Fam171a2 (family with sequence similarity 171, member A2)

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Gene: Fam171a2 (family with sequence similarity 171, member A2) Rattus norvegicus

Analyze

Symbol:

Fam171a2

Name:

family with sequence similarity 171, member A2

RGD ID:

1307966

Description:

Predicted to be integral component of membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

hypothetical protein LOC100361389; LOC287736; RGD1307966; similar to hypothetical protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	87,393,888 - 87,404,051 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	87,394,007 - 87,404,053 (-)	Ensembl
Rnor_6.0	10	90,383,111 - 90,393,476 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,383,813 - 90,393,317 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	90,171,989 - 90,181,994 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	91,556,719 - 91,569,035 (-)	NCBI
Celera	10	86,102,591 - 86,112,889 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4-hydroxyphenyl retinamide (ISO)

amphetamine (EXP)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cisplatin (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

dicrotophos (ISO)

endosulfan (EXP)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

gentamycin (EXP)

glycitein (ISO)

glycitin (ISO)

GW 4064 (ISO)

Monobutylphthalate (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

paracetamol (ISO)

perfluorononanoic acid (ISO)

sodium arsenate (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

integral component of membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated


1.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Fam171a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	87,393,888 - 87,404,051 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	87,394,007 - 87,404,053 (-)	Ensembl
Rnor_6.0	10	90,383,111 - 90,393,476 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,383,813 - 90,393,317 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	90,171,989 - 90,181,994 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	10	91,556,719 - 91,569,035 (-)	NCBI
Celera	10	86,102,591 - 86,112,889 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

FAM171A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	44,353,215 - 44,363,853 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	44,353,215 - 44,363,853 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	42,430,583 - 42,441,221 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	39,786,627 - 39,797,861 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	17	39,140,726 - 39,150,869 (-)	NCBI
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	38,196,936 - 38,205,199 (-)	NCBI		HuRef
CHM1_1	17	42,666,777 - 42,676,899 (-)	NCBI		CHM1_1

Fam171a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	102,327,807 - 102,338,551 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	102,327,807 - 102,338,508 (-)	Ensembl
GRCm38	11	102,436,981 - 102,447,677 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	102,436,981 - 102,447,682 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	102,298,295 - 102,308,977 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	102,253,071 - 102,263,733 (-)	NCBI			mm8
Celera	11	114,147,141 - 114,157,809 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI

Fam171a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	17,372,032 - 17,376,329 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM171A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	13,193,821 - 13,211,438 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	17	13,035,571 - 13,046,220 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FAM171A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	19,067,160 - 19,077,571 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	19,067,277 - 19,076,512 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	18,456,954 - 18,466,557 (+)	NCBI
ROS_Cfam_1.0	9	19,761,577 - 19,771,184 (+)	NCBI
ROS_Cfam_1.0 Ensembl	9	19,761,179 - 19,771,148 (+)	Ensembl
UMICH_Zoey_3.1	9	18,615,393 - 18,624,991 (+)	NCBI
UNSW_CanFamBas_1.0	9	18,798,362 - 18,807,965 (+)	NCBI
UU_Cfam_GSD_1.0	9	18,942,624 - 18,952,232 (+)	NCBI

Fam171a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	18,384,996 - 18,394,175 (+)	NCBI
SpeTri2.0	NW_004936541	800,423 - 807,223 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM171A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	18,881,496 - 18,895,957 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	18,881,449 - 18,893,661 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	19,216,394 - 19,227,215 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM171A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	62,026,232 - 62,036,808 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666077	32,792,913 - 32,803,924 (+)	NCBI	Vero_WHO_p1.0

Fam171a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	697,151 - 703,792 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D10Wox31

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	87,393,632 - 87,393,760 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	90,383,063 - 90,383,190	NCBI	Rnor6.0
Rnor_5.0	10	90,171,594 - 90,171,721	UniSTS	Rnor5.0
RGSC_v3.4	10	91,542,095 - 91,542,222	UniSTS	RGSC3.4
Celera	10	86,102,543 - 86,102,670	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D10Wox30

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	87,393,676 - 87,393,763 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	90,383,107 - 90,383,193	NCBI	Rnor6.0
Rnor_5.0	10	90,171,638 - 90,171,724	UniSTS	Rnor5.0
RGSC_v3.4	10	91,542,139 - 91,542,225	UniSTS	RGSC3.4
Celera	10	86,102,587 - 86,102,673	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH128403

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	87,393,473 - 87,393,670 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	90,382,904 - 90,383,100	NCBI	Rnor6.0
Rnor_5.0	10	90,171,435 - 90,171,631	UniSTS	Rnor5.0
RGSC_v3.4	10	91,541,936 - 91,542,132	UniSTS	RGSC3.4
Celera	10	86,102,384 - 86,102,580	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D16195

