Dnah9 (dynein, axonemal, heavy chain 9) - Rat Genome Database

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Gene: Dnah9 (dynein, axonemal, heavy chain 9) Rattus norvegicus
Analyze
Symbol: Dnah9
Name: dynein, axonemal, heavy chain 9
RGD ID: 621799
Description: Predicted to enable dynein intermediate chain binding activity; dynein light intermediate chain binding activity; and minus-end-directed microtubule motor activity. Predicted to be involved in cilium movement. Predicted to act upstream of or within cerebrospinal fluid circulation; establishment of localization in cell; and mucociliary clearance. Predicted to be located in 9+2 motile cilium; distal portion of axoneme; and extracellular region. Predicted to be part of outer dynein arm. Predicted to be active in axoneme and motile cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 40. Orthologous to human DNAH9 (dynein axonemal heavy chain 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein heavy chain 9, axonemal; dynein, axonemal, heavy polypeptide 9; LOC100363013; LOC287399; LOC363711; LOC691910; mCG140381-like; similar to Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21050,496,174 - 50,864,909 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1050,497,688 - 50,864,949 (-)Ensembl
Rnor_6.01052,351,226 - 52,711,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1052,351,192 - 52,710,862 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01052,101,007 - 52,465,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41052,704,651 - 52,857,689 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11052,718,277 - 52,726,147 (-)NCBI
Celera1049,698,523 - 50,053,917 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification and molecular evolution of new dynein-like protein sequences in rat brain. Tanaka Y, etal., J Cell Sci 1995 May;108 ( Pt 5):1883-93.
Additional References at PubMed
PMID:11104725   PMID:11839535   PMID:15750039   PMID:18950741   PMID:23849778   PMID:26909801   PMID:27353389   PMID:30471717   PMID:31178125  


Genomics

Comparative Map Data
Dnah9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21050,496,174 - 50,864,909 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1050,497,688 - 50,864,949 (-)Ensembl
Rnor_6.01052,351,226 - 52,711,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1052,351,192 - 52,710,862 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01052,101,007 - 52,465,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41052,704,651 - 52,857,689 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11052,718,277 - 52,726,147 (-)NCBI
Celera1049,698,523 - 50,053,917 (-)NCBICelera
Cytogenetic Map10q24NCBI
DNAH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381711,598,470 - 11,969,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1711,598,470 - 11,969,748 (+)EnsemblGRCh38hg38GRCh38
GRCh371711,501,787 - 11,873,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361711,442,473 - 11,813,790 (+)NCBINCBI36hg18NCBI36
Celera1711,532,499 - 11,903,633 (+)NCBI
Cytogenetic Map17p12NCBI
HuRef1711,403,416 - 11,773,976 (+)NCBIHuRef
CHM1_11711,510,987 - 11,882,195 (+)NCBICHM1_1
T2T-CHM13v2.01711,506,869 - 11,877,746 (+)NCBI
Dnah9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,722,150 - 66,059,379 (-)NCBIGRCm39mm39
GRCm39 Ensembl1165,722,108 - 66,059,377 (-)Ensembl
GRCm381165,831,324 - 66,168,581 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,831,282 - 66,168,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv371165,644,826 - 65,982,053 (-)NCBIGRCm37mm9NCBIm37
MGSCv361165,647,519 - 65,984,746 (-)NCBImm8
Celera1172,766,026 - 73,104,526 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.53NCBI
Dnah9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554675,357,500 - 5,677,755 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554675,357,500 - 5,677,144 (-)NCBIChiLan1.0ChiLan1.0
DNAH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11744,422,857 - 44,796,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1744,422,928 - 44,796,983 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01739,673,338 - 40,047,090 (-)NCBIMhudiblu_PPA_v0panPan3
