Abca5 (ATP binding cassette subfamily A member 5) - Rat Genome Database

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Gene: Abca5 (ATP binding cassette subfamily A member 5) Rattus norvegicus
Analyze
Symbol: Abca5
Name: ATP binding cassette subfamily A member 5
RGD ID: 628661
Description: Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in several processes, including cholesterol efflux; cholesterol homeostasis; and regulation of cholesterol transport. Located in Golgi apparatus. Orthologous to human ABCA5 (ATP binding cassette subfamily A member 5); PARTICIPATES IN transport pathway; INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 1,3-dinitrobenzene; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-binding cassette sub-family A member 5; ATP-binding cassette, sub-family A (ABC1), member 5; ATP-binding cassette, subfamily A (ABC1), member 5; cholesterol transporter ABCA5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21095,240,159 - 95,309,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,240,154 - 95,308,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10100,294,252 - 100,362,644 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01099,757,272 - 99,825,665 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01095,165,548 - 95,233,940 (-)NCBIRnor_WKY
Rnor_6.01098,573,226 - 98,645,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,576,039 - 98,644,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01098,279,926 - 98,351,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,724,778 - 99,793,593 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,739,147 - 99,807,963 (-)NCBI
Celera1093,891,432 - 93,960,222 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,3,5-trinitro-1,3,5-triazinane  (EXP)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
clorgyline  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fonofos  (ISO)
furan  (EXP)
gallic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
L-methionine  (ISO)
linsidomine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methylmercury chloride  (ISO)
N-acetyl-L-cysteine  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
parathion  (ISO)
phenethyl caffeate  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
terbufos  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ABCA5 resides in lysosomes, and ABCA5 knockout mice develop lysosomal disease-like symptoms. Kubo Y, etal., Mol Cell Biol 2005 May;25(10):4138-49.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Cloning of human and rat ABCA5/Abca5 and detection of a human splice variant. Petry F, etal., Biochem Biophys Res Commun 2003 Jan 10;300(2):343-50.
5. Subcellular localisation of rAbca5, a rat ATP-binding cassette transporter expressed in Leydig cells, and characterisation of its splice variant apparently encoding a half-transporter. Petry F, etal., Biochem J 2005 Sep 14;.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20382126  


Genomics

Comparative Map Data
Abca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21095,240,159 - 95,309,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,240,154 - 95,308,976 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10100,294,252 - 100,362,644 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01099,757,272 - 99,825,665 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01095,165,548 - 95,233,940 (-)NCBIRnor_WKY
Rnor_6.01098,573,226 - 98,645,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,576,039 - 98,644,938 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01098,279,926 - 98,351,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,724,778 - 99,793,593 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,739,147 - 99,807,963 (-)NCBI
Celera1093,891,432 - 93,960,222 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
ABCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381769,244,311 - 69,327,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1769,244,311 - 69,327,244 (-)EnsemblGRCh38hg38GRCh38
GRCh371767,240,452 - 67,323,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,754,386 - 64,834,885 (-)NCBINCBI36Build 36hg18NCBI36
Build 341764,754,386 - 64,834,885NCBI
Celera1763,812,102 - 63,894,875 (-)NCBICelera
Cytogenetic Map17q24.3NCBI
HuRef1762,625,936 - 62,708,949 (-)NCBIHuRef
CHM1_11767,305,073 - 67,387,811 (-)NCBICHM1_1
T2T-CHM13v2.01770,120,918 - 70,203,761 (-)NCBIT2T-CHM13v2.0
Abca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911110,160,195 - 110,228,542 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11110,160,195 - 110,228,542 (-)EnsemblGRCm39 Ensembl
GRCm3811110,269,369 - 110,337,723 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11110,269,369 - 110,337,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711110,130,683 - 110,199,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611110,088,340 - 110,153,765 (-)NCBIMGSCv36mm8
Celera11122,007,376 - 122,077,299 (-)NCBICelera
Cytogenetic Map11E1NCBI
Abca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554783,519,368 - 3,586,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554783,526,376 - 3,586,811 (+)NCBIChiLan1.0ChiLan1.0
ABCA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11768,560,610 - 68,642,471 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,563,702 - 68,629,791 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01763,172,670 - 63,255,587 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ABCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,708,070 - 15,781,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,420,835 - 15,783,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,600,274 - 16,672,802 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,369,465 - 17,442,894 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,369,925 - 17,442,845 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,313,793 - 16,386,862 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,147,500 - 11,219,940 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,146,365 - 11,219,543 (+)NCBIUU_Cfam_GSD_1.0
Abca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560210,632,645 - 10,730,283 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365418,463,436 - 8,539,942 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365418,467,035 - 8,549,893 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,067,500 - 11,152,688 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,018,692 - 11,152,916 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,331,441 - 11,338,746 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,278,563 - 52,373,218 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1652,278,573 - 52,362,273 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607723,173,583 - 23,258,733 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248704,153,594 - 4,218,132 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248704,150,287 - 4,224,448 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abca5
373 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:259
Count of miRNA genes:180
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000005848, ENSRNOT00000075561
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
12880055Am11Aortic mass QTL 110.004aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)108400727295933025Rat
2301398Kidm38Kidney mass QTL 380.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)108400727295933025Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1085565469103884409Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
2313856Bp342Blood pressure QTL 3424.40.0001life span trait (VT:0005372)age at time of death (CMO:0001193)108730761796121100Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1558652Bw57Body weight QTL 574.20.0008body mass (VT:0001259)body weight (CMO:0000012)1090910316107211142Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091228102104060283Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1092238497101012337Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
631558Bp137Blood pressure QTL 1370.013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)109472486096836268Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat