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	87,393,599 - 87,393,772 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	90,383,030 - 90,383,202	NCBI	Rnor6.0
Rnor_5.0	10	90,171,561 - 90,171,733	UniSTS	Rnor5.0
RGSC_v3.4	10	91,542,062 - 91,542,234	UniSTS	RGSC3.4
Celera	10	86,102,510 - 86,102,682	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	80515287	91230079	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	82564856	92369470	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87307617	96121100	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	93
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000028563
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		26	6	6	2	6			74	22	31	6
Low	3	17	49	33	17	33	8	11		13	7	5	8
Below cutoff			2	2		2					3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_002727821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000028563 ⟹ ENSRNOP00000028563

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	87,394,007 - 87,404,053 (-)	Ensembl
Rnor_6.0 Ensembl	10	90,383,813 - 90,393,317 (-)	Ensembl

RefSeq Acc Id:

XM_002727821 ⟹ XP_002727867

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	87,393,888 - 87,404,050 (-)	NCBI
Rnor_6.0	10	90,383,111 - 90,393,475 (-)	NCBI
Rnor_5.0	10	90,171,989 - 90,181,994 (-)	NCBI

Sequence:

show sequence

CGCTCCGGGCGGAGACAATCGCGCCGAGCGGGCGCCGCAGCCGGAGCGGGAGCCCAACCCGGAG
CTGCACAGAGCGGTGCAGAGCTGGGGCTGAGCGGGGCCGGCCGAGCAGGGCCGGGCGGCAGCGA
TGGACCGCTAGGGCCCGGCCGAGCCCCGCGATGCCGCCGCCAAGTGGCCCCGGAGTCCTCGCGC
GGCTGCTGCCGCTGCTGGGGCTGCTGCTCGGCGGCGCCTCCCGGGCTCCCGGCAAGTCTCCGCC
GGAGCCCCCCAGCCCTCAGGAGATCCTGATCAAAGTACAGGTATATGTGAGCGGGGAGCTGGTG
CCCCTGGCCCGGGCCTCAGTAGACGTGTTTGGGAACCGCACTCTACTGGCTGCTGGTACCACGG
ACTCAGAGGGCGTGGCCACACTACCCCTCAGTTACCGCCTGGGTACCTGGGTGTTGGTCACTGC
TGCCCGTCCGGGTTTCCTCACCAACTCAGTGCCGTGGCGTGTTGACAAGCTGCCGTTGTATGCA
TCCGTCAGCCTCTACCTGCTCCCAGAGCGGCCAGCCACCCTCATCCTCTATGAGGACCTTGTGC
ACATCCTTCTAGGCTCTCCAGGTGCCCGCTCCCAGCCCTGGGTGCAGTTCCAGCGTAGAGCTGC
CCGCCTGCCCGTCAGCTCCACCTACAACCAGCTTTGGGCTTCGCTCACCCCTGCCAGCACCCAG
CAGGAAATGCGGGCTTTCCCTGCCTTCCTGGGGACTGAGGCCTCTAGCTCAGGCAATGGCTCCT
GGCTGGAGCTGATACCCCTGACTGCTGTGAGCGTACACCTGCTAACGGGCAATGGGACAGAGGT
GCCTCTCTCAGGCCCCATTCACCTGTCCCTGCCAGTACCCTCAGAGCCTCGTGCCCTTGCTGTG
GGCACCAGCATTCCAGCCTGGAGGTTTGACCCCAAGAGTGGGCTGTGGGTGCGAAATGGCACTG
GTGTGATTCGGAAGGAAGGCCGACAGCTCTACTGGACTTTTGTCTCCCCGCAGCTAGGGTACTG
