D10Rat106 Marker Search Result - Rat Genome Database

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Marker: D10Rat106

Symbol: D10Rat106
Previously known as: oxsts8652; R0074-B04; 
RGD ID: 38516
Expected Size: 235 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21081,714,630 - 81,714,865 (+)MAPPERmRatBN7.2
Rnor_6.01084,601,035 - 84,601,269NCBIRnor6.0
Rnor_5.01084,394,296 - 84,394,530UniSTSRnor5.0
RGSC_v3.41085,489,244 - 85,489,478UniSTSRGSC3.4
RGSC_v3.41085,489,220 - 85,489,479RGDRGSC3.4
RGSC_v3.11085,503,614 - 85,503,848RGD
Celera1080,476,601 - 80,476,835UniSTS
RH 3.4 Map10778.1RGD
RH 3.4 Map10778.1UniSTS
RH 2.0 Map10909.6RGD
SHRSP x BN Map1058.54RGD
FHH x ACI Map1066.94RGD
Cytogenetic Map10q31UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Bp71  
Genes:   Skap1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TGTGTAAACATCTGGTGTGGG
Reverse Primer CCATTGAATCGTGGCTCTTT
 
Template 
TAAACGAACAAGTAGACCAAGCTATGCATGCCTGCAGGTCGCACTCTAGAGGATCCCCCCCAAC
TAGCATAGACAACCCTGTCCCATTGAATCGTGGCTCTTTAATAAATAAAAAAAAACCCTTTGTA
GGAGGGTAGAGAGAGAGAGAGGACTACAACTGTGTTTTTCTCTTTAATCTCCTTTATTTCTAAG
CTGTTGTCCTNGGCAGGATCTTTCACTTTCAAGACATTCNCACACACACACACACACACACACA
CACNCACACACACACACACACCCCAGAGTGTGGTAGANGGTCCCACACCAGATGTTTACACAGG
C

Region

Nucleotide Sequences
GenBank Nucleotide AC136178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 286975 UniSTS
  326555 UniSTS