Cacna1g (calcium voltage-gated channel subunit alpha1 G) - Rat Genome Database

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Gene: Cacna1g (calcium voltage-gated channel subunit alpha1 G) Rattus norvegicus
Analyze
Symbol: Cacna1g
Name: calcium voltage-gated channel subunit alpha1 G
RGD ID: 68942
Description: Enables low voltage-gated calcium channel activity. Involved in several processes, including artery smooth muscle contraction; calcium ion transport; and cellular response to dexamethasone stimulus. Located in dendrite; neuronal cell body; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in cerebellar ataxia type 42. Orthologous to human CACNA1G (calcium voltage-gated channel subunit alpha1 G); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH (S)-amphetamine; 17beta-estradiol; 3-isobutyl-1-methyl-7H-xanthine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium channel, voltage-dependent, T type, alpha 1G subunit; voltage-dependent T-type calcium channel subunit alpha-1G; voltage-gated calcium channel subunit alpha Cav3.1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Cacna1gm1Mcwi  
Genetic Models: SS-Cacna1gm1Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,851,886 - 79,919,926 (-)NCBIGRCr8
mRatBN7.21079,354,998 - 79,422,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,355,008 - 79,422,752 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,959,837 - 84,027,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,457,956 - 83,525,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,972,823 - 79,040,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,129,071 - 82,197,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,129,506 - 82,197,848 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,950,594 - 82,017,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,043,636 - 83,112,886 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,058,005 - 83,127,256 (-)NCBI
Celera1078,143,865 - 78,211,268 (-)NCBICelera
RH 3.4 Map10617.6RGD
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (EXP)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP)
actinomycin D  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
allethrin  (EXP)
ammonium chloride  (EXP)
androgen antagonist  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
barium(0)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylparaben  (EXP)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
cannabidiol  (EXP)
cerium  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
colforsin daropate hydrochloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
Cuprizon  (EXP)
daunorubicin  (ISO)
DDE  (EXP)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzacamene  (EXP)
epoxiconazole  (EXP,ISO)
erbium  (ISO)
ethanol  (ISO)
fluoxetine  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gadolinium atom  (ISO)
genistein  (ISO)
holmium atom  (ISO)
indole-3-methanol  (EXP)
L-methionine  (ISO)
lanthanum atom  (ISO)
linuron  (EXP)
menadione  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
Mibefradil  (EXP,ISO)
mitoxantrone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
neodymium atom  (ISO)
nickel atom  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
permethrin  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
potassium dichromate  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
progesterone  (EXP,ISO)
propanal  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
scandium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
tamoxifen  (ISO)
telmisartan  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
ytterbium  (ISO)
yttrium atom  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway   (ISO)
calcium transport pathway   (ISO)
calcium/calcium-mediated signaling pathway  (IEA,ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway   (ISO)
mitogen activated protein kinase signaling pathway  (IEA)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway   (ISO)
type 2 diabetes mellitus pathway  (IEA)
verapamil pharmacodynamics pathway  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Regulation of T-type Cav3.1 channels expression by synthetic glucocorticoid dexamethasone in neonatal cardiac myocytes. BenMohamed F, etal., Mol Cell Biochem. 2009 Jan;320(1-2):173-83. Epub 2008 Sep 27.
2. Voltage-gated calcium channels. Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
3. Reversal of experimental neuropathic pain by T-type calcium channel blockers. Dogrul A, etal., Pain 2003 Sep;105(1-2):159-68.
4. Angiotensin II signaling pathways mediate expression of cardiac T-type calcium channels. Ferron L, etal., Circ Res. 2003 Dec 12;93(12):1241-8. Epub 2003 Nov 13.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Differential expression of T- and L-type voltage-dependent calcium channels in renal resistance vessels. Hansen PB, etal., Circ Res. 2001 Sep 28;89(7):630-8.
8. Temperature dependence of T-type calcium channel gating. Iftinca M, etal., Neuroscience. 2006 Nov 3;142(4):1031-42. Epub 2006 Aug 28.
9. Distinct contributions of different structural regions to the current kinetics of the Cav3.3 T-type Ca2+ channel. Kang HW, etal., Biochim Biophys Acta. 2008 Dec;1778(12):2740-8. Epub 2008 Aug 9.