GGTAGCTGCCATGGCCTCCCCTACATCTGGGCTGGTTACCATCACCTCAGGCATTCAGGACATC
GGCACGTACCACACAATCTTCCTGTTGACCATCCTGGCAGCCCTAGCCCTGCTGGTTCTCATTC
TGCTGTGTCTTCTGATCTACTACTGCCGACGACGCTGCTTGAAACCAAGACAACAGCACCGCAA
GCTGCAGCTCTCCGGCCCCTCGGACAACAAACGAGATCAGGCTACGTCGATGTCTCAACTCCAT
CTTATCTGCGGGGGACCCCTGGAGCCTACGTCGTCGGGAGACCCCGAGGCCCCTCCCCCAGGCT
CCCTACACTCGGCCTTCTCCAGCTCCCGAGACTTAGCATCCTCCCGGGATGACTTCTTCCGTGC
CAAACCGCGATCCGCCAGTCGACCAGCCGCCGAGCCTCCTGGTGCCCGCAGCGTTGAAGGTGCC
GGGCTTAAGGGCGCCCGCTCCGTCGAGGGTCCCGGCGTGCTGGAGCCCAGCCTGGAAGAATACC
GGCGGGGTCCAGCGGGAGCCGCTGCCTTCCTGCATGAGGCCCCCTCGCCGCCGCCGTCCTTCGA
CCATTATCTGGGCCACAAGGGGGCGGCCGAGAGCAAGACCCCCGACTTTCTGCTGTCACAGTCG
GTGGACCAGTTGGCGCGGCCGCCGTCCCTCAGCCAGCCCGGCCAGCTCATTTTCTGCGGTTCCA
TCGACCACCTCAAGGACAACGTGTACCGCAATGTCATGCCCACCCTGGTCATCCCCGCACACTA
TGTGCGCCTGGGCGGAGAGGCGGGCGCCGCGGGAGTGGGCGACGAGGCCACCCCGCCGGAGGGC
TCGGCCGCCGGCCCCGCGCGCCCCTTCCCTCAACCTGATCCCCAGCGCCCGCTGATACAGGGCC
ACGCAGGTGCGGGAGGCGACGGCGGTGGCGGCGAGGGCTGGGGCGGCGGGCGCTCCGCACCGGT
CAGCGGTTCGGTCACCATTCCGGTGCTGTTCAACGAGTCCACCATGGCGCAGCTCAACGGCGAG
CTGCAGGCTCTGACCGAGAAGAAGCTGCTGGAACTGGGCGTGAAGCCTCACCCGCGCGCCTGGT
TCGTGTCCCTGGACGGACGTTCCAACTCGCAAGTGCGCCACTCCTACATCGACCTGCAGGCGGG
CGGCGGCGGTCGCAGCACAGATGCCAGCCTGGACTCAGGCGTCGACGTGCACGAGGCTCGACCT
GCGCGCCGCCGGCCCCCGAGGGAGGAGCGGGAGCGCGCGCAGCCACCCGCGCCGCCGCCGCCCG
CGCCCCCGCGCCTGGCGCTCAGCGAAGACACAGAGCCCAGCAGCAGTGAGAGCCGCACAGGCCT
CTGCTCGCCAGAGGACAACTCGCTAACGCCCCTGCTGGACGAGGTGGTGGCACCCGAAGGCCGG
GCAGCCACAGTACCCAGGGGTCGGGGCCGCAGCCGTGGGGACAGTTCCCGCAGTAGCGCCAGTG
AGCTGCGGCGCGACTCGCTCACCAGCCCCGAGGACGAGCTAGGGGCGGAGGTGGGTGATGAGGC
TGGCGACAAAAAGAGCCCGTGGCAGCGGCGGGAGGAGCGGCCGCTAATGGTGTTCAATGTCAAG
TAGTGCGGCCCGGGGGTCGCCCACCGCCCCTGCCGCCAGTGCAGATTCCCAGGGTGCGCGCCCC
GGGATGCTGCAGCAGAGGGGCATACGCTCTTAGCCCGGAGAAGAGCTCATGGGTCAGCTGAGCT
CATCTGTGGTTTGTGCTGGGGGAGTGTCTTGGGAAGGGACCCTGGATTGGCCTCTAAGCAGAGG
GAGGTGGGAGGGACCCGGTCCCCTAAGGGAGGGGCTGGGGAGGAGGGCAGGGGTGGGGAGCAGT
GCCTGTATAAACGTGGCTGTACATAGAAAGATCTATTGTGGGAGCAGGAGGGGCAAGCCAGCCT
CAGCTGCTAGGGTGAGGGCTGGGAAGGGAGGGACAATCTCTGTGGACCCTTGGGAGGGGAGGGG
TGCTGCTTGGATGTCACAGGGCTGGTGGCTGGGGCGGTCCTGGGGACTATAGGATAATGTGATG
ACACTCTGGACAACAACAACAAAAAAAAATACAAAACTGGTGAGGTTAAAGCTCTGTGTGTGTG
TGTGAGTGTGTGTGTGTGTGTGTGTATGGGGGGGGATTTTCCCCCCTATGGGGAATGCTGATAC
CAGAGGACCCTGGCACACCAAATCAGACACTGTTAAGAAAGTGTACAAACTTTATTGGAGCAAC
ACGCTCGCACGCGCGCACACACACACACACAAAAGCAAGCTCACACAACACCTGTGGATCGAGA
A

