| 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 50574707 | 95574707 | Rat |
| 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat |
| 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 10 | 49444551 | 81709989 | Rat |
| 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 41142633 | 86142633 | Rat |
| 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 63221094 | 107211142 | Rat |
| 631555 | Bp134 | Blood pressure QTL 134 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 80515287 | 91230079 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 42045676 | 104670812 | Rat |
| 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat |
| 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 57576521 | 102576521 | Rat |
| 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 53797494 | 98952626 | Rat |
| 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 41333258 | 86333258 | Rat |
| 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 3.4 | | nervous system integrity trait (VT:0010566) | spinal cord RT1-B protein level (CMO:0002132) | 10 | 72224939 | 107211142 | Rat |
| 1579919 | Bp281 | Blood pressure QTL 281 | | 0.01 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 74372084 | 94965338 | Rat |
| 1302404 | Cia27 | Collagen induced arthritis QTL 27 | 2.6 | 0.0045 | joint integrity trait (VT:0010548) | experimental arthritis severity measurement (CMO:0001459) | 10 | 76452683 | 107211142 | Rat |
| 1300107 | Rf18 | Renal function QTL 18 | 3.41 | | urine output (VT:0003620) | timed urine volume (CMO:0000260) | 10 | 78775516 | 98279596 | Rat |
| 8694173 | Bw149 | Body weight QTL 149 | 4.38 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 10 | 44441699 | 89441699 | Rat |
| 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 45029650 | 95600334 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat |
| 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 53797385 | 107211142 | Rat |
| 10450495 | Bp383 | Blood pressure QTL 383 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 94965338 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2292617 | Ept18 | Estrogen-induced pituitary tumorigenesis QTL 18 | 3.9 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 10 | 73453136 | 96120911 | Rat |
| 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat |
| 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 62057807 | 107057807 | Rat |
| 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 10 | 69738412 | 107211142 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat |
| 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 42323132 | 87323132 | Rat |
| 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 10 | 69738412 | 107211142 | Rat |
| 724516 | Uae17 | Urinary albumin excretion QTL 17 | 3.6 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 10 | 78210622 | 85220348 | Rat |
| 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 10 | 72224939 | 107211142 | Rat |
| 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 62057807 | 107057807 | Rat |
| 9589030 | Epfw9 | Epididymal fat weight QTL 9 | 19.24 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 10 | 44441699 | 89441699 | Rat |
| 1357344 | Bp249 | Blood pressure QTL 249 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 66743655 | 98003205 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat |
| 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat |
| 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 42323132 | 87323132 | Rat |
| 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | fear/anxiety-related behavior trait (VT:1000241) | number of periods of voluntary immobility (CMO:0001045) | 10 | 61345276 | 98211570 | Rat |
| 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 10 | 51772940 | 96772940 | Rat |
| 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 10 | 69738412 | 107211142 | Rat |
| 7387312 | Bw125 | Body weight QTL 125 | 3 | 0.0047 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight (CMO:0000356) | 10 | 64890616 | 107211142 | Rat |
| 2312672 | Insul15 | Insulin level QTL 15 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 57134272 | 102134272 | Rat |
| 6893357 | Bw102 | Body weight QTL 102 | 0.5 | 0.36 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 80515287 | 101325465 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 66978955 | 107211142 | Rat |
| 2303589 | Bw87 | Body weight QTL 87 | 2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 81285008 | 107211142 | Rat |
| 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat |
| 2306793 | Ean5 | Experimental allergic neuritis QTL 5 | 4.7 | | nervous system integrity trait (VT:0010566) | IFNG-secreting splenocyte count (CMO:0002122) | 10 | 72552416 | 93995749 | Rat |
| 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 51770177 | 107211142 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 66978955 | 107211142 | Rat |
| 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 37565079 | 82565079 | Rat |
| 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 37565079 | 82565079 | Rat |
| 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | | 0.0169 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 65927233 | 82565079 | Rat |
| 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68420376 | 107211142 | Rat |
| 1358915 | Stresp7 | Stress response QTL 7 | 3.52 | | blood norepinephrine amount (VT:0005663) | plasma norepinephrine level (CMO:0001010) | 10 | 78899655 | 87307728 | Rat |
| 70363 | Bp71 | Blood pressure QTL 71 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 61345276 | 81714865 | Rat |
| 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 61345413 | 82564856 | Rat |
| 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat |
| 70364 | Bp72 | Blood pressure QTL 72 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 51121100 | 96121100 | Rat |
| 10450498 | Bp384 | Blood pressure QTL 384 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 67750049 | 107211142 | Rat |
| 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | pancreatic beta cell morphology trait (VT:0005217) | ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814) | 10 | 76748906 | 107211142 | Rat |
| 6893366 | Bw106 | Body weight QTL 106 | 0.3 | 0.47 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 70199100 | 107211142 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 59209888 | 104209888 | Rat |
| 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 0 | 0.0001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 10 | 51774612 | 95600334 | Rat |
| 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 54809292 | 99809292 | Rat |
| 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 61345276 | 99703528 | Rat |
| 631535 | Cm51 | Cardiac mass QTL 51 | 3 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 51786282 | 91669536 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | 0.0001 | femur mineral mass (VT:0010011) | compact volumetric bone mineral density (CMO:0001730) | 10 | 49444551 | 81709989 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 40035094 | 102359817 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat |
| 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 10 | 49444551 | 81709989 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 7411614 | Foco18 | Food consumption QTL 18 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 44441699 | 89441699 | Rat |
| 2325836 | Bp346 | Blood pressure QTL 346 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 84007272 | Rat |
| 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 61345276 | 99703528 | Rat |
| 12880053 | Cm104 | Cardiac mass QTL 104 | | 0.009 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 10 | 73452992 | 83463334 | Rat |
| 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 47369470 | 92369470 | Rat |
| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat |
| 2292438 | Bp311 | Blood pressure QTL 311 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 107211142 | Rat |
| 2312662 | Slep8 | Serum leptin concentration QTL 8 | | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 57134272 | 102134272 | Rat |
| 12880050 | Am10 | Aortic mass QTL 10 | | 0.016 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 74372084 | 84007272 | Rat |
| 1358188 | Ept9 | Estrogen-induced pituitary tumorigenesis QTL 9 | 3.9 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 10 | 73453136 | 96120911 | Rat |
| 631537 | Oia4 | Oil induced arthritis QTL 4 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 75631887 | 87055282 | Rat |
| 634354 | Rends3 | Renal damage susceptibility QTL 3 | | 0.05 | kidney blood vessel morphology trait (VT:0000530) | organ lesion measurement (CMO:0000677) | 10 | 79813789 | 85160854 | Rat |
| 1642980 | Bp300 | Blood pressure QTL 300 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68383129 | 107211142 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat |
| 2312668 | Scl65 | Serum cholesterol level QTL 65 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 57134272 | 102134272 | Rat |
