095207109717843497201392Rat
41357600LOC120095209uncharacterized LOC120095209109745199197464219Rat
7737388LOC102547123uncharacterized LOC102547123109763351897648796Rat
11422283LOC108352188high mobility group protein B3 pseudogene109765561197657071Rat
9136714LOC103693474uncharacterized LOC103693474109775472397756670Rat
620474Sox9SRY-box transcription factor 9109780648597811994Rat
7566917LOC102549521uncharacterized LOC102549521109801374198022561Rat
7611149LOC102549596uncharacterized LOC102549596109804971498085007Rat
7734651LOC102549836uncharacterized LOC102549836109807489798232243Rat
11366916LOC108352157uncharacterized LOC108352157109813640098152364Rat
9685629Mir297microRNA 297109821647998216544Rat
1311981Slc39a11solute carrier family 39, member 11109827595898697042Rat
41378255LOC120095210uncharacterized LOC120095210109839472598400326Rat
41106371Trnaa-ugc10transfer RNA alanine (anticodon UGC) 10109848991898489992Rat
3763Sstr2somatostatin receptor 2109866420498671370Rat
1304594Cog1component of oligomeric golgi complex 1109869548198708495Rat
1563409Vcf1VCP nuclear cofactor family member 1109870740498728486Rat
1359207Mtnap1mitochondrial nucleoid associated protein 1109872866198738693Rat
1306397Cpsf4lcleavage and polyadenylation specific factor 4-like109874181698756069Rat
1311567Cdc42ep4CDC42 effector protein 4109877261398797924Rat
1310397Sdk2sidekick cell adhesion molecule 2109882491699102590Rat
7689502LOC102547853uncharacterized LOC102547853109890697998941230Rat
7593118LOC102547687uncharacterized LOC102547687109906304999071550Rat
41006281LOC120095211uncharacterized LOC120095211109912871999139667Rat
7658394LOC102548022uncharacterized LOC102548022109923331399267271Rat
40948865LOC120095337uncharacterized LOC120095337109930475999312501Rat
41116026LOC120095212uncharacterized LOC120095212109937129899400738Rat
1305573Rpl38ribosomal protein L38109970133099705004Rat
1562969Ttyh2tweety family member 2109970906399753449Rat
1359602Dnai2dynein, axonemal, intermediate chain 2109975996699793379Rat
41400420LOC120095402small nucleolar RNA SNORA67109977276499772893Rat
1559936Kif19kinesin family member 19109980018599826546Rat
1563331Btbd17BTB domain containing 17109982613299832624Rat
1559926Gpr142G protein-coupled receptor 142109984006999843410Rat
1311408Gprc5cG protein-coupled receptor, class C, group 5, member C109988690099908928Rat
1583719Cd300aCd300a molecule109992980199942674Rat
1583718Cd300lbCD300 molecule-like family member b109996480199974790Rat
1559458Cd300c-ps1CD300c molecule, pseudogene 110100004943100010110Rat
1562156Cd300ldl1Cd300 molecule-like family member D like 110100056712100078276Rat
2319739Cd300ldCd300 molecule-like family member D10100082957100115853Rat
6502330Cd300cl1CD300c molecule like 110100117788100126304Rat
1562667Cd300c2l1CD300C molecule 2 like 110100136144100140607Rat
41394609Slc25a5-ps13solute carrier family 25 member 5, pseudogene 1310100153609100154533Rat
1592119Igsf7immunoglobulin superfamily, member 710100153767100161589Rat
1564512Slc25a5-ps5solute carrier family 25 member 5, pseudogene 510100174797100175737Rat
1559482Igsf7l1immunoglobulin superfamily, member 7 like 110100174955100182713Rat
9443602Cd300ld-ps1Cd300 molecule-like family member D, pseudogene 110100188157100192555Rat
1563057CD300c-ps2CD300c molecule, pseudogene 210100198793100203759Rat
1565161Cd300cCD300c molecule10100228254100233207Rat
1561778Cd300c2CD300C molecule 210100253312100258553Rat
1586269Slc25a5-ps8solute carrier family 25 member 5, pseudogene 810100260249100261714Rat
1305426Cd300leCd300 molecule-like family member E10100271076100280400Rat
1585137Cd300eCd300e molecule10100289729100309996Rat
1586145Rpl6-ps9ribosomal protein L6, pseudogene 910100299625100302548Rat
9228340LOC103693477uncharacterized LOC10369347710100312410100321685Rat