hide sequence

RefSeq Acc Id:

XM_006247473 ⟹ XP_006247535

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	87,393,888 - 87,404,051 (-)	NCBI
Rnor_6.0	10	90,383,111 - 90,393,476 (-)	NCBI
Rnor_5.0	10	90,171,989 - 90,181,994 (-)	NCBI

Sequence:

show sequence

CCGCTCCGGGCGGAGACAATCGCGCCGAGCGGGCGCCGCAGCCGGAGCGGGAGCCCAACCCGGA
GCTGCACAGAGCGGTGCAGAGCTGGGGCTGAGCGGGGCCGGCCGAGCAGGGCCGGGCGGCAGCG
ATGGACCGCTAGGGCCCGGCCGAGCCCCGCGATGCCGCCGCCAAGTGGCCCCGGAGTCCTCGCG
CGGCTGCTGCCGCTGCTGGGGCTGCTGCTCGGCGGCGCCTCCCGGGCTCCCGGCAAGTCTCCGC
CGGAGCCCCCCAGCCCTCAGGAGATCCTGATCAAAGTACAGGTATATGTGAGCGGGGAGCTGGT
GCCCCTGGCCCGGGCCTCAGTAGACGTGTTTGGGAACCGCACTCTACTGGCTGCTGGTACCACG
GACTCAGAGGGCGTGGCCACACTACCCCTCAGTTACCGCCTGGGTACCTGGGTGTTGGTCACTG
CTGCCCGTCCGGGTTTCCTCACCAACTCAGTGCCGTGGCGTGTTGACAAGCTGCCGTTGTATGC
ATCCGTCAGCCTCTACCTGCTCCCAGAGCGGCCAGCCACCCTCATCCTCTATGAGGACCTTGTG
CACATCCTTCTAGGCTCTCCAGGTGCCCGCTCCCAGCCCTGGGTGCAGTTCCAGCGTAGAGCTG
CCCGCCTGCCCGTCAGCTCCACCTACAACCAGCTTTGGGCTTCGCTCACCCCTGCCAGCACCCA
GCAGGAAATGCGGGCTTTCCCTGCCTTCCTGGGGACTGAGGCCTCTAGCTCAGGCAATGGCTCC
TGGCTGGAGCTGATACCCCTGACTGCTGTGAGCGTACACCTGCTAACGGGCAATGGGACAGAGG
TGCCTCTCTCAGGCCCCATTCACCTGTCCCTGCCAGTACCCTCAGAGCCTCGTGCCCTTGCTGT
GGGCACCAGCATTCCAGCCTGGAGGTTTGACCCCAAGAGTGGGCTGTGGGTGCGAAATGGCACT
GGTGTGATTCGGAAGGAAGGCCGACAGCTCTACTGGACTTTTGTCTCCCCGCAGCTAGGGTACT
GGGTAGCTGCCATGGCCTCCCCTACATCTGGCATTCAGGACATCGGCACGTACCACACAATCTT
CCTGTTGACCATCCTGGCAGCCCTAGCCCTGCTGGTTCTCATTCTGCTGTGTCTTCTGATCTAC
TACTGCCGACGACGCTGCTTGAAACCAAGACAACAGCACCGCAAGCTGCAGCTCTCCGGCCCCT
CGGACAACAAACGAGATCAGGCTACGTCGATGTCTCAACTCCATCTTATCTGCGGGGGACCCCT
GGAGCCTACGTCGTCGGGAGACCCCGAGGCCCCTCCCCCAGGCTCCCTACACTCGGCCTTCTCC
AGCTCCCGAGACTTAGCATCCTCCCGGGATGACTTCTTCCGTGCCAAACCGCGATCCGCCAGTC
GACCAGCCGCCGAGCCTCCTGGTGCCCGCAGCGTTGAAGGTGCCGGGCTTAAGGGCGCCCGCTC
CGTCGAGGGTCCCGGCGTGCTGGAGCCCAGCCTGGAAGAATACCGGCGGGGTCCAGCGGGAGCC
GCTGCCTTCCTGCATGAGGCCCCCTCGCCGCCGCCGTCCTTCGACCATTATCTGGGCCACAAGG
GGGCGGCCGAGAGCAAGACCCCCGACTTTCTGCTGTCACAGTCGGTGGACCAGTTGGCGCGGCC
GCCGTCCCTCAGCCAGCCCGGCCAGCTCATTTTCTGCGGTTCCATCGACCACCTCAAGGACAAC
GTGTACCGCAATGTCATGCCCACCCTGGTCATCCCCGCACACTATGTGCGCCTGGGCGGAGAGG
CGGGCGCCGCGGGAGTGGGCGACGAGGCCACCCCGCCGGAGGGCTCGGCCGCCGGCCCCGCGCG
CCCCTTCCCTCAACCTGATCCCCAGCGCCCGCTGATACAGGGCCACGCAGGTGCGGGAGGCGAC
GGCGGTGGCGGCGAGGGCTGGGGCGGCGGGCGCTCCGCACCGGTCAGCGGTTCGGTCACCATTC
CGGTGCTGTTCAACGAGTCCACCATGGCGCAGCTCAACGGCGAGCTGCAGGCTCTGACCGAGAA
GAAGCTGCTGGAACTGGGCGTGAAGCCTCACCCGCGCGCCTGGTTCGTGTCCCTGGACGGACGT
TCCAACTCGCAAGTGCGCCACTCCTACATCGACCTGCAGGCGGGCGGCGGCGGTCGCAGCACAG
ATGCCAGCCTGGACTCAGGCGTCGACGTGCACGAGGCTCGACCTGCGCGCCGCCGGCCCCCGAG
GGAGGAGCGGGAGCGCGCGCAGCCACCCGCGCCGCCGCCGCCCGCGCCCCCGCGCCTGGCGCTC
AGCGAAGACACAGAGCCCAGCAGCAGTGAGAGCCGCACAGGCCTCTGCTCGCCAGAGGACAACT
CGCTAACGCCCCTGCTGGACGAGGTGGTGGCACCCGAAGGCCGGGCAGCCACAGTACCCAGGGG
TCGGGGCCGCAGCCGTGGGGACAGTTCCCGCAGTAGCGCCAGTGAGCTGCGGCGCGACTCGCTC
ACCAGCCCCGAGGACGAGCTAGGGGCGGAGGTGGGTGATGAGGCTGGCGACAAAAAGAGCCCGT
GGCAGCGGCGGGAGGAGCGGCCGCTAATGGTGTTCAATGTCAAGTAGTGCGGCCCGGGGGTCGC
CCACCGCCCCTGCCGCCAGTGCAGATTCCCAGGGTGCGCGCCCCGGGATGCTGCAGCAGAGGGG
CATACGCTCTTAGCCCGGAGAAGAGCTCATGGGTCAGCTGAGCTCATCTGTGGTTTGTGCTGGG
GGAGTGTCTTGGGAAGGGACCCTGGATTGGCCTCTAAGCAGAGGGAGGTGGGAGGGACCCGGTC
CCCTAAGGGAGGGGCTGGGGAGGAGGGCAGGGGTGGGGAGCAGTGCCTGTATAAACGTGGCTGT
ACATAGAAAGATCTATTGTGGGAGCAGGAGGGGCAAGCCAGCCTCAGCTGCTAGGGTGAGGGCT
GGGAAGGGAGGGACAATCTCTGTGGACCCTTGGGAGGGGAGGGGTGCTGCTTGGATGTCACAGG
GCTGGTGGCTGGGGCGGTCCTGGGGACTATAGGATAATGTGATGACACTCTGGACAACAACAAC
AAAAAAAAATACAAAACTGGTGAGGTTAAAGCTCTGTGTGTGTGTGTGAGTGTGTGTGTGTGTG
TGTGTATGGGGGGGGATTTTCCCCCCTATGGGGAATGCTGATACCAGAGGACCCTGGCACACCA
AATCAGACACTGTTAAGAAAGTGTACAAACTTTATTGGAGCAACACGCTCGCACGCGCGCACAC
ACACACACACAAAAGCAAGCTCACACAACACCTGTGGATCGAGAA

