Cxcl16 (C-X-C motif chemokine ligand 16) - Rat Genome Database

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Gene: Cxcl16 (C-X-C motif chemokine ligand 16) Mus musculus
Analyze
Symbol: Cxcl16
Name: C-X-C motif chemokine ligand 16 (Ensembl:chemokine (C-X-C motif) ligand 16)
RGD ID: 1558593
MGI Page MGI
Description: Enables chemokine activity; low-density lipoprotein particle receptor activity; and scavenger receptor activity. Involved in T cell chemotaxis and cellular response to lipopolysaccharide. Acts upstream of or within endocytosis. Located in extracellular space and membrane. Is expressed in bladder; female associated reproductive structure; hindbrain meninges; male associated reproductive structure; and spinal cord meninges. Orthologous to human CXCL16 (C-X-C motif chemokine ligand 16).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0910001K24Rik; AV290116; b2b498C; b2b498Clo; BB024863; C-X-C motif chemokine 16; chemokine (C-X-C motif) ligand 16; Cxc chemokine ligand 16; CXCL16v1; CXCL16v2; Mutant line 498; scavenger receptor for phosphatidylserine and oxidized low density lipoprotein; small-inducible cytokine B16; SR; SR-PSOX; SR-PSOX/CXCL16; transmembrane chemokine CXCL16; zinc finger, MYND-type containing 15; Zmynd15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,345,215 - 70,350,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,344,809 - 70,350,810 (-)EnsemblGRCm39 Ensembl
GRCm381170,454,389 - 70,459,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,453,983 - 70,459,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,267,736 - 70,273,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,270,429 - 70,276,179 (-)NCBIMGSCv36mm8
Celera1178,000,199 - 78,005,953 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-octadec-9-enoylglycero-3-phosphate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
caffeine  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chenodeoxycholic acid  (EXP)
choline  (EXP)
cisplatin  (EXP)
cobalt atom  (EXP)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
glycine betaine  (ISO)
L-methionine  (EXP)
lidocaine  (ISO)
lipopolysaccharide  (EXP)
monocrotaline  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
Soman  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
taurocholic acid  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene 2,4-diisocyanate  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular space  (HDA,IBA,IDA,ISO)
membrane  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19. Blanco-Melo D, etal., Cell. 2020 May 28;181(5):1036-1045.e9. doi: 10.1016/j.cell.2020.04.026. Epub 2020 May 15.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Dysregulated expression of MIG/CXCL9, IP-10/CXCL10 and CXCL16 and their receptors in systemic sclerosis. Rabquer BJ, etal., Arthritis Res Ther. 2011 Feb 8;13(1):R18.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11017100   PMID:11042159   PMID:11060282   PMID:11076861   PMID:12477932   PMID:14634054   PMID:14699018   PMID:15004171   PMID:15265890   PMID:15489334  
PMID:15604417   PMID:15799695   PMID:15934948   PMID:15972488   PMID:16081769   PMID:16124049   PMID:16141072   PMID:16141073   PMID:16365394   PMID:16410312   PMID:16880330   PMID:16982830  
PMID:17328072   PMID:17363916   PMID:18056360   PMID:18194461   PMID:18287559   PMID:18619850   PMID:18713980   PMID:19079180   PMID:19426159   PMID:19893053   PMID:19919988   PMID:20181724  
PMID:20231379   PMID:20334513   PMID:20562862   PMID:20675388   PMID:20874518   PMID:21177121   PMID:21267068   PMID:21308776   PMID:21816936   PMID:21873635   PMID:22278019   PMID:22287719  
PMID:22927331   PMID:23138484   PMID:23242131   PMID:24006456   PMID:24060897   PMID:24388986   PMID:24752304   PMID:25209981   PMID:25372401   PMID:25456160   PMID:25495942   PMID:25661686  
PMID:25683115   PMID:25807483   PMID:26058873   PMID:26884839   PMID:27191747   PMID:27353044   PMID:27496882   PMID:27653694   PMID:27721466   PMID:28459937   PMID:28478039   PMID:29620052  
PMID:29800106   PMID:29891873   PMID:30015963   PMID:30467418   PMID:31379980   PMID:31712428   PMID:32360411   PMID:32634398   PMID:33185291   PMID:34396447   PMID:36153630   PMID:36373877  
PMID:36670424   PMID:36881904   PMID:38154213  


