Elobl9 (elongin B like 9) - Rat Genome Database

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Gene: Elobl9 (elongin B like 9) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Elobl9
Name: elongin B like 9
RGD ID: 1564031
Description: Predicted to be involved in transcription elongation by RNA polymerase II.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongin-B-like; LOC501714; RGD1564031; similar to transcription elongation factor B (SIII), polypeptide 2
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,262,854 - 74,263,183 (+)NCBIGRCr8
mRatBN7.21073,765,641 - 73,765,970 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,765,617 - 73,765,970 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01076,295,387 - 76,297,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01073,812,425 - 73,812,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,411,735 - 77,412,064 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,670,370 - 72,672,108 (+)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elobl9Rattranscription elongation by RNA polymerase II involved_inIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elobl9Ratelongin complex part_ofIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002
Elobl9Ratelongin complex part_ofIBAFB:FBgn0023212|MGI:1914923|PANTHER:PTN000997498|UniProtKB:Q153701600115GO_REF:0000033GO_CentralGO_REF:0000033
Elobl9RatVCB complex part_ofIBAPANTHER:PTN000997498|RGD:6212001600115GO_REF:0000033GO_CentralGO_REF:0000033
Elobl9RatVCB complex part_ofIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Elobl9
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:40
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000071720
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat

1 to 10 of 84 rows






Ensembl Acc Id: ENSRNOT00000051823   ⟹   ENSRNOP00000060529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,765,617 - 73,765,970 (+)Ensembl
RefSeq Acc Id: XM_039087856   ⟹   XP_038943784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,262,854 - 74,263,183 (+)NCBI
mRatBN7.21073,765,641 - 73,765,970 (+)NCBI
Protein RefSeqs XP_038943784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060529
  ENSRNOP00000060529.3
RefSeq Acc Id: XP_038943784   ⟸   XM_039087856
- UniProtKB: D3ZNR1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000060529   ⟸   ENSRNOT00000051823
Ubiquitin-like

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZNR1-F1-model_v2 AlphaFold D3ZNR1 1-117 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 18 of 18 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23701 BioCyc
Ensembl Genes ENSRNOG00000029479 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051823 ENTREZGENE
  ENSRNOT00000051823.5 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro ELOB UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene 501714 ENTREZGENE
PANTHER ELONGIN B-LIKE UniProtKB/TrEMBL
  PTHR13248 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PhenoGen Elobl9 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029479 RatGTEx
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt D3ZNR1 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Elobl9  elongin B like 9  RGD1564031  similar to transcription elongation factor B (SIII), polypeptide 2  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564031  similar to transcription elongation factor B (SIII), polypeptide 2   RGD1564031_predicted  similar to transcription elongation factor B (SIII), polypeptide 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564031_predicted  similar to transcription elongation factor B (SIII), polypeptide 2 (predicted)  LOC501714  similar to transcription elongation factor B (SIII), polypeptide 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501714  similar to transcription elongation factor B (SIII), polypeptide 2      Symbol and Name status set to provisional 70820 PROVISIONAL