DNAH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1535,730,394 - 36,060,154 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl535,730,394 - 36,058,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,868,460 - 36,197,847 (+)NCBI
ROS_Cfam_1.0535,837,559 - 36,167,438 (+)NCBI
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)Ensembl
UMICH_Zoey_3.1535,804,266 - 36,134,631 (+)NCBI
UNSW_CanFamBas_1.0535,758,579 - 36,088,337 (+)NCBI
UU_Cfam_GSD_1.0535,942,526 - 36,272,584 (+)NCBI
Dnah9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,864,603 - 51,196,370 (+)NCBI
SpeTri2.0NW_0049365954,338,831 - 4,671,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1256,045,381 - 56,358,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11256,045,079 - 56,366,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21259,166,522 - 59,264,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,947,254 - 11,316,414 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1610,948,014 - 11,317,291 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660599,941,269 - 10,314,120 (-)NCBIVero_WHO_p1.0
Dnah9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478614,031,718 - 14,411,533 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462478614,031,785 - 14,411,469 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D10Rat102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21050,509,096 - 50,509,331 (+)MAPPERmRatBN7.2
Rnor_6.01052,362,558 - 52,362,792NCBIRnor6.0
Rnor_5.01052,114,310 - 52,114,544UniSTSRnor5.0
RGSC_v3.41052,505,308 - 52,505,542UniSTSRGSC3.4
RGSC_v3.41052,505,307 - 52,505,542RGDRGSC3.4
RGSC_v3.11052,518,931 - 52,519,165RGD
Celera1049,709,822 - 49,710,056UniSTS
RH 3.4 Map10579.3RGD
RH 3.4 Map10579.3UniSTS
RH 2.0 Map10562.7RGD
SHRSP x BN Map1043.0699RGD
FHH x ACI Map1040.39RGD
Cytogenetic Map10q24UniSTS
RH139963  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21050,498,791 - 50,499,001 (+)MAPPERmRatBN7.2
Rnor_6.01052,352,256 - 52,352,465NCBIRnor6.0
Rnor_5.01052,104,008 - 52,104,217UniSTSRnor5.0
RGSC_v3.41052,515,635 - 52,515,844UniSTSRGSC3.4
Celera1049,699,553 - 49,699,762UniSTS
RH 3.4 Map10580.3UniSTS
Cytogenetic Map10q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:59
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000005583
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 8
Low 12 10 12 10 64 9 29 3
Below cutoff 3 12 23 9 7 9 8 8 6 26 10 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_002724507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002727722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide D26500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005583   ⟹   ENSRNOP00000005583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1050,497,700 - 50,864,949 (-)Ensembl
Rnor_6.0 Ensembl1052,351,192 - 52,710,862 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111079   ⟹   ENSRNOP00000088487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1050,497,688 - 50,864,949 (-)Ensembl
RefSeq Acc Id: XM_002727722   ⟹   XP_002727768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,496,174 - 50,864,850 (-)NCBI
Rnor_6.01052,351,226 - 52,711,173 (-)NCBI
Rnor_5.01052,101,007 - 52,465,444 (-)NCBI
RGSC_v3.41052,704,651 - 52,857,689 (-)RGD
Sequence:
RefSeq Acc Id: XM_017597645   ⟹   XP_017453134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,512,155 - 50,864,909 (-)NCBI
Rnor_6.01052,366,334 - 52,711,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087292   ⟹   XP_038943220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,864,908 (-)NCBI
RefSeq Acc Id: XM_039087293   ⟹   XP_038943221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,864,908 (-)NCBI
RefSeq Acc Id: XM_039087294   ⟹   XP_038943222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,864,908 (-)NCBI
RefSeq Acc Id: XM_039087295   ⟹   XP_038943223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,852,045 (-)NCBI
RefSeq Acc Id: XM_039087296   ⟹   XP_038943224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,513,454 - 50,864,909 (-)NCBI
RefSeq Acc Id: XM_039087297   ⟹   XP_038943225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,516,914 - 50,864,909 (-)NCBI
RefSeq Acc Id: XM_039087298   ⟹   XP_038943226