hide sequence

RefSeq Acc Id:

XM_006247474 ⟹ XP_006247536

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	87,393,888 - 87,404,038 (-)	NCBI
Rnor_6.0	10	90,383,111 - 90,393,193 (-)	NCBI
Rnor_5.0	10	90,171,989 - 90,181,994 (-)	NCBI

Sequence:

show sequence

CTCGGCCTCGAGGGGCGGCGATCGTGGGCCTGTACCCCGTGATCGACTGCCACCGCTGGCCCCC
TCTTCACGGTGCTAGTGACTTGAGATGCATTCTGCTCCCAGGATGGGGGGAAGGCGACATGAGA
TCGGTGTTTCTGGGGGAGAGATAAGGGGACTGTTTGCTGCGGGGCTCTTGGGGAGACACAATGG
GGAGGGCGAGGGTCTCCAGGCTCGGCGCTACTGCCTCCTCCGACTTGTTTTTCTCCCTCCTGGT
CCGCGAGGCACTGCAGCCAGAGCTATTGTCTGCGGAAGACACCCGCCCAGGGGCGGGCTGGGGC
GGGCGCCGGCTCCGCAGCCCCCCGCGGGTCCCTAGCTGAGACCCAAGCTGGGTGGGGGCGCAGG
CATCGGCTGCCACCCTGGCCGGACTTGGGCTGGGAGCTTAGAACTGGGCTGTAAGGGGGGGAGG
GGAGAGGGGGAGTGGGTGAGGCTGTGGGCGGGATTGACTGCTCGAATGGGGTTTTCACCCAGGA
GCCTGACAGCTTCCAGCCAACCCCCCAGGTTCAGAATTTGGGGCGCACCGAATAAACACTGATC
AGCTCATGCTAGAGGGAGGGGATGCATTTGGAGGGGGGCTGAGAATAGACGTTATTGTGACTTC
CCCAGCTCAAGGCGCATGGCAGGGCTGTGGTCATGGAGCCATGCTGAGCTGGCTGGCTAGCTGT
GGCAGTACCAGCTGAGAGGGCAGGTGTCTGGGTCCTTGTCCAGTCTGTCTACCACTCTCCTCTA
CCAGCTTCCAGATCTCCCGCTCTTCAGGTCACTTAACACCCCCCCTCCCAAGGAGACCCTCCTA
ATGCCTAACCTGGCCCACATGGCTGTGTGAGGTGAGGGTAGAGCCGGCCCCTGCAGTGGGAACT
GGAGACCCTGACTCCACTGCTCACTCCGAGGTGCTCCGGGCCTCCCCCTCCTCATCCCTGCTTC
CCTCTCCCACCTTTCTGGTTCCTGCGCCGCCACCACCCCACAATTGCTGTTCCTTCCCCTGCCT
GTGGCTCCATCCTGAAACAGTGTTCTTTGCTCCTTACGCCACCCCCCTTACACACACACACACA
CACACACACACACACACACACACACACACACACACCAGAAGCTAGCAGGAAAGGCGGAAGGGGG
TGGGGGTCTGGTTGAGGGAAGTAGGGTCCGGATGAAGGGAGGAGGTCGGATTTCCTCCTGGAAT
AGGCAGAGCTAAGTGGAGAGATGCCGATGCTGTATGGAATGGCAAGCTTTGAGGGTGGGGAGGG
AACTTCCTGTGCCTCAGTCTCCCCTGATTTTCCAGAGAAGAGGCCCAAGCTTCTTAGGAAGCTC
CTCCTCCAAGGCTCTGCACCCCAGGGAAGGGAGGGCCCAGGGAATTGGCTGGAATAGAGCCAGA
ATAGGGGGCTCTCTCAGGCAGCTGGCTGGGAGCCCAGGCTGTGGGGAAGAGGGGAAAGAGTCTG
CTAGACACCTGCCCCACCTCCCAGCCTGGCAATGATGAGCCTTTGGATCTTACCTGCCCACCAA
TGTTTTGTTCCCAGGTCCCTCCCTCCCCTCTTTTGAGGCTTTGGCCCTTGAGCCAAAAGGCTTC
CCTCAAGTGACAAAATTTCAGACTCCTGGATCCCTTCTTCCCAGCTGCTCGCTCCAGCTGTTCC
TAGCCTAGGATGGGGCCAGACTCTTTTAGCTTCTCAGAATTCCTACTGGGGCAGGAGACTGCCA
CTCCTTGGAGAGCCAGAGTGGGAGTGGGCAGTGTGGGTGCCCCACCCTGAAAAGCTAGACTCTG
GCCTATCCTGGAGAGGGAGGTGGGCTCTGGGAATAGCCGGATGGGATGCCAGGACCAGGCGTGG
