Wnt9b (Wnt family member 9B) - Rat Genome Database

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Gene: Wnt9b (Wnt family member 9B) Rattus norvegicus
Analyze
Symbol: Wnt9b
Name: Wnt family member 9B
RGD ID: 1309574
Description: Predicted to enable co-receptor binding activity; cytokine activity; and frizzled binding activity. Predicted to be involved in Wnt signaling pathway; cell fate commitment; and negative regulation of stem cell population maintenance. Predicted to act upstream of or within several processes, including chordate embryonic development; kidney development; and reproductive structure development. Predicted to be active in extracellular space. Orthologous to human WNT9B (Wnt family member 9B); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; basal cell carcinoma pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-Tetrachlorodibenzofuran; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303586; protein Wnt-9b; wingless related MMTV integration site 9B; wingless-type MMTV integration site 9B; wingless-type MMTV integration site family, member 9B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21088,635,330 - 88,657,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,673,741 - 93,695,456 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01093,138,896 - 93,160,602 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01088,532,248 - 88,553,957 (-)NCBIRnor_WKY
Rnor_6.01091,785,892 - 91,808,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,552,384 - 91,574,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,880,020 - 92,901,641 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,897,918 - 92,916,111 (-)NCBI
Celera1087,334,808 - 87,356,461 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
9. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
Additional References at PubMed
PMID:16054034   PMID:16998816   PMID:19543268   PMID:20040500   PMID:20093360   PMID:21350016   PMID:23260145   PMID:25640183   PMID:28733458  


Genomics

Comparative Map Data
Wnt9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21088,635,330 - 88,657,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,673,741 - 93,695,456 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01093,138,896 - 93,160,602 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01088,532,248 - 88,553,957 (-)NCBIRnor_WKY
Rnor_6.01091,785,892 - 91,808,061 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,552,384 - 91,574,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,880,020 - 92,901,641 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,897,918 - 92,916,111 (-)NCBI
Celera1087,334,808 - 87,356,461 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
WNT9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381746,833,189 - 46,886,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1746,833,201 - 46,886,730 (+)EnsemblGRCh38hg38GRCh38
GRCh371744,928,949 - 44,964,104 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361742,283,967 - 42,309,436 (+)NCBINCBI36Build 36hg18NCBI36
Build 341742,283,966 - 42,309,436NCBI
Celera1741,378,455 - 41,403,922 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1740,307,364 - 40,332,821 (+)NCBIHuRef
CHM1_11744,993,095 - 45,018,563 (+)NCBICHM1_1
T2T-CHM13v2.01747,713,050 - 47,748,202 (+)NCBIT2T-CHM13v2.0
Wnt9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,618,188 - 103,666,098 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,618,190 - 103,640,647 (-)EnsemblGRCm39 Ensembl
GRCm3811103,727,362 - 103,775,272 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,727,364 - 103,749,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,588,677 - 103,611,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,543,453 - 103,565,911 (-)NCBIMGSCv36mm8
Celera11115,442,222 - 115,464,694 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.47NCBI
Wnt9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547810,816,405 - 10,841,416 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547810,816,405 - 10,841,416 (+)NCBIChiLan1.0ChiLan1.0
WNT9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11710,801,176 - 10,818,516 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01710,616,957 - 10,651,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
WNT9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,157,607 - 10,172,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl910,149,842 - 10,172,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,125,720 - 10,132,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0911,755,792 - 11,762,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl911,740,175 - 11,762,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1910,766,706 - 10,773,876 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,748,106 - 16,755,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,695,500 - 16,702,675 (-)NCBIUU_Cfam_GSD_1.0
Wnt9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,290,995 - 17,299,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,899,039 - 1,939,561 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365411,899,039 - 1,939,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,709,046 - 17,733,431 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,709,046 - 17,733,434 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21217,733,977 - 17,737,390 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11660,560,132 - 60,596,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1660,581,258 - 60,586,596 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607731,283,829 - 31,320,517 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248492,957,153 - 2,976,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248492,971,658 - 2,979,864 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wnt9b
147 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:640
Count of miRNA genes:267
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000005074
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)108402232193995963Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat

