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Gene: Smg8 (SMG8 nonsense mediated mRNA decay factor) Rattus norvegicus
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Symbol: Smg8
Name: SMG8 nonsense mediated mRNA decay factor
RGD ID: 1306862
Description: Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and regulation of protein kinase activity. Orthologous to human SMG8 (SMG8 nonsense mediated mRNA decay factor); INTERACTS WITH (+)-schisandrin B; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC287596; RGD1306862; similar to RIKEN cDNA 1200011M11; smg-8 homolog, nonsense mediated mRNA decay factor; smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Orthologs:
Homo sapiens (human) : SMG8 (SMG8 nonsense mediated mRNA decay factor)  HGNC  Alliance
Mus musculus (house mouse) : Smg8 (smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Smg8 (SMG8 nonsense mediated mRNA decay factor)
Pan paniscus (bonobo/pygmy chimpanzee) : SMG8 (SMG8 nonsense mediated mRNA decay factor)
Canis lupus familiaris (dog) : SMG8 (SMG8 nonsense mediated mRNA decay factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Smg8 (SMG8 nonsense mediated mRNA decay factor)
Sus scrofa (pig) : SMG8 (SMG8 nonsense mediated mRNA decay factor)
Chlorocebus sabaeus (African green monkey) : SMG8 (SMG8 nonsense mediated mRNA decay factor)
Heterocephalus glaber (naked mole-rat) : Smg8 (SMG8 nonsense mediated mRNA decay factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01074,379,224 - 74,388,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,379,226 - 74,388,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,711,834 - 75,721,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,347,928 - 75,356,944 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11075,362,295 - 75,371,338 (-)NCBI
Celera1070,802,973 - 70,812,587 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smg8
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306862
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.