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Gene: Ccdc47 (coiled-coil domain containing 47) Rattus norvegicus
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Symbol: Ccdc47
Name: coiled-coil domain containing 47
RGD ID: 1308813
Description: Predicted to have calcium ion binding activity. Predicted to be involved in several processes, including ER overload response; endoplasmic reticulum calcium ion homeostasis; and ubiquitin-dependent ERAD pathway. Predicted to localize to rough endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47); INTERACTS WITH acrylamide; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: coiled-coil domain-containing protein 47; LOC303606; RGD1308813; similar to adipocyte-specific protein 4
Orthologs:
Homo sapiens (human) : CCDC47 (coiled-coil domain containing 47)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc47 (coiled-coil domain containing 47)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc47 (coiled-coil domain containing 47)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC47 (coiled-coil domain containing 47)
Canis lupus familiaris (dog) : CCDC47 (coiled-coil domain containing 47)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc47 (coiled-coil domain containing 47)
Sus scrofa (pig) : CCDC47 (coiled-coil domain containing 47)
Chlorocebus sabaeus (African green monkey) : CCDC47 (coiled-coil domain containing 47)
Heterocephalus glaber (naked mole-rat) : Ccdc47 (coiled-coil domain containing 47)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01094,388,425 - 94,406,949 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1094,388,430 - 94,406,949 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01094,139,727 - 94,158,251 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41095,593,531 - 95,612,057 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11095,607,905 - 95,626,427 (-)NCBI
Celera1089,806,277 - 89,824,762 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc47
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308813
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.