Markers in Region
RH127598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21088,635,483 - 88,635,688 (+)MAPPERmRatBN7.2
Rnor_6.01091,786,046 - 91,786,250NCBIRnor6.0
Rnor_5.01091,552,538 - 91,552,742UniSTSRnor5.0
RGSC_v3.41092,880,173 - 92,880,377UniSTSRGSC3.4
Celera1087,334,961 - 87,335,165UniSTS
RH 3.4 Map10913.5UniSTS
Cytogenetic Map10q32.1UniSTS
UniSTS:471334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21088,639,267 - 88,640,158 (+)MAPPERmRatBN7.2
Rnor_6.01091,789,832 - 91,790,721NCBIRnor6.0
Rnor_5.01091,556,324 - 91,557,213UniSTSRnor5.0
RGSC_v3.41092,883,959 - 92,884,848UniSTSRGSC3.4
Celera1087,338,743 - 87,339,632UniSTS
Cytogenetic Map10q32.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 12
Low 1 23 10 9 1 9 44 23 31 11
Below cutoff 2 20 39 24 18 24 8 10 30 9 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005074   ⟹   ENSRNOP00000005074
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1088,635,331 - 88,657,035 (-)Ensembl
Rnor_6.0 Ensembl1091,785,893 - 91,807,937 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078561   ⟹   ENSRNOP00000071955
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1091,787,848 - 91,797,317 (-)Ensembl
RefSeq Acc Id: NM_001107055   ⟹   NP_001100525
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21088,635,331 - 88,657,035 (-)NCBI
Rnor_6.01091,785,893 - 91,807,937 (-)NCBI
Rnor_5.01091,552,384 - 91,574,275 (-)NCBI
RGSC_v3.41092,880,020 - 92,901,641 (-)RGD
Celera1087,334,808 - 87,356,461 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247530   ⟹   XP_006247592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21088,635,330 - 88,652,114 (-)NCBI
Rnor_6.01091,785,892 - 91,799,409 (-)NCBI
Rnor_5.01091,552,384 - 91,574,275 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100525 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247592 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM06285 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100525   ⟸   NM_001107055
- Peptide Label: precursor
- UniProtKB: D3ZFS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247592   ⟸   XM_006247530
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K1R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005074   ⟸   ENSRNOT00000005074
RefSeq Acc Id: ENSRNOP00000071955   ⟸   ENSRNOT00000078561

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFS0-F1-model_v2 AlphaFold D3ZFS0 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309574 AgrOrtholog
BioCyc Gene G2FUF-23027 BioCyc
Ensembl Genes ENSRNOG00000003807 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005074 ENTREZGENE
  ENSRNOP00000005074.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005074 ENTREZGENE
  ENSRNOT00000005074.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro WNT9B UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_grthfactor_CS UniProtKB/TrEMBL
  Wnt_SF UniProtKB/TrEMBL
KEGG Report rno:303586 UniProtKB/TrEMBL
NCBI Gene 303586 ENTREZGENE
PANTHER PTHR12027:SF84 UniProtKB/TrEMBL
  Wnt UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PhenoGen Wnt9b PhenoGen
PRINTS WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A0G2K1R7 ENTREZGENE
  D3ZFS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Wnt9b  Wnt family member 9B  Wnt9b  wingless-type MMTV integration site family, member 9B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Wnt9b  wingless-type MMTV integration site family, member 9B  Wnt9b  wingless-type MMTV integration site 9B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Wnt9b  wingless-type MMTV integration site 9B  Wnt9b_predicted  wingless related MMTV integration site 9B (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wnt9b_predicted  wingless related MMTV integration site 9B (predicted)    wingless-type MMTV integration site 9B (predicted)  Name updated 1299863 APPROVED
2005-01-12 Wnt9b_predicted  wingless-type MMTV integration site 9B (predicted)      Symbol and Name status set to approved 70820 APPROVED