TATCCTGCGTTGGAAGCCTGAGAAGAGACACCTGTCACTGTCGAGTGTCAAGTCAGTGAAATGC
CTCATCGAGGTTCAGTGGCTGCCCACCCCACCCCGGTCCCGCCCGCTTCTGCTCTCAGCTCCAG
ACTCCTTCTGTACCTGGGATTTCCCCCAGTACCCAGTGTATCCTCCCACTTGCCTTCTGAGCTT
CCAAACCTCCCCATCTACGACACTCATTAGGAAGGCAGGGGCGGGGCATAGTCTTGAGGGAGAA
GCTGGTGCTAAGTGGAAAAGGTTAGATGGCAGAGGCGGCCTATAGAAATCCAGGAGAGTAACTC
AAGTCCTCGTCATCTCTCTAAGCACCTCATACTGGCCAGATTACCCTGAGGCGGGGAGGCTGGA
GGGGGGGGCACAGATAGCCTCGGGATTAGAAGTTCATGCTTCCTTCCCAGTCCCCTGCACACTA
TTTCCCCTGGGCCTGGGTCTGCTTTCCATGTAGCCCTTCCTCATCAGGGCCCCAGCTCCTTTGC
TTGATCTCCTGGGAGGAATGAGGGCGTTGCCATGGTGACTGACTGTAGCTGACCAGCTATAGAC
CTGAAGGGAGGGATCAAGATACTCCTTTGGGCTTAGGAGATGGTACAGGTCCCTAAATTTGAAG
GGAAACAGGTTTTGGAAAGGATCCTGGGAAGAGGGTGTGTGCTAGAAGTAACAGGTTCCTTAGC
GACTTGATTTGATTTTTTTCTTTCTTTCTTTCTTTCTTGAGAACTCAAGCAGGGACCCAGCCTC
CATCCTTTCTCTAAGTTACTTGATCTTGCCCTCTCCCCCTCCACCTGAGGTTCCCCACCGCCCC
CCCCCACTCATTTTTTCTTGGTCTCTCTTCTCTTCTCCATAGATCACTGGTCTCTTAGGGTGGA
CCGGCTAACAGTTTATATTCTGGAAGTAGACTACTAGTTTCAGAGCTCAGATTTCTCACTTAAC
TGTAGTGCAAGAACTTTGCATCTTCTAAGCCTCAGTTTCTTTATCTGTAAAATGGGCTGAGGGC
TTACTTTAGCAAATATAGCATTTCCTTGGCTCTAAGATATAGTCATGTTTTGTGAACCACTAAG
AATGAGGGTGGGGTGGGTGGGGAATGCTGTCGATTGTAACAATGACACCACCCATCATGGCCAT
TGCCCAAGTTTAGAAATGTGAAAGTATGCATGGGCTAGCTCTGGTGAAAGGGGATAGCCCTCTC
TCCTCTGCTGGCTTTGGCAGAGAACACAACTCAGTGACAGAGGCCCTGGATTTGATCCCAGCAC
TGCGCTGGAGTCAGCCCCCAAATCTCTCTCCCCCAACAGACCCCCTCCTCACTCCTCATCCCCT
GACCTCGTCTTCCCACAGAGATCCTGATCAAAGTACAGTGTATGCATCCGTCAGCCTCTACCTG
CTCCCAGAGCGGCCAGCCACCCTCATCCTCTATGAGGACCTTGTGCACATCCTTCTAGGCTCTC
CAGGTGCCCGCTCCCAGCCCTGGGTGCAGTTCCAGCGTAGAGCTGCCCGCCTGCCCGTCAGCTC
CACCTACAACCAGCTTTGGGCTTCGCTCACCCCTGCCAGCACCCAGCAGGAAATGCGGGCTTTC
CCTGCCTTCCTGGGGACTGAGGCCTCTAGCTCAGGCAATGGCTCCTGGCTGGAGCTGATACCCC
TGACTGCTGTGAGCGTACACCTGCTAACGGGCAATGGGACAGAGGTGCCTCTCTCAGGCCCCAT
TCACCTGTCCCTGCCAGTACCCTCAGAGCCTCGTGCCCTTGCTGTGGGCACCAGCATTCCAGCC
TGGAGGTTTGACCCCAAGAGTGGGCTGTGGGTGCGAAATGGCACTGGTGTGATTCGGAAGGAAG
GCCGACAGCTCTACTGGACTTTTGTCTCCCCGCAGCTAGGGTACTGGGTAGCTGCCATGGCCTC
CCCTACATCTGGGCTGGTTACCATCACCTCAGGCATTCAGGACATCGGCACGTACCACACAATC
TTCCTGTTGACCATCCTGGCAGCCCTAGCCCTGCTGGTTCTCATTCTGCTGTGTCTTCTGATCT
ACTACTGCCGACGACGCTGCTTGAAACCAAGACAACAGCACCGCAAGCTGCAGCTCTCCGGCCC