41341585Trnaa-agc73transfer RNA alanine (anticodon AGC) 7310100332749100332832Rat
2319982Rab37RAB37, member RAS oncogene family10100334639100401974Rat
1309733Cd300lfCd300 molecule-like family member F10100359942100376130Rat
708538Nherf1NHERF family PDZ scaffold protein 110100403189100420290Rat
1307096Nat9N-acetyltransferase 910100422326100427510Rat
1307953Tmem104transmembrane protein 10410100427244100485890Rat
2739Grin2cglutamate ionotropic receptor NMDA type subunit 2C10100488430100507083Rat
621648Fdxrferredoxin reductase10100507863100516649Rat
1311950Fads6fatty acid desaturase 610100522981100538181Rat
1304551Ush1gUSH1 protein network component sans10100559721100563590Rat
1304830Otop2otopetrin 210100564727100574298Rat
1306663Otop3otopetrin 310100577346100588729Rat
1311422Hid1HID1 domain containing10100589555100610050Rat
1306881Cdr2lcerebellar degeneration-related protein 2-like10100625150100638669Rat
1307942Mrpl58mitochondrial ribosomal protein L5810100646374100652871Rat
11407049Trnar-ccu7transfer RNA arginine (anticodon CCU) 710100654877100654949Rat
11507218Trnar-ccu8transfer RNA arginine (anticodon CCU) 810100655228100655300Rat
11494208Trnar-ucg2transfer RNA arginine (anticodon UCG) 210100655695100655767Rat
620083Atp5pdATP synthase peripheral stalk subunit d10100657700100662960Rat
1566063Kctd2potassium channel tetramerization domain containing 210100663013100674756Rat
1311352Trim80tripartite motif protein 8010100682826100691152Rat
1582896Slc16a5solute carrier family 16 member 510100707434100721338Rat
1310043Armc7armadillo repeat containing 710100723080100739636Rat
2321875Nt5c5', 3'-nucleotidase, cytosolic10100739591100742276Rat
1359325Jpt1Jupiter microtubule associated homolog 110100744468100762504Rat
41132968LOC120093044small nucleolar RNA SNORA1910100770794100770925Rat
621761Sumo2small ubiquitin-like modifier 210100771941100784503Rat
40961797Ftl1-ps10ferritin light chain 1, pseudogene 1010100802981100803581Rat
1311942Nup85nucleoporin 8510100806482100825029Rat
1309553Gga3golgi associated, gamma adaptin ear containing, ARF binding protein 310100825427100843422Rat
41126172LOC120095367U6 spliceosomal RNA10100841109100841219Rat
1309164Mrps7mitochondrial ribosomal protein S710100843691100846838Rat
1309685Mif4gdMIF4G domain containing10100847168100852166Rat
1359554Slc25a19solute carrier family 25 member 1910100853554100867517Rat
619758Grb2growth factor receptor bound protein 210100881404100949193Rat
41119811LOC120095390small nucleolar RNA SNORA7010100964850100964982Rat
41200060U6l12U6 spliceosomal RNA like 1210100984804100984906Rat
7685108Tmem94transmembrane protein 9410100991523101027046Rat
41070056Dppa2l-ps3developmental pluripotency-associated 2 like, pseudogene 310100994741100999028Rat
4888579Mir3577microRNA 357710101023869101023981Rat
1309738Caskin2cask-interacting protein 210101027196101041429Rat
1597379Tsen54tRNA splicing endonuclease subunit 5410101041607101050088Rat
1560307Llgl2LLGL scribble cell polarity complex component 210101050978101086527Rat
1597365Myo15bmyosin XVB10101088734101126159Rat
1310823Recql5RecQ like helicase 510101126544101165739Rat
1586374Smim5small integral membrane protein 510101134033101139814Rat
7720946Erlnendoregulin10101144577101147160Rat
1565537Sap30bpSAP30 binding protein10101165777101198503Rat
2321678Rps18l1ribosomal protein S18-like 110101204519101205067Rat
2928Itgb4integrin subunit beta 410101206657101243012Rat
1305375Galk1galactokinase 110101243146101247323Rat
621095H3f3bH3.3 histone B10101256484101258716Rat
1309224Unkunk zinc finger10101265732101295950Rat
628593Unc13dunc-13 homolog D10101296755101311513Rat
620032Wbp2WW domain binding protein 210101312476101320775Rat
7503996LOC102552044uncharacterized LOC10255204410101320917101341100Rat
1597317Trim47tripartite motif-containing 4710101337573101342044Rat
