Elob-ps4 (elongin B, pseudogene 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Elob-ps4 (elongin B, pseudogene 4) Rattus norvegicus
Analyze
Symbol: Elob-ps4
Name: elongin B, pseudogene 4 (Ensembl:elongin B, pseduogene 4)
RGD ID: 1304870
Description: Predicted to be involved in transcription elongation by RNA polymerase II. Predicted to be part of VCB complex and elongin complex.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: elongin-B-like; LOC287912; RGD1304870; similar to Tceb2 protein
Related Functional Gene: Elob  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,247,082 - 74,247,436 (+)NCBIGRCr8
mRatBN7.21073,749,869 - 73,750,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,747,952 - 73,750,403 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,365,078 - 78,365,432 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,870,000 - 77,870,354 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,333,167 - 73,333,521 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,278,747 - 76,281,411 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01073,828,602 - 73,829,155 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,395,994 - 77,396,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,410,363 - 77,418,392 (+)NCBI
Celera1072,653,613 - 72,656,405 (+)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elob-ps4Rattranscription elongation by RNA polymerase II involved_inIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Elob-ps4Ratelongin complex part_ofIBAFB:FBgn0023212|MGI:1914923|PANTHER:PTN000997498|UniProtKB:Q153701600115GO_REF:0000033GO_CentralGO_REF:0000033
Elob-ps4Ratelongin complex part_ofIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002
Elob-ps4RatVCB complex part_ofIBAPANTHER:PTN000997498|RGD:6212001600115GO_REF:0000033GO_CentralGO_REF:0000033
Elob-ps4RatVCB complex part_ofIEAInterPro:IPR0390491600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


.

.
Variants in Elob-ps4
1 total Variants

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:39
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000051823
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat

1 to 10 of 84 rows






Ensembl Acc Id: ENSRNOT00000095697   ⟹   ENSRNOP00000093161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,747,952 - 73,750,403 (+)Ensembl
RefSeq Acc Id: XM_039087838   ⟹   XP_038943766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21073,749,685 - 73,750,358 (+)NCBI
Ensembl Protein ENSRNOP00000093161.1
RefSeq Acc Id: XP_038943766   ⟸   XM_039087838
Ensembl Acc Id: ENSRNOP00000093161   ⟸   ENSRNOT00000095697
Ubiquitin-like


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23703 BioCyc
Ensembl Genes ENSRNOG00000067144 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000095697.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro ELOB UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene 287912 ENTREZGENE
PANTHER ELONGIN B-LIKE UniProtKB/TrEMBL
  PTHR13248 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PhenoGen Elob-ps4 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067144 RatGTEx
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8I6AJR9_RAT UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-01-24 Elob-ps4  elongin B, pseudogene 4  Elob-ps4  elongin B, pseduogene 4  Name changed 629549 APPROVED
2022-06-10 Elob-ps4  elongin B, pseduogene 4  RGD1304870  similar to Tceb2 protein  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1304870  similar to Tceb2 protein  RGD1304870  similar to Tceb2 protein  Data merged from RGD:149736319 737654 PROVISIONAL
2021-08-09 RGD1304870  similar to Tceb2 protein      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1304870  similar to Tceb2 protein   RGD1304870_predicted  similar to Tceb2 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1304870_predicted  similar to Tceb2 protein (predicted)  LOC287912_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC287912_predicted  similar to Tceb2 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL