Atp6v0a1 (ATPase H+ transporting V0 subunit a1) - Rat Genome Database

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Gene: Atp6v0a1 (ATPase H+ transporting V0 subunit a1) Rattus norvegicus
Analyze
Symbol: Atp6v0a1
Name: ATPase H+ transporting V0 subunit a1
RGD ID: 68405
Description: Predicted to enable ATPase binding activity. Predicted to be involved in regulation of macroautophagy and vacuolar acidification. Predicted to act upstream of or within toxin transport. Located in synaptic vesicle. Is integral component of synaptic vesicle membrane. Orthologous to human ATP6V0A1 (ATPase H+ transporting V0 subunit a1); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Atp6n1; Atp6n1a; ATPase H+ transporting lysosomal (vacuolar proton pump) noncatalytic accessory protein 1 (110/160 kDa); ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD); ATPase, H+ transporting, lysosomal (vacuolar proton pump) noncatalytic accessory protein 1 (110/160 kDa); ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a; ATPase, H+ transporting, lysosomal V0 subunit a; ATPase, H+ transporting, lysosomal V0 subunit a isoform 1; ATPase, H+ transporting, lysosomal V0 subunit A1; clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit; V-ATPase 116 kDa; V-ATPase 116 kDa subunit a 1; V-ATPase 116 kDa subunit a1; v-H+ATPase subunit a1; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 1; V-type proton ATPase 116 kDa subunit a isoform 1; V-type proton ATPase 116 kDa subunit a1; vacuolar adenosine triphosphatase subunit Ac116; vacuolar proton pump subunit 1; vacuolar proton translocating ATPase 116 kDa subunit a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21085,935,802 - 85,989,901 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)Ensembl
Rnor_6.01088,914,264 - 88,967,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,914,276 - 88,967,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,710,520 - 88,766,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,948,286 - 90,072,304 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11089,964,972 - 90,086,670 (+)NCBI
Celera1084,654,189 - 84,707,639 (+)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
C60 fullerene  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
disodium selenite  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
methamphetamine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
selenomethionine  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
sulindac sulfide  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
thapsigargin  (ISO)
trichloroethene  (EXP)
Triptolide  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
vinclozolin  (EXP)
Yessotoxin  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10722719   PMID:12672822   PMID:15935991   PMID:16621796   PMID:17228368   PMID:17360703   PMID:19056867   PMID:19549681   PMID:20147366   PMID:21700703   PMID:21795392   PMID:22871113  
PMID:22982048   PMID:23376485   PMID:23533145   PMID:23716698   PMID:24165939   PMID:25002582   PMID:27323115   PMID:29476059   PMID:32357304  


Genomics

Comparative Map Data
Atp6v0a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21085,935,802 - 85,989,901 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)Ensembl
Rnor_6.01088,914,264 - 88,967,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,914,276 - 88,967,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,710,520 - 88,766,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,948,286 - 90,072,304 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11089,964,972 - 90,086,670 (+)NCBI
Celera1084,654,189 - 84,707,639 (+)NCBICelera
Cytogenetic Map10q31NCBI
ATP6V0A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,458,878 - 42,522,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1742,458,844 - 42,522,582 (+)EnsemblGRCh38hg38GRCh38
GRCh371740,610,896 - 40,674,597 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,864,388 - 37,928,123 (+)NCBINCBI36hg18NCBI36
Celera1737,266,849 - 37,330,552 (+)NCBI
Cytogenetic Map17q21.2NCBI
HuRef1736,375,995 - 36,439,547 (+)NCBIHuRef
CHM1_11740,846,745 - 40,910,459 (+)NCBICHM1_1
Atp6v0a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,899,262 - 100,954,545 (+)NCBIGRCm39mm39
GRCm39 Ensembl11100,900,278 - 100,954,545 (+)Ensembl
GRCm3811101,009,422 - 101,063,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,009,452 - 101,063,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711100,870,769 - 100,925,028 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611100,825,545 - 100,879,804 (+)NCBImm8
Celera11112,305,579 - 112,359,857 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.04NCBI