40942668LOC120093105uncharacterized LOC12009310510101343364101364468Rat
1559497Trim65tripartite motif-containing 6510101357937101364036Rat
1311180Mrpl38mitochondrial ribosomal protein L3810101365353101372159Rat
1310662Fbf1Fas binding factor 110101375769101401624Rat
619757Acox1acyl-CoA oxidase 110101406197101431252Rat
1311078Ten1TEN1 subunit of CST complex10101431328101455105Rat
1306141Evplenvoplakin10101458227101474778Rat
1305376Srp68signal recognition particle 6810101481213101508035Rat
41131801LOC120095213uncharacterized LOC12009521310101490110101491580Rat
2657Galr2galanin receptor 210101513689101517176Rat
620236Exoc7exocyst complex component 710101521630101540425Rat
621764Foxj1forkhead box J110101566299101570370Rat
11506243LOC108352160uncharacterized LOC10835216010101571155101586495Rat
1591154Rnf157ring finger protein 15710101571972101639874Rat
1311298Ubald2UBA-like domain containing 210101662507101667089Rat
1562974Qrich2glutamine rich 210101669240101697643Rat
620206Prpsap1phosphoribosyl pyrophosphate synthetase-associated protein 110101701094101750753Rat
10412358Khps1asphk1a antisense transcript10101758466101759755Rat
620048Sphk1sphingosine kinase 110101758567101764240Rat
1310297Ube2oubiquitin-conjugating enzyme E2O10101765572101812736Rat
41380343LOC120095357U6 spliceosomal RNA10101808139101808246Rat
1559519Rpl14-ps1ribosomal protein L14, pseudogene 110101823987101824649Rat
2006Aanataralkylamine N-acetyltransferase10101827072101831805Rat
1309699Rhbdf2rhomboid 5 homolog 210101833157101860283Rat
69415Cygbcytoglobin10101877675101887442Rat
6488422Prcdphotoreceptor disc component10101887192101907647Rat
41259286Snord1csmall nucleolar RNA, C/D box 1C10101905797101905872Rat
41268363LOC120095397small nucleolar RNA R3810101907729101907804Rat
11391163LOC108352161uncharacterized LOC10835216110101907879101909302Rat
1560747St6galnac2ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 210101910220101928412Rat
1562048St6galnac1ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 110101972656101983053Rat
1594666Mxra7matrix remodeling associated 710102003034102031428Rat
1305395Jmjd6jumonji domain containing 6, arginine demethylase and lysine hydroxylase10102041131102047182Rat
1306284Mettl23methyltransferase 23, arginine10102047090102053379Rat
1359422Srsf2serine and arginine rich splicing factor 210102052158102055365Rat
1307394Mfsd11major facilitator superfamily domain containing 1110102055516102075064Rat
1305188Mgat5balpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B10102120757102190235Rat
6489294LOC100912002uncharacterized LOC10091200210102275964102278092Rat
41249041Scarna16small Cajal body-specific RNA 1610102276365102276548Rat
1563123Sec14l1SEC14-like lipid binding 110102319920102367070Rat
40973997Rpl12-ps9ribosomal protein L12, pseudogene 910102335984102342705Rat
7606875LOC102547461uncharacterized LOC10254746110102365521102371047Rat
708523Septin9septin 910102409798102579056Rat
40962635LOC120095338uncharacterized LOC12009533810102679056102679709Rat
41339413LOC120095215uncharacterized LOC12009521510102700854102711178Rat
41047789LOC120095216uncharacterized LOC12009521610102709185102716649Rat
40962029LOC120095218uncharacterized LOC12009521810102722060102756134Rat
41374005LOC120095217uncharacterized LOC12009521710102722625102723996Rat
7555371LOC102546977uncharacterized LOC10254697710102767337102772610Rat
6487731LOC100912319uncharacterized LOC10091231910102797707102845427Rat
1310027Tnrc6ctrinucleotide repeat containing adaptor 6C10102908958102979543Rat
1591146Tmc6transmembrane channel like 610102982059102999509Rat
1591150Tmc8transmembrane channel-like 810103000038103010601Rat
1591144C10h17orf99similar to human chromosome 17 open reading frame 9910103015371103027407Rat
41212192LOC120095354U6 spliceosomal RNA10103024725103024828Rat