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,538,248 - 50,864,909 (-)NCBI
RefSeq Acc Id: XM_039087299   ⟹   XP_038943227
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,812,516 (-)NCBI
RefSeq Acc Id: XM_039087300   ⟹   XP_038943228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,745,705 (-)NCBI
RefSeq Acc Id: XM_039087301   ⟹   XP_038943229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,685,230 - 50,864,909 (-)NCBI
RefSeq Acc Id: XM_039087302   ⟹   XP_038943230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,701,570 (-)NCBI
RefSeq Acc Id: XM_039087303   ⟹   XP_038943231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,497,923 - 50,694,538 (-)NCBI
RefSeq Acc Id: XR_005490291
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,513,257 - 50,864,909 (-)NCBI
RefSeq Acc Id: XR_005490292
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,513,260 - 50,864,909 (-)NCBI
RefSeq Acc Id: XR_005490293
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,513,454 - 50,864,909 (-)NCBI
RefSeq Acc Id: XR_005490294
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21050,541,980 - 50,864,909 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_002727768   ⟸   XM_002727722
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453134   ⟸   XM_017597645
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000005583   ⟸   ENSRNOT00000005583
RefSeq Acc Id: XP_038943222   ⟸   XM_039087294
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038943220   ⟸   XM_039087292
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038943221   ⟸   XM_039087293
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943223   ⟸   XM_039087295
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038943227   ⟸   XM_039087299
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038943228   ⟸   XM_039087300
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038943230   ⟸   XM_039087302
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038943231   ⟸   XM_039087303
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038943224   ⟸   XM_039087296
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038943225   ⟸   XM_039087297
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038943226   ⟸   XM_039087298
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038943229   ⟸   XM_039087301
- Peptide Label: isoform X12
RefSeq Acc Id: ENSRNOP00000088487   ⟸   ENSRNOT00000111079
Protein Domains
AAA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
10 52354365 52354366 T C snv SR/JrHsd (MCW), SR/JrHsd (RGD), SS/JrHsdMcwi (2019), SR/JrHsd (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LH/MavRrrc (RGD), SS/JrHsdMcwi (MCW), SS/Jr (RGD), SS/JrHsdMcwi (RGD), LL/MavRrrc (RGD)
10 52367462 52367463 G A snv GK/Ox (RGD), MHS/Gib (RGD), GK/FarMcwi (2019), MNS/Gib (RGD), CDR, BBDP/Wor (RGD)
10 52388650 52388651 G A snv GK/FarMcwi (2019), GK/Ox (RGD)
10 52414279 52414280 T C snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), CDR, SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019)
10 52417059 52417060 A C snv ACI/N (MCW)
10 52518444 52518445 G A snv ACI/EurMcwi (MCW), ACI/EurMcwi (2019), ACI/EurMcwi (RGD), DA/OlaHsd (2019), ACI/N (2020)
10 52548617 52548618 C T snv ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW)
10 52553316 52553317 T C snv WKY/N (MCW), MR/N (MCW), M520/N (MCW), F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), WN/N (MCW)
10 52553416 52553417 A G snv WKY/N (MCW), MR/N (MCW), M520/N (MCW), F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), WN/N (MCW)
10 52711067 52711068 G A snv CDR, LN/MavRrrc (RGD), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), WN/N (MCW), ACI/EurMcwi (RGD), MHS/Gib (RGD), WAG/Rij (RGD), WKY/Gcrc (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), WKY/NCrl (RGD), ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (RGD), GK/Ox (RGD), LEW/NCrlBR (RGD), CDS


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
10 52106117 52106118 T C snv HTX/Kyo (KyushuU), SS/JrHsdMcwi (MCW), LL/MavRrrc (KNAW), SR/JrHsd (MCW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), LH/MavRrrc (KNAW)