CTCGGACAACAAACGAGATCAGGCTACGTCGATGTCTCAACTCCATCTTATCTGCGGGGGACCC
CTGGAGCCTACGTCGTCGGGAGACCCCGAGGCCCCTCCCCCAGGCTCCCTACACTCGGCCTTCT
CCAGCTCCCGAGACTTAGCATCCTCCCGGGATGACTTCTTCCGTGCCAAACCGCGATCCGCCAG
TCGACCAGCCGCCGAGCCTCCTGGTGCCCGCAGCGTTGAAGGTGCCGGGCTTAAGGGCGCCCGC
TCCGTCGAGGGTCCCGGCGTGCTGGAGCCCAGCCTGGAAGAATACCGGCGGGGTCCAGCGGGAG
CCGCTGCCTTCCTGCATGAGGCCCCCTCGCCGCCGCCGTCCTTCGACCATTATCTGGGCCACAA
GGGGGCGGCCGAGAGCAAGACCCCCGACTTTCTGCTGTCACAGTCGGTGGACCAGTTGGCGCGG
CCGCCGTCCCTCAGCCAGCCCGGCCAGCTCATTTTCTGCGGTTCCATCGACCACCTCAAGGACA
ACGTGTACCGCAATGTCATGCCCACCCTGGTCATCCCCGCACACTATGTGCGCCTGGGCGGAGA
GGCGGGCGCCGCGGGAGTGGGCGACGAGGCCACCCCGCCGGAGGGCTCGGCCGCCGGCCCCGCG
CGCCCCTTCCCTCAACCTGATCCCCAGCGCCCGCTGATACAGGGCCACGCAGGTGCGGGAGGCG
ACGGCGGTGGCGGCGAGGGCTGGGGCGGCGGGCGCTCCGCACCGGTCAGCGGTTCGGTCACCAT
TCCGGTGCTGTTCAACGAGTCCACCATGGCGCAGCTCAACGGCGAGCTGCAGGCTCTGACCGAG
AAGAAGCTGCTGGAACTGGGCGTGAAGCCTCACCCGCGCGCCTGGTTCGTGTCCCTGGACGGAC
GTTCCAACTCGCAAGTGCGCCACTCCTACATCGACCTGCAGGCGGGCGGCGGCGGTCGCAGCAC
AGATGCCAGCCTGGACTCAGGCGTCGACGTGCACGAGGCTCGACCTGCGCGCCGCCGGCCCCCG
AGGGAGGAGCGGGAGCGCGCGCAGCCACCCGCGCCGCCGCCGCCCGCGCCCCCGCGCCTGGCGC
TCAGCGAAGACACAGAGCCCAGCAGCAGTGAGAGCCGCACAGGCCTCTGCTCGCCAGAGGACAA
CTCGCTAACGCCCCTGCTGGACGAGGTGGTGGCACCCGAAGGCCGGGCAGCCACAGTACCCAGG
GGTCGGGGCCGCAGCCGTGGGGACAGTTCCCGCAGTAGCGCCAGTGAGCTGCGGCGCGACTCGC
TCACCAGCCCCGAGGACGAGCTAGGGGCGGAGGTGGGTGATGAGGCTGGCGACAAAAAGAGCCC
GTGGCAGCGGCGGGAGGAGCGGCCGCTAATGGTGTTCAATGTCAAGTAGTGCGGCCCGGGGGTC
GCCCACCGCCCCTGCCGCCAGTGCAGATTCCCAGGGTGCGCGCCCCGGGATGCTGCAGCAGAGG
GGCATACGCTCTTAGCCCGGAGAAGAGCTCATGGGTCAGCTGAGCTCATCTGTGGTTTGTGCTG
GGGGAGTGTCTTGGGAAGGGACCCTGGATTGGCCTCTAAGCAGAGGGAGGTGGGAGGGACCCGG
TCCCCTAAGGGAGGGGCTGGGGAGGAGGGCAGGGGTGGGGAGCAGTGCCTGTATAAACGTGGCT
GTACATAGAAAGATCTATTGTGGGAGCAGGAGGGGCAAGCCAGCCTCAGCTGCTAGGGTGAGGG
CTGGGAAGGGAGGGACAATCTCTGTGGACCCTTGGGAGGGGAGGGGTGCTGCTTGGATGTCACA
GGGCTGGTGGCTGGGGCGGTCCTGGGGACTATAGGATAATGTGATGACACTCTGGACAACAACA
ACAAAAAAAAATACAAAACTGGTGAGGTTAAAGCTCTGTGTGTGTGTGTGAGTGTGTGTGTGTG
TGTGTGTATGGGGGGGGATTTTCCCCCCTATGGGGAATGCTGATACCAGAGGACCCTGGCACAC
CAAATCAGACACTGTTAAGAAAGTGTACAAACTTTATTGGAGCAACACGCTCGCACGCGCGCAC
ACACACACACACAAAAGCAAGCTCACACAACACCTGTGGATCGAGAA