10. Distribution of neurons expressing alpha 1G subunit mRNA of T-type voltage-dependent calcium channel in adult rat central nervous system. Kase M, etal., Neurosci Lett. 1999 Jun 18;268(2):77-80.
11. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
12. Expression of voltage-gated Ca2+ channel subtypes in cultured astrocytes. Latour I, etal., Glia 2003 Mar;41(4):347-53.
13. Ca(V)3 T-type calcium channel isoforms differentially distribute to somatic and dendritic compartments in rat central neurons. McKay BE, etal., Eur J Neurosci. 2006 Nov;24(9):2581-94.
14. Molecular and functional characterization of a family of rat brain T-type calcium channels. McRory JE, etal., J Biol Chem 2001 Feb 9;276(6):3999-4011.
15. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
16. Non-L-type voltage-dependent calcium channels control vascular tone of the rat basilar artery. Navarro-Gonzalez MF, etal., Clin Exp Pharmacol Physiol. 2009 Jan;36(1):55-66. Epub 2008 Aug 26.
17. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
18. Vitamin D and calcium co-therapy mitigates pre-established cadmium nephropathy by regulating renal calcium homeostatic molecules and improving anti-oxidative and anti-inflammatory activities in rat. Obaid AA, etal., J Trace Elem Med Biol. 2023 May 24;79:127221. doi: 10.1016/j.jtemb.2023.127221.
19. Molecular characterization of a neuronal low-voltage-activated T-type calcium channel. Perez-Reyes E, etal., Nature 1998 Feb 26;391(6670):896-900.
20. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
21. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
22. GOA pipeline RGD automated data pipeline
23. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
24. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
25. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
26. Cav3.1 (alpha1G) controls von Willebrand factor secretion in rat pulmonary microvascular endothelial cells. Zhou C, etal., Am J Physiol Lung Cell Mol Physiol. 2007 Apr;292(4):L833-44. Epub 2006 Dec 15.
27. Cloning of a T-type Ca2+ channel isoform in insulin-secreting cells. Zhuang H, etal., Diabetes 2000 Jan;49(1):59-64.
Additional References at PubMed
PMID:11230107   PMID:16567615   PMID:16690884   PMID:17450521   PMID:17761775   PMID:18294617   PMID:18765948   PMID:18801335   PMID:18930057   PMID:19520861   PMID:19657020   PMID:19666840  
PMID:20505041   PMID:21084288   PMID:21123217   PMID:21148410   PMID:22972512   PMID:23103495   PMID:23250353   PMID:26456284   PMID:26656778   PMID:26715324   PMID:29578032   PMID:31871187  
PMID:32034930   PMID:34586897  


Genomics

Comparative Map Data
Cacna1g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,851,886 - 79,919,926 (-)NCBIGRCr8
mRatBN7.21079,354,998 - 79,422,960 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,355,008 - 79,422,752 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,959,837 - 84,027,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,457,956 - 83,525,607 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,972,823 - 79,040,417 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,129,071 - 82,197,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,129,506 - 82,197,848 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,950,594 - 82,017,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,043,636 - 83,112,886 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,058,005 - 83,127,256 (-)NCBI
Celera1078,143,865 - 78,211,268 (-)NCBICelera
RH 3.4 Map10617.6RGD
Cytogenetic Map10q26NCBI
CACNA1G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,560,715 - 50,627,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,560,715 - 50,627,474 (+)EnsemblGRCh38hg38GRCh38
GRCh371748,638,076 - 48,704,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,993,448 - 46,059,541 (+)NCBINCBI36Build 36hg18NCBI36
Build 341745,993,447 - 46,038,832NCBI
Celera1745,099,811 - 45,165,917 (+)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1744,006,381 - 44,072,836 (+)NCBIHuRef
CHM1_11748,702,306 - 48,768,826 (+)NCBICHM1_1
T2T-CHM13v2.01751,427,851 - 51,494,639 (+)NCBIT2T-CHM13v2.0
Cacna1g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,299,217 - 94,365,226 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,299,217 - 94,365,024 (-)EnsemblGRCm39 Ensembl
GRCm381194,408,391 - 94,474,400 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,408,391 - 94,474,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv371194,269,705 - 94,335,512 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,224,606 - 94,289,815 (-)NCBIMGSCv36mm8
Celera11104,027,102 - 104,094,565 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Cacna1g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,137,214 - 11,194,036 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,136,885 - 11,194,321 (-)NCBIChiLan1.0ChiLan1.0