621334Syngr2synaptogyrin 210103029903103034473Rat
621014Tk1thymidine kinase 110103034755103046125Rat
1591143Afmidarylformamidase10103046129103061718Rat
7539496LOC102548046uncharacterized LOC10254804610103055865103057531Rat
70499Birc5baculoviral IAP repeat-containing 510103072530103081382Rat
1591141Tmem235transmembrane protein 23510103081716103092187Rat
1591140Tha1threonine aldolase 110103094681103100169Rat
41243579LOC120095219uncharacterized LOC12009521910103113533103115901Rat
41242416LOC120095220uncharacterized LOC12009522010103115944103119116Rat
41366572LOC120095340uncharacterized LOC12009534010103119236103123667Rat
621087Socs3suppressor of cytokine signaling 310103193909103197322Rat
1305052Pgs1phosphatidylglycerophosphate synthase 110103214635103250254Rat
1563805Dnah17dynein, axonemal, heavy chain 1710103244144103364953Rat
41163197LOC120095221uncharacterized LOC12009522110103262366103264333Rat
620397Cyth1cytohesin 110103402727103485826Rat
1309937Usp36ubiquitin specific peptidase 3610103497349103528877Rat
61312Timp2TIMP metallopeptidase inhibitor 210103541199103590611Rat
1597046Cep295nlCEP295 N-terminal like10103562190103581183Rat
620837Lgals3bpgalectin 3 binding protein10103619912103629251Rat
628743Cant1calcium activated nucleotidase 110103637079103650240Rat
7683659LOC102548791uncharacterized LOC10254879110103655144103658176Rat
1359204C1qtnf1C1q and TNF related 110103660319103681662Rat
1310868Engaseendo-beta-N-acetylglucosaminidase10103707169103719833Rat
1560070Rbfox3RNA binding fox-1 homolog 310103720355104157277Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
44808D10Got124150108556546985565619Ratregion
44808D10Got124150108556546985565684Ratregion
5063926BE120261161108563231185632472Ratregion
5503994Gcn5l2941108563724785638188Ratregion
5086070AW529475201108564188085642081Ratregion
5040576RH128363193108564260385642796Ratregion
5076966RH139482217108569000185690218Ratregion
5501261PMC18213P1901108569030485691205Ratregion
5034341SGC31491148108569313885693286Ratregion
5049490RH133511202108569365885693860Ratregion
5078944RH140642192108570528485705476Ratregion
5052063RH94818170108570712885707298Ratregion
5053895RH142912205108572882085729025Ratregion
5060662BI292922165108577952585779690Ratregion
5076308RH139100159108578037485780533Ratregion
44810D10Got12393108579466785794762Ratregion
5052065RH94819243108581257985812822Ratregion
5054573RH143302104108581283285812936Ratregion
5087566PMC317074P1231108581407885814309Ratregion
5035901PMC303343P1231108581407885814309Ratregion
5034692BF417681151108585321185853362Ratregion
5034870AA849865128108588235185882479Ratregion
39510D10Rat207143108588704085887185Ratregion
5065716BF412836113108596070885960821Ratregion
5047284RH132239162108598973485989896Ratregion
5054823RH143446133108600161286001745Ratregion
5051196RH134495181108600871886008899Ratregion
5052785RH142272192108600874686008938Ratregion
5501726Hsd17b1795108601052686011321Ratregion
1635170D10Wox46194108601220086012394Ratregion
5084492AI176866110108601867286018782Ratregion
5506266SHGC-53165167108602057186021201Ratregion
5503132MLX622108602057786021199Ratregion
5039722RH127869210108602388486024094Ratregion
5500645RH136418272108602443286024704Ratregion
5035635A005R24290108602878686029076Ratregion
5084244AI176419186108603393086034116Ratregion
5040522RH128331184108605917686059360Ratregion
5025094RH126885210108605920686059416Ratregion
5089315AU049083300108607985286080152Ratregion
33676D13Mit11137108609084786090990Ratregion
5085375BE097407165108610905586109220Ratregion
5085465BM391105151108611041186110562Ratregion
5030949BE108457172108611396686114138Ratregion
5033957RH140759241108612524286125483Ratregion
5043104RH129834198108612606486126262Ratregion
5501854MARC_15753-15754:1017935735:1812108612877486129586Ratregion