Atp6v0a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,396,287 - 16,444,932 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,396,287 - 16,442,596 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11715,017,692 - 15,082,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01714,793,717 - 14,857,706 (-)NCBIMhudiblu_PPA_v0panPan3
ATP6V0A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,422,144 - 20,486,459 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,423,373 - 20,484,328 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,883,979 - 19,948,472 (-)NCBI
ROS_Cfam_1.0921,141,094 - 21,205,623 (-)NCBI
ROS_Cfam_1.0 Ensembl921,141,096 - 21,205,565 (-)Ensembl
UMICH_Zoey_3.1919,926,898 - 19,991,407 (-)NCBI
UNSW_CanFamBas_1.0920,192,140 - 20,256,660 (-)NCBI
UU_Cfam_GSD_1.0920,296,209 - 20,360,734 (-)NCBI
Atp6v0a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,778,545 - 19,839,467 (-)NCBI
SpeTri2.0NW_00493649017,235,661 - 17,296,589 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,288,409 - 20,344,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,288,409 - 20,344,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,501,313 - 20,557,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,754,523 - 63,818,537 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,753,521 - 63,816,551 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607734,550,133 - 34,614,224 (-)NCBIVero_WHO_p1.0
Atp6v0a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247951,561,104 - 1,607,693 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21085,989,734 - 85,989,896 (+)MAPPERmRatBN7.2
Rnor_6.01088,967,570 - 88,967,731NCBIRnor6.0
Rnor_5.01088,766,066 - 88,766,227UniSTSRnor5.0
RGSC_v3.41090,072,138 - 90,072,299UniSTSRGSC3.4
Celera1084,707,473 - 84,707,634UniSTS
RH 3.4 Map10878.1UniSTS
Cytogenetic Map10q32.1UniSTS
RH132477  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,354,774 - 86,354,960 (+)MAPPERmRatBN7.2
Rnor_6.01089,332,124 - 89,332,309NCBIRnor6.0
Rnor_5.01089,130,148 - 89,130,333UniSTSRnor5.0
RGSC_v3.41090,016,481 - 90,016,666UniSTSRGSC3.4
Celera1085,072,259 - 85,072,444UniSTS
RH 3.4 Map10878.1UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS
RH144379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,353,468 - 86,353,616 (+)MAPPERmRatBN7.2
Rnor_6.01089,330,818 - 89,330,965NCBIRnor6.0
Rnor_5.01089,128,842 - 89,128,989UniSTSRnor5.0
RGSC_v3.41090,015,175 - 90,015,322UniSTSRGSC3.4
Celera1085,070,953 - 85,071,100UniSTS
RH 3.4 Map10837.2UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS
BF412836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21085,960,708 - 85,960,821 (+)MAPPERmRatBN7.2
Rnor_6.01088,939,133 - 88,939,245NCBIRnor6.0
Rnor_5.01088,737,629 - 88,737,741UniSTSRnor5.0
Celera1084,678,483 - 84,678,595UniSTS
Cytogenetic Map10q32.1UniSTS
RH125015  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21086,347,284 - 86,347,365 (+)MAPPERmRatBN7.2
Rnor_6.01089,324,634 - 89,324,714NCBIRnor6.0
Rnor_5.01089,122,658 - 89,122,738UniSTSRnor5.0
RGSC_v3.41090,008,991 - 90,009,071UniSTSRGSC3.4
Celera1085,064,769 - 85,064,849UniSTS
Cytogenetic Map10q32UniSTS
Cytogenetic Map10q32.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:138
Interacting mature miRNAs:171
Transcripts:ENSRNOT00000055238
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 40 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB586356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB770675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB787072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO560122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ286424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M58758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000055238   ⟹   ENSRNOP00000052113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1088,914,295 - 88,967,748 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087076   ⟹   ENSRNOP00000071954
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)Ensembl
Rnor_6.0 Ensembl1088,914,276 - 88,967,732 (+)Ensembl
RefSeq Acc Id: NM_031604   ⟹   NP_113792
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,854 - 85,989,901 (+)NCBI
Rnor_6.01088,914,276 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
RGSC_v3.41089,948,286 - 90,072,304 (+)RGD
Celera1084,654,189 - 84,707,639 (+)RGD
Sequence:
RefSeq Acc Id: XM_006247295   ⟹   XP_006247357
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247296   ⟹   XP_006247358
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247297   ⟹   XP_006247359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Rnor_5.01088,710,520 - 88,766,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597194   ⟹   XP_017452683