CACNA1G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,751,924 - 66,818,924 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,559,170 - 71,626,261 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,654,558 - 44,786,037 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,528,819 - 49,595,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,529,402 - 49,595,166 (+)Ensemblpanpan1.1panPan2
CACNA1G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,481,148 - 26,544,511 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,481,652 - 26,544,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,874,088 - 25,937,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,275,576 - 27,338,562 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,275,746 - 27,338,504 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,043,294 - 26,106,242 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,301,905 - 26,364,906 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,432,081 - 26,495,083 (+)NCBIUU_Cfam_GSD_1.0
Cacna1g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,917,385 - 25,981,187 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,093,595 - 11,157,563 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,093,600 - 11,157,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA1G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,844,079 - 26,912,110 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,838,633 - 26,912,344 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,991,543 - 27,052,231 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA1G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,710,640 - 42,776,736 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,708,638 - 42,768,843 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,424,552 - 13,494,447 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna1g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,443,781 - 6,501,050 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,443,322 - 6,501,673 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacna1g
265 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:176
Count of miRNA genes:68
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000055597, ENSRNOT00000067416
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
D10Wox53  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,361,543 - 79,361,708 (+)MAPPERmRatBN7.2
Rnor_6.01082,135,617 - 82,135,781NCBIRnor6.0
Rnor_5.01081,957,140 - 81,957,304UniSTSRnor5.0
RGSC_v3.41083,049,746 - 83,049,910UniSTSRGSC3.4
Celera1078,150,411 - 78,150,575UniSTS
Cytogenetic Map10q26-q31UniSTS
RH130173  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,355,437 - 79,355,617 (+)MAPPERmRatBN7.2
Rnor_6.01082,129,511 - 82,129,690NCBIRnor6.0
Rnor_5.01081,951,034 - 81,951,213UniSTSRnor5.0
RGSC_v3.41083,043,641 - 83,043,820UniSTSRGSC3.4
Celera1078,144,305 - 78,144,484UniSTS
RH 3.4 Map10631.2UniSTS
Cytogenetic Map10q26-q31UniSTS
RH142184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,355,447 - 79,355,620 (+)MAPPERmRatBN7.2
Rnor_6.01082,129,521 - 82,129,693NCBIRnor6.0
Rnor_5.01081,951,044 - 81,951,216UniSTSRnor5.0
RGSC_v3.41083,043,651 - 83,043,823UniSTSRGSC3.4
Celera1078,144,315 - 78,144,487UniSTS
RH 3.4 Map10617.6UniSTS
Cytogenetic Map10q26-q31UniSTS
BE098192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,357,051 - 79,357,225 (+)MAPPERmRatBN7.2
Rnor_6.01082,131,125 - 82,131,298NCBIRnor6.0
Rnor_5.01081,952,648 - 81,952,821UniSTSRnor5.0
RGSC_v3.41083,045,255 - 83,045,428UniSTSRGSC3.4
Celera1078,145,919 - 78,146,092UniSTS
RH 3.4 Map10719.39UniSTS
Cytogenetic Map10q26-q31UniSTS
RH137526  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21079,355,442 - 79,355,563 (+)MAPPERmRatBN7.2
Rnor_6.01082,129,516 - 82,129,636NCBIRnor6.0
Rnor_5.01081,951,039 - 81,951,159UniSTSRnor5.0
RGSC_v3.41083,043,646 - 83,043,766UniSTSRGSC3.4
Celera1078,144,310 - 78,144,430UniSTS
Cytogenetic Map10q26-q31UniSTS
CACNA1G-1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01081,959,678 - 81,960,532NCBIRnor5.0
RGSC_v3.41083,052,735 - 83,053,623UniSTSRGSC3.4
Celera1078,153,302 - 78,154,190UniSTS
Cytogenetic Map10q26-q31UniSTS


Genetic Models
This gene Cacna1g is modified in the following models/strains:


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001308302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF027984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF125161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF203698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF290212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF116282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF116283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF116284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF116285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF116286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU293207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ227500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081307   ⟹   ENSRNOP00000071940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,008 - 79,422,424 (-)Ensembl