5503900BARC0021483108612953386130016Ratregion
5071056RH134861192108613312186133313Ratregion
5040436RH128282197108619046686190663Ratregion
5502020MARC_24031-24032:1029960467:1885108619829186199177Ratregion
5502078MARC_27470-27471:1034353500:1896108619829686199193Ratregion
5051521AW10746792108620113886201230Ratregion
5502449RH124894139108620132786201466Ratregion
5040832RH128509191108620139286201583Ratregion
5072784RH137051218108620870386208921Ratregion
5504684PMC357052P1620108621137286211993Ratregion
5051288RH134547180108621943786219617Ratregion
5042642RH129557188108622022286220410Ratregion
5039644RH127824204108623156386231767Ratregion
5052607RH125921238108626512786265365Ratregion
5041952RH129153214108626518286265396Ratregion
5052011RH94788199108631764386317842Ratregion
5042600RH1295330108631848086318677Ratregion
5502483RH12501581108634728486347365Ratregion
5056439RH144379148108635346886353616Ratregion
5047698RH132477186108635477486354960Ratregion
5043638RH130141180108637158286371762Ratregion
5071626RH135191198108638902186389219Ratregion
5041948RH129151377108638955286389929Ratregion
5502164MARC_7249-7250:996687691:1874108640085186401726Ratregion
5049610RH133579193108640255286402745Ratregion
1579190D10Chm56231108642080586421038Ratregion
67338D10Arb30129108645711786457246Ratregion
5038956RH127429196108651545486515650Ratregion
5502216GDB:632822581108653227986532860Ratregion
5031254PMC114802P1472108653232086532859Ratregion
5035899PMC30226P1413108653240786532820Ratregion
7192144Bax147108653262986532776Ratregion
5027975D17911162108653278586532947Ratregion
1579100D10Chm57195108653812286538330Ratregion
5071460RH135095182108657283886573020Ratregion
5075532RH138648150108658002386580174Ratregion
5053693RH142796106108658428686584392Ratregion
5075532RH138648150108658532086585470Ratregion
5500097UniSTS:236742210108660165286601862Ratregion
5044414RH130589259108660235086602609Ratregion
61322D10Mco8324108661046186610785Ratregion
5507571G61998158108665751086657668Ratregion
5032461D11Ertd539e202108665761986657821Ratregion
66500D10Mco67212108666207586662287Ratregion
5061750BF40297193108670480286704895Ratregion
5047768RH132517215108670677086706985Ratregion
5032227X63190132108670713286707264Ratregion
5053845RH142884291108671011186710402Ratregion
42931D10Rat235127108680759386807720Ratregion
5053669RH142782145108681865886818803Ratregion
66693D10Uia7258108687567086875928Ratregion
5041096RH128660202108692005986920261Ratregion
5034187RH141697206108692228086922486Ratregion
5059056BE102766161108693108186931242Ratregion
5036979AU049811121108693973586939856Ratregion
5061284BI287021167108694422286944389Ratregion
5041084RH128653181108694572386945904Ratregion
5070323AF079366115108694600886946123Ratregion
5050894RH134320204108701163487011838Ratregion
5073804RH137648190108701246187012651Ratregion
5082269BE119088155108702588187026036Ratregion
5061916BE112030187108703957587039762Ratregion
67319D10Arb15258108705506087055320Ratregion
629589D10Hmgc2183108705510887055287Ratregion
11137D10Wox17153108705512187055282Ratregion
5085052Ppy191108705526787055458Ratregion
5052069RH94822211108705542687055637Ratregion
5043832RH130253291108706119087061481Ratregion
5504959Pyy1049108706119387062242Ratregion
5053535RH142705276108707952087079796Ratregion
36019D10Rat18156108709561687095772Ratregion
5056155RH144215167108710525287105419Ratregion
5084124AA849209106108711779187117897Ratregion
5042166RH129278203108711927587119480Ratregion
5503180ksks317571108715034387150914Ratregion
5083331BG374822130108715162387151753Ratregion
5044306RH130527271108715302487153295Ratregion
5073698RH137587127108722206787222194Ratregion
5504270D17S1439E109108723928387240944Ratregion
5075994RH138916129108724035487240483Ratregion
5026246RH131473184108724249987242683Ratregion
