UniSTS:225862 Marker Search Result - Rat Genome Database

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Marker: UniSTS:225862

Symbol: UniSTS:225862
Previously known as: Hoxb6; 
RGD ID: 5081338
Expected Size: 162 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21081,267,204 - 81,267,366 (+)MAPPERmRatBN7.2
Rnor_6.01084,149,985 - 84,150,146NCBIRnor6.0
Rnor_5.01083,952,717 - 83,952,878UniSTSRnor5.0
RGSC_v3.41085,033,349 - 85,033,510UniSTSRGSC3.4
Celera1080,033,368 - 80,033,529UniSTS
Cytogenetic Map10q31UniSTS
Is Marker For: Genes:   Hoxb6  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer AAAGACTCCCTGACCCCAGAC
Reverse Primer TCCCGAGCTAAGACAAGACTACAA
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
10395317Hoxb5oshomeobox B5 and homeobox B6, opposite strand108125688081272747Rat
1562142Hoxb6homeo box B6108125872681267458Rat
1310780Hoxb3homeo box B3108125873981314134Rat
RefSeq Transcripts XM_003752371.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_573182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 87 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat

1 to 10 of 87 rows


Database
Acc Id
Source(s)
NCBI Gene 497986 UniSTS