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597195   ⟹   XP_017452684
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,268 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597196   ⟹   XP_017452685
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597197   ⟹   XP_017452686
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597199   ⟹   XP_017452688
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,268 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597200   ⟹   XP_017452689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
Rnor_6.01088,914,264 - 88,967,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039085799   ⟹   XP_038941727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,936,251 - 85,989,901 (+)NCBI
RefSeq Acc Id: XM_039085800   ⟹   XP_038941728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,936,379 - 85,989,901 (+)NCBI
RefSeq Acc Id: XM_039085801   ⟹   XP_038941729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
RefSeq Acc Id: XR_005489781
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,989,901 (+)NCBI
RefSeq Acc Id: XR_005489782
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21085,935,802 - 85,982,011 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_113792   ⟸   NM_031604
- UniProtKB: P25286 (UniProtKB/Swiss-Prot),   Q2I6B5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247357   ⟸   XM_006247295
- Peptide Label: isoform X4
- UniProtKB: Q2I6B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247358   ⟸   XM_006247296
- Peptide Label: isoform X5
- UniProtKB: Q2I6B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247359   ⟸   XM_006247297
- Peptide Label: isoform X6
- UniProtKB: Q2I6B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452683   ⟸   XM_017597194
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452685   ⟸   XM_017597196
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452689   ⟸   XM_017597200
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017452686   ⟸   XM_017597197
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017452684   ⟸   XM_017597195
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452688   ⟸   XM_017597199
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000052113   ⟸   ENSRNOT00000055238
RefSeq Acc Id: ENSRNOP00000071954   ⟸   ENSRNOT00000087076
RefSeq Acc Id: XP_038941729   ⟸   XM_039085801
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038941727   ⟸   XM_039085799
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941728   ⟸   XM_039085800
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25286-F1-model_v2 AlphaFold P25286 1-838 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697738
Promoter ID:EPDNEW_R8262
Type:initiation region
Name:Atp6v0a1_1
Description:ATPase H+ transporting V0 subunit a1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01088,914,296 - 88,914,356EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68405 AgrOrtholog
BioCyc Gene G2FUF-23205 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000036814 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000052113 UniProtKB/TrEMBL
  ENSRNOP00000071954 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055238 UniProtKB/TrEMBL
  ENSRNOT00000087076 ENTREZGENE, UniProtKB/TrEMBL
InterPro V-ATPase_116kDa_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29757 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 29757 ENTREZGENE
PANTHER PTHR11629 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v0a1 PhenoGen
PIRSF ATP6V0A1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205492
UniProt P25286 ENTREZGENE
  Q2I6B2 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B3 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B4 ENTREZGENE, UniProtKB/TrEMBL
  Q2I6B5 ENTREZGENE, UniProtKB/TrEMBL
  VPP1_RAT UniProtKB/Swiss-Prot
UniProt Secondary D4ACY5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp6v0a1  ATPase H+ transporting V0 subunit a1  Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit A1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit A1    ATPase, H+ transporting, lysosomal V0 subunit a isoform 1  Name updated 1299863 APPROVED
2004-09-10 Atp6v0a1  ATPase, H+ transporting, lysosomal V0 subunit a isoform 1  Atp6n1a  ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a  Symbol and Name updated 1299863 APPROVED
2002-06-10 Atp6n1a  ATPase, H+ transporting, lysosomal noncatalytic accessory protein 1a      Name updated 70584 APPROVED
2002-02-27 Atp6n1a  ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD)      Symbol and Name updated to reflect Human and Mouse nomenclature 70292 APPROVED

RGD Curation Notes
Note Type Note Reference