10 52140402 52140403 G A snv GK/Ox (KNAW), IS/Kyo (KyushuU), BUF/MNa (KyushuU), IS-Tlk/Kyo (KyushuU)
10 52166031 52166032 T C snv SR/JrHsd (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW)
10 52172137 52172138 A T snv DOB/Oda (KyushuU)
10 52206074 52206075 C G snv DOB/Oda (KyushuU)
10 52271398 52271399 G A snv ACI/EurMcwi (KNAW), ACI/N (KNAW), ACI/EurMcwi (MCW), DA/BklArbNsi (KNAW)
10 52358572 52358573 A T snv KFRS3B/Kyo (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU)
10 52465326 52465327 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), WN/N (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), MR/N (KNAW), WAG/Rij (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BBDP/WorN (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), FHL/EurMcwi (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), M520/N (KNAW), MNS/Gib (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), SDLEF7/Barth (UDEL), IS/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
10 50500901 50500902 T C snv LL/MavRrrcAek (2020), SR/JrHsd (2020), SS/JrHsdMcwi (2019), LH/MavRrrcAek (2020)
10 50534036 50534037 G A snv GK/FarMcwi (2019)
10 50559484 50559485 T C snv HXB4/IpcvMcwi (2020), DA/OlaHsd (2019), BXH2/CubMcwi (2020), ACI/N (2020), ACI/EurMcwi (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020)
10 50666642 50666643 G A snv DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019)
10 50864744 50864745 G A snv LEXF4/Stm (2020), LE/Stm (2019), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB4/IpcvMcwi (2020), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), BUF/N (2020), ACI/N (2020), ACI/EurMcwi (2019), F344/Stm (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621799 AgrOrtholog
BioCyc Gene G2FUF-24701 BioCyc
Ensembl Genes ENSRNOG00000004171 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005583.8 UniProtKB/TrEMBL
  ENSRNOP00000088487 ENTREZGENE
  ENSRNOP00000088487.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005583.8 UniProtKB/TrEMBL
  ENSRNOT00000111079 ENTREZGENE
  ENSRNOT00000111079.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.710 UniProtKB/TrEMBL
  1.10.8.720 UniProtKB/TrEMBL
  1.20.140.100 UniProtKB/TrEMBL
  3.10.490.20 UniProtKB/TrEMBL
  3.20.180.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_6 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  AAA_lid_11_sf UniProtKB/TrEMBL
  DHC_D5 UniProtKB/TrEMBL
  DHC_fam UniProtKB/TrEMBL
  DNAH3_AAA_lid_1 UniProtKB/TrEMBL
  DNAH9 UniProtKB/TrEMBL
  Dynein_2_C UniProtKB/TrEMBL
  Dynein_2_N UniProtKB/TrEMBL
  Dynein_AAA1S UniProtKB/TrEMBL
  Dynein_AAA5_ext UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_C_barrel UniProtKB/TrEMBL
  Dynein_HC_stalk UniProtKB/TrEMBL
  Dynein_heavy_chain_D4_dom UniProtKB/TrEMBL
  Dynein_heavy_dom UniProtKB/TrEMBL
  Dynein_heavy_dom-1 UniProtKB/TrEMBL
  Dynein_heavy_dom-2 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 117251 ENTREZGENE
PANTHER PTHR10676 UniProtKB/TrEMBL
  PTHR10676:SF257 UniProtKB/TrEMBL
Pfam AAA_6 UniProtKB/TrEMBL
  AAA_8 UniProtKB/TrEMBL
  AAA_9 UniProtKB/TrEMBL
  AAA_lid_1 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  DHC_N1 UniProtKB/TrEMBL
  DHC_N2 UniProtKB/TrEMBL
  Dynein_AAA_lid UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_heavy UniProtKB/TrEMBL
  PF12777 UniProtKB/TrEMBL
PhenoGen Dnah9 PhenoGen
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6A869_RAT UniProtKB/TrEMBL
  F1LV07_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Dnah9  dynein, axonemal, heavy chain 9  LOC100363013  mCG140381-like  Data Merged 737654 PROVISIONAL
2015-07-29 Dnah9  dynein, axonemal, heavy chain 9  LOC363711  similar to Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9)  Data Merged 737654 PROVISIONAL
2013-08-01 Dnah9  dynein, axonemal, heavy chain 9  Dnah9  dynein, axonemal, heavy polypeptide 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-17 Dnah9  dynein, axonemal, heavy polypeptide 9  LOC691910  similar to Ciliary dynein heavy chain 9 (Axonemal beta dynein heavy chain 9)  Data Merged 737654 PROVISIONAL
2006-04-27 Dnah9  dynein, axonemal, heavy polypeptide 9  Dnah9_predicted  dynein, axonemal, heavy polypeptide 9 (predicted)  Data Merged 737654 APPROVED