Rnor_6.0 Ensembl1082,129,506 - 82,197,848 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092024   ⟹   ENSRNOP00000072061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,008 - 79,422,424 (-)Ensembl
Rnor_6.0 Ensembl1082,129,541 - 82,197,520 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101230   ⟹   ENSRNOP00000095036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,730 - 79,422,752 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106180   ⟹   ENSRNOP00000080340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,008 - 79,422,267 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106257   ⟹   ENSRNOP00000091253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,008 - 79,422,424 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115912   ⟹   ENSRNOP00000082604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1079,355,008 - 79,422,424 (-)Ensembl
RefSeq Acc Id: NM_001308302   ⟹   NP_001295231
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,634 (-)NCBI
mRatBN7.21079,354,998 - 79,422,752 (-)NCBI
Rnor_6.01082,129,071 - 82,197,520 (-)NCBI
Celera1078,143,865 - 78,211,268 (-)NCBI
Sequence:
RefSeq Acc Id: NM_031601   ⟹   NP_113789
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,634 (-)NCBI
mRatBN7.21079,354,998 - 79,422,752 (-)NCBI
Rnor_6.01082,129,071 - 82,197,520 (-)NCBI
Rnor_5.01081,950,594 - 82,017,885 (-)NCBI
RGSC_v3.41083,043,636 - 83,112,886 (-)RGD
Celera1078,143,865 - 78,211,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767985   ⟹   XP_008766207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,926 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767986   ⟹   XP_008766208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,926 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767987   ⟹   XP_008766209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,926 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767988   ⟹   XP_008766210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,926 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767994   ⟹   XP_008766216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767996   ⟹   XP_008766218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767997   ⟹   XP_008766219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767998   ⟹   XP_008766220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767999   ⟹   XP_008766221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768000   ⟹   XP_008766222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768001   ⟹   XP_008766223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,925 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597189   ⟹   XP_017452678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81079,851,886 - 79,919,926 (-)NCBI
mRatBN7.21079,354,998 - 79,422,960 (-)NCBI
Rnor_6.01082,129,071 - 82,197,821 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001295231 (Get FASTA)   NCBI Sequence Viewer  
  NP_113789 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766207 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766208 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766209 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766210 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766216 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766218 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766219 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766220 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766221 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766222 (Get FASTA)   NCBI Sequence Viewer  
  XP_008766223 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452678 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC67372 (Get FASTA)   NCBI Sequence Viewer  
  AAD26858 (Get FASTA)   NCBI Sequence Viewer  
  AAF26716 (Get FASTA)   NCBI Sequence Viewer  
  AAG35186 (Get FASTA)   NCBI Sequence Viewer  
  ABL63737 (Get FASTA)   NCBI Sequence Viewer  
  ABL63738 (Get FASTA)   NCBI Sequence Viewer  
  ABL63739 (Get FASTA)   NCBI Sequence Viewer  
  ABL63740 (Get FASTA)   NCBI Sequence Viewer  
  ABL63741 (Get FASTA)   NCBI Sequence Viewer  
  ABX89945 (Get FASTA)   NCBI Sequence Viewer  
  ABX89946 (Get FASTA)   NCBI Sequence Viewer  
  ABX89947 (Get FASTA)   NCBI Sequence Viewer  
  ABX89948 (Get FASTA)   NCBI Sequence Viewer  
  ABX89949 (Get FASTA)   NCBI Sequence Viewer  
  ABX89950 (Get FASTA)   NCBI Sequence Viewer  
  ACJ71730 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071940.2
  ENSRNOP00000072061.2
  ENSRNOP00000080340.1
  ENSRNOP00000082604.1
  ENSRNOP00000091253.1
  ENSRNOP00000095036.1
GenBank Protein O54898 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113789   ⟸   NM_031601
- Peptide Label: isoform 2
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot),   A6HI48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766222   ⟸   XM_008768000
- Peptide Label: isoform X11