Genomics

Comparative Map Data
Cxcl16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,345,215 - 70,350,810 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,344,809 - 70,350,810 (-)EnsemblGRCm39 Ensembl
GRCm381170,454,389 - 70,459,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,453,983 - 70,459,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,267,736 - 70,273,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,270,429 - 70,276,179 (-)NCBIMGSCv36mm8
Celera1178,000,199 - 78,005,953 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
CXCL16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,733,533 - 4,739,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,733,533 - 4,739,928 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,636,828 - 4,643,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,583,577 - 4,589,972 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,583,583 - 4,589,863NCBI
Celera174,652,030 - 4,658,426 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,525,914 - 4,531,582 (-)NCBIHuRef
CHM1_1174,645,559 - 4,651,953 (-)NCBICHM1_1
T2T-CHM13v2.0174,623,202 - 4,629,598 (-)NCBIT2T-CHM13v2.0
Cxcl16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,665,355 - 55,669,950 (-)NCBIGRCr8
mRatBN7.21055,166,721 - 55,171,316 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,166,723 - 55,171,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,845,644 - 59,850,516 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,334,153 - 59,339,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,833,353 - 54,838,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,060,005 - 57,064,600 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,060,007 - 57,064,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,817,242 - 56,821,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,296,126 - 57,300,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1054,313,016 - 54,317,611 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cxcl16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546710,132,461 - 10,136,649 (-)NCBIChiLan1.0ChiLan1.0
CXCL16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,351,100 - 12,357,230 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,319,363 - 14,325,829 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,789,280 - 4,795,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,778,717 - 4,785,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,778,717 - 4,785,639 (-)Ensemblpanpan1.1panPan2
CXCL16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,816,889 - 31,820,975 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,816,667 - 31,820,840 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,955,979 - 31,960,601 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,921,756 - 31,926,380 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1531,888,075 - 31,892,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,847,757 - 31,852,370 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,023,989 - 32,028,615 (+)NCBIUU_Cfam_GSD_1.0
Cxcl16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,738,369 - 52,743,825 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366773,157,144 - 3,163,210 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366773,157,173 - 3,162,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCL16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,145,100 - 52,150,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,264,331 - 54,269,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,214,823 - 4,220,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,211,621 - 4,219,789 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,420,672 - 17,426,403 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcl16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,589,687 - 8,594,059 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1386
Count of miRNA genes:472
Interacting mature miRNAs:536
Transcripts:ENSMUST00000019064, ENSMUST00000126391, ENSMUST00000154475
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_023158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_151499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF277001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF301017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE956848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ380016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ380017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000019064   ⟹   ENSMUSP00000019064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,344,809 - 70,350,810 (-)Ensembl
GRCm38.p6 Ensembl1170,453,983 - 70,459,984 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126391   ⟹   ENSMUSP00000133513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,345,064 - 70,350,234 (-)Ensembl
GRCm38.p6 Ensembl1170,454,238 - 70,459,408 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,346,016 - 70,350,658 (-)Ensembl
GRCm38.p6 Ensembl1170,455,190 - 70,459,832 (-)Ensembl
RefSeq Acc Id: NM_023158   ⟹   NP_075647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,346,015 - 70,350,810 (-)NCBI
GRCm381170,455,189 - 70,459,984 (-)NCBI
MGSCv371170,267,736 - 70,273,486 (-)RGD
Celera1178,000,199 - 78,005,953 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_151496
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,346,015 - 70,350,810 (-)NCBI
GRCm381170,455,189 - 70,459,984 (-)NCBI
Sequence:
RefSeq Acc Id: NR_151497
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,345,215 - 70,350,810 (-)NCBI
GRCm381170,454,389 - 70,459,984 (-)NCBI
Sequence:
RefSeq Acc Id: NR_151499
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,346,015 - 70,350,810 (-)NCBI
GRCm381170,455,189 - 70,459,984 (-)NCBI
Sequence:
RefSeq Acc Id: NP_075647   ⟸   NM_023158
- Peptide Label: precursor
- UniProtKB: Q8VE25 (UniProtKB/Swiss-Prot),   Q5F2D5 (UniProtKB/Swiss-Prot),   Q3UD70 (UniProtKB/Swiss-Prot),   Q9EPB3 (UniProtKB/Swiss-Prot),   Q8BSU2 (UniProtKB/Swiss-Prot),   A2CFE9 (UniProtKB/TrEMBL),   I7HIQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000133513   ⟸   ENSMUST00000126391
RefSeq Acc Id: ENSMUSP00000019064   ⟸   ENSMUST00000019064
Protein Domains
C-X-C motif chemokine

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BSU2-F1-model_v2 AlphaFold Q8BSU2 1-246 view protein structure

Promoters
RGD ID:6820675
Promoter ID:MM_KWN:8213
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000013602,   OTTMUST00000040903,   UC007JUX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361170,273,066 - 70,273,566 (-)MPROMDB
RGD ID:8675318
Promoter ID:EPDNEW_M15690
Type:initiation region
Name:Cxcl16_2
Description:Mus musculus chemokine (C-X-C motif) ligand 16 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15692  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,459,665 - 70,459,725EPDNEW
RGD ID:8675322
Promoter ID:EPDNEW_M15692
Type:initiation region
Name:Cxcl16_1
Description:Mus musculus chemokine (C-X-C motif) ligand 16 , transcript variant4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15690  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,459,885 - 70,459,945EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1932682 AgrOrtholog
Ensembl Genes ENSMUSG00000018920 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019064 ENTREZGENE
  ENSMUST00000019064.9 UniProtKB/Swiss-Prot
  ENSMUST00000126391.2 UniProtKB/TrEMBL
  ENSMUST00000154475 ENTREZGENE
InterPro CXCL16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CXCL16_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66102 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1932682 ENTREZGENE
NCBI Gene 66102 ENTREZGENE
PANTHER C-X-C MOTIF CHEMOKINE 16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14385 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CXCL16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cxcl16 PhenoGen
UniProt A2CFE9 ENTREZGENE, UniProtKB/TrEMBL
  CXL16_MOUSE UniProtKB/Swiss-Prot
  D9YM45_MOUSE UniProtKB/TrEMBL
  I7HIQ2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UD70 ENTREZGENE
  Q5F2D5 ENTREZGENE
  Q8BSU2 ENTREZGENE
  Q8VE25 ENTREZGENE
  Q9EPB3 ENTREZGENE
UniProt Secondary Q3UD70 UniProtKB/Swiss-Prot
  Q5F2D5 UniProtKB/Swiss-Prot
  Q8VE25 UniProtKB/Swiss-Prot
  Q9EPB3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Cxcl16  C-X-C motif chemokine ligand 16  Cxcl16  chemokine (C-X-C motif) ligand 16  Symbol and/or name change 5135510 APPROVED