hide sequence

RefSeq Acc Id:

XM_039087758 ⟹ XP_038943686

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	87,393,888 - 87,403,892 (-)	NCBI

RefSeq Acc Id:

XM_039087759 ⟹ XP_038943687

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	87,393,888 - 87,400,461 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_002727867	(Get FASTA)	NCBI Sequence Viewer
	XP_006247535	(Get FASTA)	NCBI Sequence Viewer
	XP_006247536	(Get FASTA)	NCBI Sequence Viewer
	XP_038943686	(Get FASTA)	NCBI Sequence Viewer
	XP_038943687	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_002727867 ⟸ XM_002727821
- Peptide Label:	isoform X1
- UniProtKB:	D3ZT47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVF GNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPER PATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYNQLWASLTPASTQQEMRAFPAFL GTEASSSGNGSWLELIPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFD PKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLT ILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPT SSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARSVEGAGLKGARSVEG PGVLEPSLEEYRRGPAGAAAFLHEAPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLARPPSL SQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFP QPDPQRPLIQGHAGAGGDGGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLL ELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPPREER ERAQPPAPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGR SRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK hide sequence

RefSeq Acc Id:

XP_006247535 ⟸ XM_006247473

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVF
GNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPER
PATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYNQLWASLTPASTQQEMRAFPAFL
GTEASSSGNGSWLELIPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFD
PKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGIQDIGTYHTIFLLTILAALAL
LVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEA
PPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARSVEGAGLKGARSVEGPGVLEPS
LEEYRRGPAGAAAFLHEAPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQPGQLI
FCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFPQPDPQRP
LIQGHAGAGGDGGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPH
PRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPPREERERAQPPA
PPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSR
SSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK

hide sequence

RefSeq Acc Id:

XP_006247536 ⟸ XM_006247474

- Peptide Label:

isoform X3

- Sequence:

show sequence

MHGLALVKGDSPLSSAGFGREHNSVTEALDLIPALRWSQPPNLSPPTDPLLTPHPLTSSSHRDP
DQSTVYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYNQLWAS
LTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPS
EPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGLVTI
TSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQA
TSMSQLHLICGGPLEPTSSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPG
ARSVEGAGLKGARSVEGPGVLEPSLEEYRRGPAGAAAFLHEAPSPPPSFDHYLGHKGAAESKTP
DFLLSQSVDQLARPPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGD
EATPPEGSAAGPARPFPQPDPQRPLIQGHAGAGGDGGGGEGWGGGRSAPVSGSVTIPVLFNEST
MAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGV
DVHEARPARRRPPREERERAQPPAPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDE
VVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERP
LMVFNVK

hide sequence

RefSeq Acc Id:

ENSRNOP00000028563 ⟸ ENSRNOT00000028563

RefSeq Acc Id:	XP_038943686 ⟸ XM_039087758
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038943687 ⟸ XM_039087759
- Peptide Label:	isoform X3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697790

Promoter ID:

EPDNEW_R8313

Type:

multiple initiation site

Name:

Fam171a2_1

Description:

family with sequence similarity 171, member A2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	90,393,405 - 90,393,465	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307966	AgrOrtholog
Ensembl Genes	ENSRNOG00000021041	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000028563	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028563	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Uncharacterised_FAM171	UniProtKB/TrEMBL
KEGG Report	rno:100361389	UniProtKB/TrEMBL
NCBI Gene	287736	ENTREZGENE
PANTHER	PTHR31626	UniProtKB/TrEMBL
Pfam	UPF0560	UniProtKB/TrEMBL
PhenoGen	Fam171a2	PhenoGen
UniProt	D3ZT47	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Fam171a2	family with sequence similarity 171, member A2	RGD1307966	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-02	RGD1307966	similar to hypothetical protein	LOC100361389	hypothetical protein LOC100361389	Data Merged	1643240	APPROVED
2010-05-05	LOC100361389	hypothetical protein LOC100361389			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1307966	similar to hypothetical protein	RGD1307966_predicted	similar to hypothetical protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307966_predicted	similar to hypothetical protein (predicted)	LOC287736_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC287736_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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