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766223   ⟸   XM_008768001
- Peptide Label: isoform X12
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766221   ⟸   XM_008767999
- Peptide Label: isoform X10
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766210   ⟸   XM_008767988
- Peptide Label: isoform X4
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766219   ⟸   XM_008767997
- Peptide Label: isoform X8
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766220   ⟸   XM_008767998
- Peptide Label: isoform X9
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766208   ⟸   XM_008767986
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZVK1 (UniProtKB/TrEMBL),   A0A8I5ZQG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766218   ⟸   XM_008767996
- Peptide Label: isoform X7
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot),   A0A0G2K1Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766209   ⟸   XM_008767987
- Peptide Label: isoform X3
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008766216   ⟸   XM_008767994
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K209 (UniProtKB/TrEMBL),   A0A8I5ZQG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766207   ⟸   XM_008767985
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001295231   ⟸   NM_001308302
- Peptide Label: isoform 1
- UniProtKB: Q9WUB8 (UniProtKB/TrEMBL),   A0A8I5ZQG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452678   ⟸   XM_017597189
- Peptide Label: isoform X5
- UniProtKB: Q548R1 (UniProtKB/Swiss-Prot),   O54898 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072061   ⟸   ENSRNOT00000092024
Ensembl Acc Id: ENSRNOP00000071940   ⟸   ENSRNOT00000081307
Ensembl Acc Id: ENSRNOP00000091253   ⟸   ENSRNOT00000106257
Ensembl Acc Id: ENSRNOP00000082604   ⟸   ENSRNOT00000115912
Ensembl Acc Id: ENSRNOP00000095036   ⟸   ENSRNOT00000101230
Ensembl Acc Id: ENSRNOP00000080340   ⟸   ENSRNOT00000106180
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54898-F1-model_v2 AlphaFold O54898 1-2254 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697605
Promoter ID:EPDNEW_R8127
Type:initiation region
Name:Cacna1g_1
Description:calcium voltage-gated channel subunit alpha1 G
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01082,197,810 - 82,197,870EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68942 AgrOrtholog
BioCyc Gene G2FUF-23622 BioCyc
Ensembl Genes ENSRNOG00000060528 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081307.2 UniProtKB/TrEMBL
  ENSRNOT00000092024.2 UniProtKB/TrEMBL
  ENSRNOT00000101230.1 UniProtKB/TrEMBL
  ENSRNOT00000106180.1 UniProtKB/TrEMBL
  ENSRNOT00000106257.1 UniProtKB/TrEMBL
  ENSRNOT00000115912.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_T_a1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCAlpha1 UniProtKB/TrEMBL
  VGCC_Ca_Na UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29717 UniProtKB/TrEMBL
NCBI Gene 29717 ENTREZGENE
PANTHER PTHR10037 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10037:SF137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CACNA1G RGD
PhenoGen Cacna1g PhenoGen
PRINTS CACHANNEL UniProtKB/TrEMBL
  TVDCCALPHA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000060528 RatGTEx
Superfamily-SCOP Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC218456
UniProt A0A0G2K1Q5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K209 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIV4_RAT UniProtKB/TrEMBL
  A0A8I6GKZ6_RAT UniProtKB/TrEMBL
  A1EA75_RAT UniProtKB/TrEMBL
  A6HI48 ENTREZGENE, UniProtKB/TrEMBL
  A6HI50_RAT UniProtKB/TrEMBL
  A9YTJ4_RAT UniProtKB/TrEMBL
  A9YTJ5_RAT UniProtKB/TrEMBL
  A9YTJ6_RAT UniProtKB/TrEMBL
  A9YTJ7_RAT UniProtKB/TrEMBL
  A9YTJ8_RAT UniProtKB/TrEMBL
  A9YTJ9_RAT UniProtKB/TrEMBL
  B8XCX0_RAT UniProtKB/TrEMBL
  CAC1G_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q548R1 ENTREZGENE
  Q9JL92_RAT UniProtKB/TrEMBL
  Q9WUB8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q548R1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Cacna1g  calcium voltage-gated channel subunit alpha1 G  Cacna1g  calcium channel, voltage-dependent, T type, alpha 1G subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Cacna1g  calcium channel, voltage-dependent, T type, alpha 1G subunit      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localizes to the plasma membrane of astrocytes 727502
gene_expression expressed throughout the newborn and juvenile brain 62421
gene_expression expressed in cultured astrocytes 727502
gene_expression expressed in amygdala, cerebellum and thalamus 68747
gene_process mediates voltage-dependent entry of calcium into nerve, muscle, and endocrine cells 68748
gene_process responsible for central neuron rebound burst firing and implicated in slow wave sleep and epilepsy 68748
gene_process may play a role in hormone secretion and smooth muscle excitability 68748
gene_process may be involved in pacemaker activity, neuronal oscillations and resonance 68747