5502196MARC_8253-8254:996688461:1385108724300387243388Ratregion
41932D10Arb13269108730758487307853Ratregion
11308D10Wox20111108730761787307728Ratregion
5050010RH133810195108736144087361635Ratregion
5052881RH142328187108736264187362828Ratregion
5075762RH138782134108738913387389267Ratregion
7387304rs8163932108739061687390616Ratregion
5025460RH128403197108739347387393670Ratregion
5027973D16195173108739359987393772Ratregion
1633129D10Wox31128108739363287393760Ratregion
1641607D10Wox3087108739367687393763Ratregion
5077800RH139967188108740852987408717Ratregion
5043736RH130197195108743202087432215Ratregion
5029081RH143445141108747840187478542Ratregion
1578991D10Chm262237108755481887555055Ratregion
5503039Fzd2657108756274187563398Ratregion
5503046Fzd2341108756291087563251Ratregion
5501231PMC16008P1387108756320587563592Ratregion
5078726RH140515121108756508787565208Ratregion
5037199RH98557146108764747187647617Ratregion
5043824RH130249194108765066187650855Ratregion
5084842AI171597111108765430187654412Ratregion
5066934AU048063215108765712987657343Ratregion
5049840RH133712209108780313587804378Ratregion
5086123AA859237211108780501687805227Ratregion
5500099UniSTS:236750104108780580987805913Ratregion
5502018MARC_23993-23994:1029524382:1796108780670487807500Ratregion
5055007RH143552138108781029287810430Ratregion
5086423BE107018160108784968887849848Ratregion
5046642RH131871205108785291187853116Ratregion
5066244PMC125376P2218108785291687853134Ratregion
1640315D10Wox54166108785696987857135Ratregion
5052665RH142195167108786079887860965Ratregion
1630539D10Wox35314108786202487862338Ratregion
5071222RH134958189108796245387962642Ratregion
5033125RH137689142108797320687973348Ratregion
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5053013RH14240416610101196330101196496Ratregion
5026970RH13422820010101198267101198467Ratregion
5067228AU04788414510101240329101240474Ratregion
5044900RH13086819810101242714101242912Ratregion
5051731RH9462516210101242819101242981Ratregion
5507049UniSTS:22418015810101256889101257047Ratregion
7205792RH4709611110101257662101257861Ratregion
5048142RH13273218010101295574101295754Ratregion
5050128RH13387820710101307291101307498Ratregion
5049332RH13342020310101312455101312658Ratregion
5072948RH13714619710101337739101337936Ratregion
5055637RH14391610510101341842101341947Ratregion
5046836RH13198221110101358040101358251Ratregion
5039084RH12750318410101365444101365628Ratregion
5041322RH12879018410101406255101406439Ratregion
5087504PMC21059P263510101406415101407050Ratregion
5087472PMC199556P19010101412196101412286Ratregion
35364D10Rat614610101435864101436010Ratregion
5070754RH13468521010101458302101458512Ratregion
1627187Srp6817910101481406101481585Ratregion
1626942Galr223010101514753101514983Ratregion
5046106RH13156118010101516894101517074Ratregion
5077980RH14007220010101521253101521453Ratregion
1635021D10Cebr220010101545465101545665Ratregion
5085070Foxj126110101567503101567764Ratregion
5036869AU04946514810101572087101572235Ratregion
5071902RH13535120410101574034101574238Ratregion
5025274RH12768821410101701122101701336Ratregion
5044382RH13057018010101764046101764226Ratregion
5028725AFMa071ze921910101802958101803177Ratregion
5028123D11Mit10215210101826812101826964Ratregion
1630499D10Wox5227410101827515101827789Ratregion
1626975Aanat23010101831462101831692Ratregion
5026734RH13333218310101877700101877883Ratregion
5038992RH12745018810101910284101910472Ratregion
5042466RH12945120110102003070102003271Ratregion
5042890RH12970618310102006688102006871Ratregion
5043592RH13011322010102009405102010773Ratregion
5067794AU04753229710102019712102020006Ratregion
5067794AU04753229710102019712102020095Ratregion
5045874RH13142820110102041227102041428Ratregion
5505338Jmjd6140810102043461102044869Ratregion
5049138RH13330736710102051347102051714Ratregion