Markers in Region
AU048011  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21095,272,405 - 95,272,693 (+)MAPPERmRatBN7.2
Rnor_6.01098,608,318 - 98,608,607NCBIRnor6.0
Rnor_5.01098,315,018 - 98,315,307UniSTSRnor5.0
RGSC_v3.41099,757,024 - 99,757,311UniSTSRGSC3.4
Celera1093,923,664 - 93,923,953UniSTS
Cytogenetic Map10q32.1UniSTS
RH143977  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21095,273,966 - 95,275,221 (+)MAPPERmRatBN7.2
Rnor_6.01098,609,881 - 98,611,135NCBIRnor6.0
Rnor_5.01098,316,581 - 98,317,835UniSTSRnor5.0
RGSC_v3.41099,758,585 - 99,759,839UniSTSRGSC3.4
Celera1093,925,227 - 93,926,481UniSTS
RH 3.4 Map101070.9UniSTS
Cytogenetic Map10q32.1UniSTS
AI535109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21095,240,230 - 95,240,444 (+)MAPPERmRatBN7.2
Rnor_6.01098,576,111 - 98,576,324NCBIRnor6.0
Rnor_5.01098,282,811 - 98,283,024UniSTSRnor5.0
RGSC_v3.41099,724,850 - 99,725,063UniSTSRGSC3.4
Celera1093,891,504 - 93,891,717UniSTS
RH 3.4 Map101070.0UniSTS
Cytogenetic Map10q32.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 47 8 11
Low 40 44 32 18 32 8 10 27 35 33 8
Below cutoff 3 3 9 9 1 9 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005848   ⟹   ENSRNOP00000005848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,240,159 - 95,308,976 (-)Ensembl
Rnor_6.0 Ensembl1098,576,039 - 98,644,800 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000075561   ⟹   ENSRNOP00000066425
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,240,154 - 95,308,976 (-)Ensembl
Rnor_6.0 Ensembl1098,576,046 - 98,644,938 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096455   ⟹   ENSRNOP00000097094
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1095,240,159 - 95,308,976 (-)Ensembl
RefSeq Acc Id: NM_173307   ⟹   NP_775429
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21095,240,159 - 95,308,976 (-)NCBI
Rnor_6.01098,576,039 - 98,644,800 (-)NCBI
Rnor_5.01098,279,926 - 98,351,693 (-)NCBI
RGSC_v3.41099,724,778 - 99,793,593 (-)RGD
Celera1093,891,432 - 93,960,222 (-)RGD
Sequence:
RefSeq Acc Id: XR_005489702
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21095,246,482 - 95,309,195 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_775429   ⟸   NM_173307
- UniProtKB: Q80Z07 (UniProtKB/Swiss-Prot),   Q8CF82 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066425   ⟸   ENSRNOT00000075561
RefSeq Acc Id: ENSRNOP00000005848   ⟸   ENSRNOT00000005848
RefSeq Acc Id: ENSRNOP00000097094   ⟸   ENSRNOT00000096455
Protein Domains
ABC transporter

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CF82-F1-model_v2 AlphaFold Q8CF82 1-1642 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697866
Promoter ID:EPDNEW_R8390
Type:multiple initiation site
Name:Abca5_1
Description:ATP binding cassette subfamily A member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01098,645,003 - 98,645,063EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628661 AgrOrtholog
BioCyc Gene G2FUF-22817 BioCyc
Ensembl Genes ENSRNOG00000004378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005848 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000066425.3 UniProtKB/TrEMBL
  ENSRNOP00000097094.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005848 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000075561.3 UniProtKB/TrEMBL
  ENSRNOT00000096455.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCA5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:286970 UniProtKB/Swiss-Prot
NCBI Gene 286970 ENTREZGENE
PANTHER PTHR19229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19229:SF100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abca5 PhenoGen
PROSITE ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6ATV2_RAT UniProtKB/TrEMBL
  ABCA5_RAT UniProtKB/Swiss-Prot
  M0RA83_RAT UniProtKB/TrEMBL
  Q80Z07 ENTREZGENE
  Q8CF82 ENTREZGENE
UniProt Secondary Q80Z07 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-09 Abca5  ATP binding cassette subfamily A member 5  Abca5  ATP-binding cassette, subfamily A (ABC1), member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-16 Abca5  ATP-binding cassette, subfamily A (ABC1), member 5  Abca5  ATP-binding cassette, sub-family A (ABC1), member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Abca5  ATP-binding cassette, sub-family A (ABC1), member 5      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Abca5  ATP-binding cassette, sub-family A (ABC1), member 5      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in testis  
gene_expression expressed in hepatocytes