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Gene: Cxcl16 (C-X-C motif chemokine ligand 16) Rattus norvegicus
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Symbol: Cxcl16
Name: C-X-C motif chemokine ligand 16
Description: Predicted to have chemokine activity; low-density lipoprotein particle receptor activity; and scavenger receptor activity. Predicted to be involved in several processes, including T cell chemotaxis; cellular response to lipopolysaccharide; and response to interferon-gamma. Predicted to localize to the extracellular space and integral component of membrane. Orthologous to human CXCL16 (C-X-C motif chemokine ligand 16); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-X-C motif chemokine 16; chemokine (C-X-C motif) ligand 16; similar to chemokine (C-X-C motif) ligand 16; small-inducible cytokine B16; transmembrane chemokine CXCL16
Orthologs:
Homo sapiens (human) : CXCL16 (C-X-C motif chemokine ligand 16)  HGNC  Alliance
Mus musculus (house mouse) : Cxcl16 (chemokine (C-X-C motif) ligand 16)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cxcl16 (C-X-C motif chemokine ligand 16)
Pan paniscus (bonobo/pygmy chimpanzee) : CXCL16 (C-X-C motif chemokine ligand 16)
Canis lupus familiaris (dog) : CXCL16 (C-X-C motif chemokine ligand 16)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cxcl16 (C-X-C motif chemokine ligand 16)
Sus scrofa (pig) : CXCL16 (C-X-C motif chemokine ligand 16)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01057,060,005 - 57,064,600 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,060,007 - 57,064,600 (-)Ensembl
Rnor_5.01056,817,242 - 56,821,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,296,126 - 57,300,721 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1054,313,016 - 54,317,611 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Cxcl16
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1562928
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.