5077260RH13965421610102051833102052049Ratregion
5036169D11Wsu175e22410102052252102052476Ratregion
5504793UniSTS:27563574410102052885102053630Ratregion
5506433UniSTS:47926583410102054314102055148Ratregion
5037117D4S2570E10710102055017102055124Ratregion
5049124RH13329919610102074320102074516Ratregion
35665D10Rat415610102134116102134272Ratregion
5067216AU04789115010102235509102235659Ratregion
5034173RH14164621510102275350102275565Ratregion
34202D10Mgh1613410102359683102359817Ratregion
5067086AU04797316710102378945102379112Ratregion
5071546RH13514518310102632184102632367Ratregion
5067556AU04767415810102676230102676388Ratregion
5047252RH13222119610102805250102805446Ratregion
5048432RH13290020310102979127102979330Ratregion
5067226AU04788525910102999096102999355Ratregion
5501245PMC165604P183810103007528103008366Ratregion
5504736PMC86057P126810103036286103036632Ratregion
5047386RH13229720110103055929103057382Ratregion
5032036AU02895214210103121575103121717Ratregion
5031342PMC148819P151310103195568103196081Ratregion
5066304PMC148819P213710103195944103196081Ratregion
5050968RH13436218910103250012103250201Ratregion
5048838RH13313522010103347056103347276Ratregion
36494D10Rat517210103349037103349209Ratregion
5074772RH13820916610103498793103498959Ratregion
5041162RH12869818010103541216103541396Ratregion
5050154RH13389321510103542146103542361Ratregion
7206106Timp217210103543868103544040Ratregion
7206104Timp212010103545903103546023Ratregion
7206100Timp210710103553466103553573Ratregion
7206102Timp210510103556030103556135Ratregion
7206098Ddc841510103568065103568480Ratregion
7206096Timp213010103590354103590484Ratregion
5036462Ppicap21810103620024103620242Ratregion
5036161D11Bwg0554e21210103637078103637290Ratregion
5048688RH13304821710103637140103637357Ratregion
5025628RH12904918010103681377103681557Ratregion
41042D10Rat13420710103784905103785112Ratregion
5084746AI22853024910103835819103836072Ratregion
5505526D2S147115310103878082103879235Ratregion
Position Markers

Flank 1: (D10Got124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,565,469 - 85,565,619 (+)MAPPER
mRatBN7.21085,565,469 - 85,565,684 (+)MAPPER
Rnor_6.01088,544,136 - 88,544,394NCBI
Rnor_6.01088,544,136 - 88,544,285NCBI
Rnor_5.01088,338,460 - 88,338,609UniSTS
Rnor_5.01088,338,460 - 88,338,718UniSTS
RGSC_v3.41089,575,060 - 89,575,209UniSTS
RGSC_v3.41089,575,059 - 89,575,209RGD
RGSC_v3.11089,589,430 - 89,589,579RGD
Celera1084,281,700 - 84,281,849UniSTS
RH 3.4 Map10838.5UniSTS
RH 3.4 Map10838.5RGD
RH 2.0 Map10966.6RGD
Cytogenetic Map10q32.1UniSTS
Peak: (D10Rat12)
Rat AssemblyChrPosition (strand)Source
GRCr81095,224,344 - 95,224,503 (+)Marker Load Pipeline
mRatBN7.21094,724,860 - 94,725,019 (+)MAPPER
Rnor_6.01098,044,675 - 98,044,833NCBI
Rnor_5.01097,758,850 - 97,759,008UniSTS
RGSC_v3.41099,198,839 - 99,198,997UniSTS
RGSC_v3.41099,198,838 - 99,198,997RGD
RGSC_v3.11099,213,209 - 99,213,367RGD
Celera1093,382,659 - 93,382,817UniSTS
RH 3.4 Map101070.7RGD
RH 3.4 Map101070.7UniSTS
RH 2.0 Map101162.5RGD
SHRSP x BN Map1076.13RGD
FHH x ACI Map1079.1RGD
Flank 2: (D10Mgh1)
Rat AssemblyChrPosition (strand)Source
Celera10102,748,696 - 102,748,839UniSTS
RH 2.0 Map101407.7RGD
Cytogenetic Map10 RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)109472486096836268Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)108932701790930437Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096120911104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
631539Oia6Oil induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1097010147104670812Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details one-way ANOVA analysis was used to determine the average number of carcinoma; allelic imbalance assessment was done by using acrylamide gel electrophoresis 15 weeks after DMBA induction 1581951