Krtap29-1 (keratin associated like protein 29-1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Krtap29-1 (keratin associated like protein 29-1) Rattus norvegicus
Analyze
Symbol: Krtap29-1
Name: keratin associated like protein 29-1
RGD ID: 7702025
Description: Orthologous to human KRTAP29-1 (keratin associated like protein 29-1).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin associated protein 29-1; keratin-associated protein 29-1; keratin-associated protein 29-1-like; Krtap29; LOC102554016
RGD Orthologs
Human
Mouse
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,409,149 - 85,410,407 (-)NCBIGRCr8
mRatBN7.21084,908,983 - 84,910,002 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,908,983 - 84,910,002 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01087,890,266 - 87,891,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01087,676,583 - 87,677,602 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Krtap29-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,409,149 - 85,410,407 (-)NCBIGRCr8
mRatBN7.21084,908,983 - 84,910,002 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,908,983 - 84,910,002 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01087,890,266 - 87,891,285 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01087,676,583 - 87,677,602 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map10q31NCBI
KRTAP29-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,301,826 - 41,302,851 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,301,826 - 41,302,851 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,458,078 - 39,459,103 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q21.2NCBI
HuRef1735,221,609 - 35,222,634 (-)NCBIHuRef
CHM1_11739,693,419 - 39,694,444 (-)NCBICHM1_1
T2T-CHM13v2.01742,157,318 - 42,158,343 (-)NCBIT2T-CHM13v2.0
Krtap29-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,868,851 - 99,869,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,868,851 - 99,869,879 (-)EnsemblGRCm39 Ensembl
GRCm381199,978,025 - 99,979,100 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,978,025 - 99,979,053 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11DNCBI
cM Map1163.32NCBI
KRTAP29-1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,918,394 - 64,921,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,919,938 - 64,920,960 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607735,765,165 - 35,766,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krtap29-1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247952,237,513 - 2,238,577 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Krtap29-1
3 total Variants

1 to 10 of 80 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat

1 to 10 of 80 rows





RefSeq Transcripts XM_006247456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000104259   ⟹   ENSRNOP00000092691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1084,908,983 - 84,910,002 (-)Ensembl
RefSeq Acc Id: XM_039087847   ⟹   XP_038943775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81085,409,149 - 85,410,407 (-)NCBI
mRatBN7.21084,908,983 - 84,910,002 (-)NCBI
Protein RefSeqs XP_038943775 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092691.1
RefSeq Acc Id: XP_038943775   ⟸   XM_039087847
- UniProtKB: A0A0G2JVF7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092691   ⟸   ENSRNOT00000104259


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23266 BioCyc
Ensembl Genes ENSRNOG00000067188 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104259.1 UniProtKB/TrEMBL
NCBI Gene Krtap29-1 ENTREZGENE
PhenoGen Krtap29-1 PhenoGen
RatGTEx ENSRNOG00000067188 RatGTEx
UniProt A0A0G2JVF7 ENTREZGENE, UniProtKB/TrEMBL


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Krtap29-1  keratin associated like protein 29-1  Krtap29  keratin associated protein 29-1  Data merged from RGD:149736312 737654 PROVISIONAL
2021-11-09 Krtap29-1  keratin associated like protein 29-1  Krtap29-1  keratin associated protein 29-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-08-09 Krtap29  keratin associated protein 29-1      Symbol and Name status set to provisional 45752 PROVISIONAL
2016-06-08 Krtap29-1  keratin associated protein 29-1  LOC102554016  keratin-associated protein 29-1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102554016  keratin-associated protein 29-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL